Wall clock time and date at job start Sat Apr 11 2020 05:44:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.36000 * 116.99714 * 2 1 4 4 C 1.38666 * 120.05022 * 0.25155 * 3 2 1 5 5 C 1.38220 * 120.08966 * 180.25442 * 4 3 2 6 6 C 1.38233 * 120.18254 * 359.74359 * 5 4 3 7 7 C 1.38673 * 120.08450 * 0.02562 * 6 5 4 8 8 O 1.35998 * 120.04101 * 180.02562 * 7 6 5 9 9 C 1.42894 * 117.00394 * 359.97438 * 8 7 6 10 10 C 1.38976 * 120.03930 * 179.97438 * 3 2 1 11 11 O 1.36103 * 120.09115 * 0.02562 * 10 3 2 12 12 C 1.42895 * 116.99918 * 269.72403 * 11 10 3 13 13 C 1.53006 * 109.46845 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.46824 * 55.00418 * 13 12 11 15 15 O 1.42899 * 109.47421 * 295.00362 * 13 12 11 16 16 C 1.53000 * 109.46846 * 175.00002 * 13 12 11 17 17 N 1.46901 * 109.46769 * 185.00040 * 16 13 12 18 18 C 1.46901 * 110.99975 * 66.05138 * 17 16 13 19 19 C 1.46903 * 110.99790 * 190.00085 * 17 16 13 20 20 H 1.08998 * 109.47089 * 300.00145 * 19 17 16 21 21 C 1.53003 * 109.47236 * 60.00351 * 19 17 16 22 22 C 1.50700 * 109.46790 * 180.02562 * 19 17 16 23 23 H 1.07994 * 120.00692 * 359.97438 * 22 19 17 24 24 C 1.37884 * 119.99565 * 180.02562 * 22 19 17 25 25 N 1.31515 * 119.99672 * 180.02562 * 24 22 19 26 26 Si 1.86794 * 120.00353 * 359.97438 * 24 22 19 27 27 H 1.48500 * 109.47108 * 89.99960 * 26 24 22 28 28 H 1.48498 * 109.47372 * 210.00044 * 26 24 22 29 29 H 1.48502 * 109.47048 * 330.00329 * 26 24 22 30 30 H 1.09003 * 109.47439 * 180.02562 * 1 2 3 31 31 H 1.08999 * 109.46990 * 300.00482 * 1 2 3 32 32 H 1.09010 * 109.46726 * 60.00321 * 1 2 3 33 33 H 1.08001 * 119.95358 * 0.02562 * 4 3 2 34 34 H 1.08004 * 119.91058 * 179.76942 * 5 4 3 35 35 H 1.07997 * 119.95951 * 179.97438 * 6 5 4 36 36 H 1.08998 * 109.47254 * 180.02562 * 9 8 7 37 37 H 1.09001 * 109.46828 * 300.00452 * 9 8 7 38 38 H 1.09004 * 109.47185 * 59.99588 * 9 8 7 39 39 H 1.09004 * 109.47205 * 60.00356 * 12 11 10 40 40 H 1.08998 * 109.47325 * 299.99833 * 12 11 10 41 41 H 0.96702 * 113.99557 * 300.00370 * 15 13 12 42 42 H 1.09002 * 109.47398 * 305.00335 * 16 13 12 43 43 H 1.09001 * 109.47194 * 65.00515 * 16 13 12 44 44 H 1.09001 * 109.47121 * 59.99638 * 18 17 16 45 45 H 1.09005 * 109.47342 * 179.97438 * 18 17 16 46 46 H 1.08999 * 109.46894 * 299.99652 * 18 17 16 47 47 H 1.09000 * 109.46758 * 59.99318 * 21 19 17 48 48 H 1.08995 * 109.47011 * 180.02562 * 21 19 17 49 49 H 1.09001 * 109.46845 * 299.99722 * 21 19 17 50 50 H 0.97002 * 119.99458 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2118 0.0000 4 6 1.2921 2.3754 0.0053 5 6 1.9187 3.6074 0.0000 6 6 3.2988 3.6852 -0.0053 7 6 4.0604 2.5263 -0.0057 8 8 5.4181 2.6038 -0.0104 9 6 5.9933 3.9119 -0.0151 10 6 3.4342 1.2856 0.0005 11 8 4.1781 0.1458 0.0005 12 6 4.5374 -0.3944 1.2737 13 6 5.3652 -1.6654 1.0732 14 1 6.2225 -1.4441 0.4374 15 8 4.5573 -2.6670 0.4518 16 6 5.8547 -2.1745 2.4304 17 7 6.7470 -3.3240 2.2293 18 6 7.9807 -2.9189 1.5424 19 6 7.0483 -3.9862 3.5056 20 1 7.5358 -3.2784 4.1759 21 6 5.7481 -4.4802 4.1432 22 6 7.9644 -5.1573 3.2598 23 1 8.2899 -5.3870 2.2561 24 6 8.3861 -5.9362 4.3165 25 7 9.1860 -6.9579 4.1022 26 14 7.8226 -5.5395 6.0527 27 1 6.5612 -6.2677 6.3422 28 1 8.8686 -5.9572 7.0203 29 1 7.5897 -4.0780 6.1757 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5139 0.8899 32 1 -0.3633 0.5138 -0.8901 33 1 0.2136 2.3189 0.0098 34 1 1.3284 4.5118 0.0003 35 1 3.7846 4.6497 -0.0098 36 1 7.0803 3.8309 -0.0190 37 1 5.6662 4.4493 -0.9052 38 1 5.6720 4.4533 0.8747 39 1 3.6340 -0.6343 1.8346 40 1 5.1246 0.3386 1.8269 41 1 3.7746 -2.9139 0.9632 42 1 6.3963 -1.3795 2.9430 43 1 4.9998 -2.4795 3.0340 44 1 8.5020 -2.1725 2.1417 45 1 8.6235 -3.7888 1.4066 46 1 7.7324 -2.4949 0.5695 47 1 5.2606 -5.1879 3.4727 48 1 5.9716 -4.9711 5.0903 49 1 5.0859 -3.6329 4.3210 50 1 9.4824 -7.5060 4.8455 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000345875015.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:26 Heat of formation + Delta-G solvation = -134.702365 kcal Electronic energy + Delta-G solvation = -30453.078090 eV Core-core repulsion = 26253.867515 eV Total energy + Delta-G solvation = -4199.210575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.75660 -39.98488 -39.91112 -38.69887 -37.40966 -37.00499 -34.69711 -32.49214 -31.63841 -30.59879 -30.54453 -28.68610 -28.24062 -27.47390 -26.35922 -25.30095 -23.38253 -22.87239 -22.54548 -21.25652 -19.82431 -18.92970 -18.40234 -18.15267 -17.67558 -17.46355 -17.36597 -16.81712 -16.75606 -16.43158 -16.01661 -15.80994 -15.78991 -15.72868 -15.13333 -14.97696 -14.81609 -14.49928 -14.21487 -13.97451 -13.80581 -13.59702 -13.41428 -13.27353 -12.99530 -12.73625 -12.62463 -12.49604 -12.44514 -12.39854 -12.39312 -12.03885 -11.98834 -11.66908 -11.58400 -11.44238 -11.10490 -10.93908 -10.78776 -10.72457 -9.29412 -9.18512 -8.97618 -8.27408 -6.30908 0.13942 0.33018 1.30007 1.34843 1.45248 1.90542 2.31071 2.32038 2.72899 2.75550 3.05697 3.24891 3.59031 3.84909 3.90873 3.98796 4.03221 4.08770 4.09889 4.24039 4.29922 4.34588 4.38593 4.39589 4.40879 4.41634 4.46698 4.52159 4.54887 4.64600 4.65273 4.72768 4.76277 4.79255 4.84593 4.95665 5.09533 5.15958 5.16701 5.22535 5.37884 5.43650 5.45255 5.64811 6.01044 6.09131 6.32494 6.33703 6.67647 6.72935 6.76123 6.95140 7.33492 8.89175 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.016426 B = 0.002540 C = 0.002361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1704.204713 B =11022.459750 C =11855.455662 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.327 6.327 3 C 0.135 3.865 4 C -0.235 4.235 5 C -0.038 4.038 6 C -0.236 4.236 7 C 0.132 3.868 8 O -0.331 6.331 9 C 0.017 3.983 10 C -0.013 4.013 11 O -0.324 6.324 12 C 0.048 3.952 13 C 0.129 3.871 14 H 0.088 0.912 15 O -0.556 6.556 16 C 0.025 3.975 17 N -0.530 5.530 18 C 0.039 3.961 19 C 0.184 3.816 20 H -0.009 1.009 21 C -0.142 4.142 22 C -0.508 4.508 23 H 0.040 0.960 24 C 0.010 3.990 25 N -0.949 5.949 26 Si 0.952 3.048 27 H -0.263 1.263 28 H -0.299 1.299 29 H -0.251 1.251 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.069 0.931 33 H 0.161 0.839 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.112 0.888 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.380 0.620 42 H 0.042 0.958 43 H 0.093 0.907 44 H 0.018 0.982 45 H 0.052 0.948 46 H 0.068 0.932 47 H 0.055 0.945 48 H 0.035 0.965 49 H 0.066 0.934 50 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.139 28.537 -5.830 35.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.241 6.241 3 C 0.088 3.912 4 C -0.254 4.254 5 C -0.056 4.056 6 C -0.254 4.254 7 C 0.086 3.914 8 O -0.245 6.245 9 C -0.077 4.077 10 C -0.058 4.058 11 O -0.241 6.241 12 C -0.027 4.027 13 C 0.069 3.931 14 H 0.106 0.894 15 O -0.362 6.362 16 C -0.103 4.103 17 N -0.254 5.254 18 C -0.109 4.109 19 C 0.076 3.924 20 H 0.008 0.992 21 C -0.199 4.199 22 C -0.547 4.547 23 H 0.059 0.941 24 C -0.186 4.186 25 N -0.590 5.590 26 Si 0.779 3.221 27 H -0.189 1.189 28 H -0.227 1.227 29 H -0.175 1.175 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.088 0.912 33 H 0.178 0.822 34 H 0.186 0.814 35 H 0.177 0.823 36 H 0.130 0.870 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.080 0.920 40 H 0.078 0.922 41 H 0.228 0.772 42 H 0.060 0.940 43 H 0.111 0.889 44 H 0.037 0.963 45 H 0.071 0.929 46 H 0.087 0.913 47 H 0.075 0.925 48 H 0.054 0.946 49 H 0.085 0.915 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -19.531 27.642 -6.667 34.496 hybrid contribution 0.246 0.359 1.739 1.792 sum -19.285 28.001 -4.928 34.355 Atomic orbital electron populations 1.23414 0.76062 1.05583 1.02657 1.86178 1.23660 1.26274 1.87942 1.19283 0.90482 0.86162 0.95230 1.21438 1.01468 0.91061 1.11431 1.21212 0.93507 0.98201 0.92634 1.21431 0.95294 0.97210 1.11489 1.19312 0.83483 0.93164 0.95476 1.86155 1.16921 1.33350 1.88062 1.23408 0.99988 0.81551 1.02754 1.17565 0.87587 0.85088 1.15597 1.86198 1.70438 1.38515 1.28919 1.23360 0.98803 0.95525 0.85057 1.21701 0.92835 0.84941 0.93653 0.89376 1.86605 1.40702 1.58898 1.49962 1.22796 0.98347 0.92502 0.96663 1.61747 1.15342 1.25521 1.22818 1.22219 0.91660 0.99184 0.97859 1.19549 0.93230 0.92737 0.86866 0.99193 1.22117 0.97941 1.00859 0.98987 1.21246 1.27371 1.11635 0.94419 0.94150 1.25808 0.94932 0.94505 1.03403 1.70045 1.36360 1.19301 1.33274 0.85817 0.77335 0.79912 0.79083 1.18884 1.22655 1.17490 0.86881 0.90986 0.91207 0.82197 0.81395 0.82265 0.87015 0.91037 0.90979 0.91983 0.92211 0.77152 0.94015 0.88921 0.96315 0.92937 0.91312 0.92547 0.94609 0.91487 0.92532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.81 113.37 1.11 1.31 16 2 O -0.33 -7.48 10.28 -79.61 -0.82 -8.30 16 3 C 0.14 3.08 6.70 22.55 0.15 3.23 16 4 C -0.24 -3.52 9.04 22.37 0.20 -3.32 16 5 C -0.04 -0.45 10.04 22.26 0.22 -0.23 16 6 C -0.24 -3.57 9.04 22.37 0.20 -3.37 16 7 C 0.13 3.05 6.70 22.55 0.15 3.20 16 8 O -0.33 -7.79 10.28 -79.59 -0.82 -8.61 16 9 C 0.02 0.21 9.81 113.37 1.11 1.32 16 10 C -0.01 -0.37 5.75 22.62 0.13 -0.24 16 11 O -0.32 -10.51 9.59 -67.77 -0.65 -11.16 16 12 C 0.05 1.36 5.70 71.98 0.41 1.77 16 13 C 0.13 4.12 3.20 30.60 0.10 4.21 16 14 H 0.09 3.10 6.34 -2.39 -0.02 3.08 16 15 O -0.56 -19.26 13.25 -144.34 -1.91 -21.17 16 16 C 0.03 0.84 4.41 86.30 0.38 1.22 16 17 N -0.53 -22.70 4.57 -901.44 -4.12 -26.82 16 18 C 0.04 1.64 9.05 127.69 1.16 2.79 16 19 C 0.18 8.82 1.65 44.17 0.07 8.89 16 20 H -0.01 -0.46 7.20 -2.39 -0.02 -0.47 16 21 C -0.14 -5.98 8.47 71.98 0.61 -5.37 16 22 C -0.51 -29.77 8.46 25.60 0.22 -29.56 16 23 H 0.04 2.66 6.65 -2.91 -0.02 2.64 16 24 C 0.01 0.62 5.45 84.66 0.46 1.08 16 25 N -0.95 -60.46 13.96 21.45 0.30 -60.16 16 26 Si 0.95 45.38 24.37 68.60 1.67 47.05 16 27 H -0.26 -11.83 6.87 99.48 0.68 -11.15 16 28 H -0.30 -14.20 7.11 99.48 0.71 -13.49 16 29 H -0.25 -11.09 6.53 99.48 0.65 -10.44 16 30 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 0.59 7.65 -2.39 -0.02 0.58 16 32 H 0.07 0.62 7.67 -2.38 -0.02 0.60 16 33 H 0.16 1.40 6.29 -2.91 -0.02 1.39 16 34 H 0.17 0.72 8.06 -2.91 -0.02 0.70 16 35 H 0.16 1.44 6.29 -2.91 -0.02 1.42 16 36 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 37 H 0.07 0.65 7.66 -2.39 -0.02 0.63 16 38 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 39 H 0.06 1.60 8.14 -2.38 -0.02 1.58 16 40 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 41 H 0.38 10.47 9.05 -74.06 -0.67 9.80 16 42 H 0.04 1.32 8.12 -2.39 -0.02 1.30 16 43 H 0.09 2.80 5.83 -2.39 -0.01 2.78 16 44 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 45 H 0.05 2.53 6.10 -2.38 -0.01 2.51 16 46 H 0.07 2.59 6.37 -2.39 -0.02 2.58 16 47 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.04 1.54 3.27 -2.39 -0.01 1.53 16 49 H 0.07 2.28 6.20 -2.39 -0.01 2.26 16 50 H 0.27 15.82 8.31 -92.71 -0.77 15.05 16 Total: -1.00 -80.36 393.64 0.55 -79.81 By element: Atomic # 1 Polarization: 22.18 SS G_CDS: 0.21 Total: 22.39 kcal Atomic # 6 Polarization: -19.72 SS G_CDS: 6.69 Total: -13.03 kcal Atomic # 7 Polarization: -83.16 SS G_CDS: -3.82 Total: -86.99 kcal Atomic # 8 Polarization: -45.04 SS G_CDS: -4.20 Total: -49.24 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 1.67 Total: 47.05 kcal Total: -80.36 0.55 -79.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000345875015.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.895 kcal (2) G-P(sol) polarization free energy of solvation -80.360 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.808 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.702 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds