Wall clock time and date at job start Sat Apr 11 2020 05:44:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81396 * 109.47536 * 2 1 4 4 C 1.81402 * 103.00217 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.05259 * 306.41570 * 4 3 2 6 6 C 1.54267 * 110.03123 * 67.83435 * 4 3 2 7 7 C 1.54886 * 104.19238 * 142.89667 * 6 4 3 8 8 C 1.54892 * 102.74989 * 322.05425 * 7 6 4 9 9 C 1.53879 * 110.03030 * 185.00206 * 4 3 2 10 10 H 1.09001 * 110.07099 * 121.41092 * 9 4 3 11 11 N 1.46894 * 110.03440 * 359.97438 * 9 4 3 12 12 C 1.46900 * 110.99879 * 167.25825 * 11 9 4 13 13 C 1.50704 * 109.47132 * 180.02562 * 12 11 9 14 14 O 1.21276 * 119.99924 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00016 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00204 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47533 * 270.00534 * 16 15 13 18 18 H 1.07993 * 120.00057 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99986 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00239 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46828 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47399 * 240.00435 * 21 19 17 24 24 H 1.48503 * 109.47271 * 119.99833 * 21 19 17 25 25 C 1.46498 * 119.99953 * 0.02562 * 15 13 12 26 26 C 1.53006 * 109.46819 * 269.99354 * 25 15 13 27 27 C 1.47195 * 109.47136 * 179.97438 * 26 25 15 28 28 N 9.17270 * 155.12404 * 244.19140 * 3 1 2 29 29 H 1.09003 * 109.46939 * 299.99783 * 1 2 3 30 30 H 1.08997 * 109.47117 * 59.99136 * 1 2 3 31 31 H 1.08992 * 109.47801 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47258 * 239.99817 * 2 1 3 33 33 H 1.09006 * 109.47043 * 120.00040 * 2 1 3 34 34 H 1.08999 * 110.48326 * 24.21477 * 6 4 3 35 35 H 1.08995 * 110.59519 * 261.62688 * 6 4 3 36 36 H 1.09007 * 110.75473 * 203.74466 * 7 6 4 37 37 H 1.08996 * 110.91746 * 80.45098 * 7 6 4 38 38 H 1.08995 * 110.48434 * 279.26653 * 8 7 6 39 39 H 1.09003 * 110.48318 * 156.62356 * 8 7 6 40 40 H 1.00906 * 110.99908 * 43.30348 * 11 9 4 41 41 H 1.08990 * 109.47230 * 59.99755 * 12 11 9 42 42 H 1.09003 * 109.47130 * 299.99663 * 12 11 9 43 43 H 1.09003 * 109.47199 * 149.99615 * 16 15 13 44 44 H 1.09009 * 109.46644 * 30.00640 * 16 15 13 45 45 H 0.96997 * 119.99929 * 359.97438 * 20 19 17 46 46 H 1.09000 * 109.47854 * 29.99347 * 25 15 13 47 47 H 1.08998 * 109.47402 * 149.99926 * 25 15 13 48 48 H 1.08990 * 109.47385 * 300.00383 * 26 25 15 49 49 H 1.09002 * 109.47096 * 60.00325 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 1 4.2404 0.8594 0.8230 6 6 4.4000 0.9030 -1.3433 7 6 5.7440 1.6151 -1.6360 8 6 5.4792 3.0601 -1.1452 9 6 4.6233 2.8773 0.1252 10 1 5.2594 2.8974 1.0101 11 7 3.6125 3.9399 0.2076 12 6 4.2178 5.2108 0.6276 13 6 3.1527 6.2744 0.7013 14 8 2.0027 6.0008 0.4301 15 7 3.4781 7.5296 1.0686 16 6 2.4428 8.5637 1.1397 17 6 2.3291 9.2534 -0.1954 18 1 2.9647 8.9520 -1.0147 19 6 1.4136 10.2693 -0.3707 20 7 0.6399 10.6368 0.6274 21 14 1.2731 11.1248 -2.0253 22 1 2.2481 10.5300 -2.9744 23 1 1.5618 12.5721 -1.8604 24 1 -0.1028 10.9519 -2.5567 25 6 4.8673 7.8603 1.3956 26 6 5.1069 7.6348 2.8899 27 6 6.5029 7.9664 3.2185 28 7 7.5790 8.2242 3.4737 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6751 1.1184 -2.1283 35 1 4.5507 -0.1724 -1.2492 36 1 5.9625 1.6039 -2.7039 37 1 6.5572 1.1584 -1.0721 38 1 4.9286 3.6239 -1.8982 39 1 6.4178 3.5591 -0.9042 40 1 2.8599 3.6760 0.8258 41 1 4.9784 5.5072 -0.0945 42 1 4.6765 5.0880 1.6088 43 1 2.7100 9.2934 1.9041 44 1 1.4875 8.1045 1.3940 45 1 0.7131 10.1928 1.4867 46 1 5.5379 7.2224 0.8199 47 1 5.0597 8.9047 1.1504 48 1 4.4364 8.2726 3.4657 49 1 4.9146 6.5903 3.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348470613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:35 Heat of formation + Delta-G solvation = -17.837747 kcal Electronic energy + Delta-G solvation = -27427.225473 eV Core-core repulsion = 23708.128150 eV Total energy + Delta-G solvation = -3719.097323 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.54913 -38.49515 -36.92171 -35.35590 -34.28720 -33.10630 -32.85307 -30.83694 -29.30120 -28.70924 -26.83051 -24.96403 -23.99077 -23.61214 -22.49866 -21.12648 -20.17797 -18.74505 -17.71128 -17.07272 -16.76435 -16.51664 -16.10885 -15.84083 -15.29198 -15.05596 -14.92648 -14.68424 -14.46635 -14.15745 -13.83103 -13.76587 -13.67058 -13.01842 -12.87406 -12.77058 -12.51739 -12.50574 -12.45114 -11.86014 -11.81540 -11.74128 -11.64212 -11.45302 -11.37545 -11.29741 -11.24296 -11.07292 -10.93910 -10.87993 -10.81294 -10.57078 -10.11848 -9.71785 -9.18961 -9.05026 -8.43336 -8.37866 -7.75777 -7.60233 -6.38468 -4.10712 1.52002 2.50247 2.66226 2.74173 3.28009 3.45387 3.49503 3.50593 3.63597 4.00499 4.21570 4.24433 4.36958 4.54545 4.73206 4.78496 4.83159 4.89220 5.01363 5.05271 5.06945 5.11110 5.17137 5.21281 5.22363 5.33508 5.36788 5.43068 5.43565 5.51313 5.55669 5.62584 5.63101 5.74588 5.74811 5.79772 5.92927 5.93977 6.00391 6.18540 6.66659 6.93024 7.09846 7.31083 7.40126 7.50248 8.01934 8.17586 8.43832 8.78218 8.95821 9.58503 10.99343 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008660 B = 0.003285 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.474499 B = 8520.536000 C =10268.342517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.112 4.112 3 S -0.194 6.194 4 C -0.070 4.070 5 H 0.085 0.915 6 C -0.115 4.115 7 C -0.120 4.120 8 C -0.117 4.117 9 C 0.105 3.895 10 H 0.050 0.950 11 N -0.658 5.658 12 C 0.040 3.960 13 C 0.506 3.494 14 O -0.513 6.513 15 N -0.596 5.596 16 C 0.236 3.764 17 C -0.606 4.606 18 H 0.053 0.947 19 C 0.021 3.979 20 N -0.911 5.911 21 Si 1.075 2.925 22 H -0.290 1.290 23 H -0.287 1.287 24 H -0.286 1.286 25 C 0.119 3.881 26 C -0.050 4.050 27 C 0.216 3.784 28 N -0.443 5.443 29 H 0.064 0.936 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.084 0.916 35 H 0.063 0.937 36 H 0.071 0.929 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.065 0.935 40 H 0.358 0.642 41 H 0.097 0.903 42 H 0.051 0.949 43 H 0.023 0.977 44 H 0.036 0.964 45 H 0.268 0.732 46 H 0.075 0.925 47 H 0.094 0.906 48 H 0.116 0.884 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.937 -21.373 0.789 23.180 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.261 4.261 3 S 0.033 5.967 4 C -0.200 4.200 5 H 0.104 0.896 6 C -0.155 4.155 7 C -0.159 4.159 8 C -0.156 4.156 9 C -0.006 4.006 10 H 0.068 0.932 11 N -0.297 5.297 12 C -0.093 4.093 13 C 0.292 3.708 14 O -0.387 6.387 15 N -0.329 5.329 16 C 0.117 3.883 17 C -0.645 4.645 18 H 0.072 0.928 19 C -0.183 4.183 20 N -0.547 5.547 21 Si 0.904 3.096 22 H -0.216 1.216 23 H -0.214 1.214 24 H -0.212 1.212 25 C -0.008 4.008 26 C -0.092 4.092 27 C -0.102 4.102 28 N -0.121 5.121 29 H 0.083 0.917 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.082 0.918 36 H 0.090 0.910 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.084 0.916 40 H 0.183 0.817 41 H 0.115 0.885 42 H 0.069 0.931 43 H 0.041 0.959 44 H 0.054 0.946 45 H 0.078 0.922 46 H 0.094 0.906 47 H 0.112 0.888 48 H 0.134 0.866 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 8.457 -18.855 -0.413 20.669 hybrid contribution 1.445 -2.586 1.784 3.458 sum 9.902 -21.441 1.371 23.657 Atomic orbital electron populations 1.21470 0.92351 1.02093 1.03482 1.23446 1.00404 0.98106 1.04152 1.87676 1.02811 1.08649 1.97542 1.23998 0.95167 0.99682 1.01116 0.89644 1.22736 0.98060 0.98947 0.95736 1.22429 0.96588 0.95590 1.01302 1.22497 0.98838 0.96970 0.97260 1.21950 0.92295 0.88299 0.98102 0.93205 1.60298 1.10516 1.00773 1.58077 1.21960 0.96876 0.90552 0.99889 1.20228 0.89628 0.82957 0.78003 1.90716 1.20665 1.80488 1.46822 1.48001 1.08178 1.10081 1.66594 1.19376 0.86416 0.84818 0.97716 1.22294 1.23944 1.20719 0.97516 0.92847 1.25766 0.92517 0.95597 1.04455 1.70757 1.38253 1.42463 1.03201 0.83454 0.76257 0.75684 0.74252 1.21559 1.21396 1.21230 1.21280 0.84586 1.03725 0.91167 1.19899 0.84529 1.04428 1.00329 1.29060 0.94858 0.93043 0.93209 1.81193 1.12711 1.09254 1.08897 0.91695 0.91502 0.91606 0.90505 0.90913 0.89778 0.91782 0.91036 0.91656 0.89529 0.91649 0.81654 0.88480 0.93142 0.95936 0.94610 0.92186 0.90620 0.88797 0.86634 0.87741 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.15 9.92 37.15 0.37 -0.78 16 2 C -0.11 -0.99 6.55 37.15 0.24 -0.75 16 3 S -0.19 -2.31 18.21 -107.50 -1.96 -4.27 16 4 C -0.07 -0.67 3.41 -25.61 -0.09 -0.76 16 5 H 0.09 0.72 8.14 -51.93 -0.42 0.29 16 6 C -0.12 -0.97 6.26 -25.07 -0.16 -1.12 16 7 C -0.12 -0.93 6.91 -24.74 -0.17 -1.10 16 8 C -0.12 -1.12 5.87 -25.07 -0.15 -1.27 16 9 C 0.10 1.09 3.21 -66.60 -0.21 0.87 16 10 H 0.05 0.46 8.02 -51.93 -0.42 0.05 16 11 N -0.66 -9.08 5.07 -106.81 -0.54 -9.62 16 12 C 0.04 0.53 4.54 -4.97 -0.02 0.51 16 13 C 0.51 9.52 7.71 -10.99 -0.08 9.44 16 14 O -0.51 -12.23 15.78 5.56 0.09 -12.14 16 15 N -0.60 -11.02 2.46 -175.06 -0.43 -11.45 16 16 C 0.24 5.62 4.47 -5.20 -0.02 5.59 16 17 C -0.61 -16.58 9.39 -34.44 -0.32 -16.90 16 18 H 0.05 1.49 7.81 -52.49 -0.41 1.08 16 19 C 0.02 0.59 5.46 -17.82 -0.10 0.49 16 20 N -0.91 -26.98 13.65 55.43 0.76 -26.23 16 21 Si 1.08 25.38 29.90 -169.99 -5.08 20.30 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 H -0.29 -6.57 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 25 C 0.12 1.60 5.17 -4.04 -0.02 1.58 16 26 C -0.05 -0.52 6.03 -29.52 -0.18 -0.70 16 27 C 0.22 2.59 15.43 -20.78 -0.32 2.26 16 28 N -0.44 -6.44 18.53 42.14 0.78 -5.66 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 31 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.08 0.61 8.14 -51.92 -0.42 0.19 16 33 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 34 H 0.08 0.82 7.81 -51.93 -0.41 0.41 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 1.01 8.05 -51.93 -0.42 0.60 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.36 5.39 6.19 -28.35 -0.18 5.21 16 41 H 0.10 1.20 6.93 -51.93 -0.36 0.84 16 42 H 0.05 0.54 7.15 -51.93 -0.37 0.16 16 43 H 0.02 0.52 7.94 -51.93 -0.41 0.11 16 44 H 0.04 0.96 7.29 -51.92 -0.38 0.59 16 45 H 0.27 7.80 7.22 -40.82 -0.29 7.51 16 46 H 0.08 0.85 6.44 -51.93 -0.33 0.51 16 47 H 0.09 1.37 8.07 -51.93 -0.42 0.95 16 48 H 0.12 1.19 8.14 -51.93 -0.42 0.77 16 49 H 0.10 0.88 7.22 -51.93 -0.37 0.51 16 LS Contribution 410.95 15.07 6.19 6.19 Total: -1.00 -33.97 410.95 -9.65 -43.61 By element: Atomic # 1 Polarization: 10.12 SS G_CDS: -8.22 Total: 1.90 kcal Atomic # 6 Polarization: -1.41 SS G_CDS: -1.24 Total: -2.64 kcal Atomic # 7 Polarization: -53.52 SS G_CDS: 0.57 Total: -52.95 kcal Atomic # 8 Polarization: -12.23 SS G_CDS: 0.09 Total: -12.14 kcal Atomic # 14 Polarization: 25.38 SS G_CDS: -5.08 Total: 20.30 kcal Atomic # 16 Polarization: -2.31 SS G_CDS: -1.96 Total: -4.27 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -33.97 -9.65 -43.61 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348470613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.775 kcal (2) G-P(sol) polarization free energy of solvation -33.967 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds