Wall clock time and date at job start Sat Apr 11 2020 05:44:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 S 1.81396 * 109.47536 * 2 1 4 4 C 1.81402 * 103.00217 * 180.02562 * 3 2 1 5 5 H 1.09006 * 110.05259 * 306.41570 * 4 3 2 6 6 C 1.54267 * 110.03123 * 67.83435 * 4 3 2 7 7 C 1.54886 * 104.19238 * 142.89667 * 6 4 3 8 8 C 1.54892 * 102.74989 * 322.05425 * 7 6 4 9 9 C 1.53879 * 110.03030 * 185.00206 * 4 3 2 10 10 H 1.09001 * 110.07099 * 121.41092 * 9 4 3 11 11 N 1.46894 * 110.03440 * 359.97438 * 9 4 3 12 12 C 1.46900 * 110.99879 * 167.25825 * 11 9 4 13 13 C 1.50704 * 109.47132 * 180.02562 * 12 11 9 14 14 O 1.21276 * 119.99924 * 359.97438 * 13 12 11 15 15 N 1.34773 * 120.00016 * 179.97438 * 13 12 11 16 16 C 1.46498 * 120.00204 * 179.97438 * 15 13 12 17 17 C 1.50698 * 109.47533 * 270.00534 * 16 15 13 18 18 H 1.07993 * 120.00057 * 359.97438 * 17 16 15 19 19 C 1.37875 * 119.99986 * 179.97438 * 17 16 15 20 20 N 1.31521 * 119.99892 * 0.02562 * 19 17 16 21 21 Si 1.86796 * 120.00239 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46828 * 0.02562 * 21 19 17 23 23 H 1.48499 * 109.47399 * 240.00435 * 21 19 17 24 24 H 1.48503 * 109.47271 * 119.99833 * 21 19 17 25 25 C 1.46498 * 119.99953 * 0.02562 * 15 13 12 26 26 C 1.53006 * 109.46819 * 269.99354 * 25 15 13 27 27 C 1.47195 * 109.47136 * 179.97438 * 26 25 15 28 28 N 9.17270 * 155.12404 * 244.19140 * 3 1 2 29 29 H 1.09003 * 109.46939 * 299.99783 * 1 2 3 30 30 H 1.08997 * 109.47117 * 59.99136 * 1 2 3 31 31 H 1.08992 * 109.47801 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.47258 * 239.99817 * 2 1 3 33 33 H 1.09006 * 109.47043 * 120.00040 * 2 1 3 34 34 H 1.08999 * 110.48326 * 24.21477 * 6 4 3 35 35 H 1.08995 * 110.59519 * 261.62688 * 6 4 3 36 36 H 1.09007 * 110.75473 * 203.74466 * 7 6 4 37 37 H 1.08996 * 110.91746 * 80.45098 * 7 6 4 38 38 H 1.08995 * 110.48434 * 279.26653 * 8 7 6 39 39 H 1.09003 * 110.48318 * 156.62356 * 8 7 6 40 40 H 1.00906 * 110.99908 * 43.30348 * 11 9 4 41 41 H 1.08990 * 109.47230 * 59.99755 * 12 11 9 42 42 H 1.09003 * 109.47130 * 299.99663 * 12 11 9 43 43 H 1.09003 * 109.47199 * 149.99615 * 16 15 13 44 44 H 1.09009 * 109.46644 * 30.00640 * 16 15 13 45 45 H 0.96997 * 119.99929 * 359.97438 * 20 19 17 46 46 H 1.09000 * 109.47854 * 29.99347 * 25 15 13 47 47 H 1.08998 * 109.47402 * 149.99926 * 25 15 13 48 48 H 1.08990 * 109.47385 * 300.00383 * 26 25 15 49 49 H 1.09002 * 109.47096 * 60.00325 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 6 3.9372 1.5057 -0.0008 5 1 4.2404 0.8594 0.8230 6 6 4.4000 0.9030 -1.3433 7 6 5.7440 1.6151 -1.6360 8 6 5.4792 3.0601 -1.1452 9 6 4.6233 2.8773 0.1252 10 1 5.2594 2.8974 1.0101 11 7 3.6125 3.9399 0.2076 12 6 4.2178 5.2108 0.6276 13 6 3.1527 6.2744 0.7013 14 8 2.0027 6.0008 0.4301 15 7 3.4781 7.5296 1.0686 16 6 2.4428 8.5637 1.1397 17 6 2.3291 9.2534 -0.1954 18 1 2.9647 8.9520 -1.0147 19 6 1.4136 10.2693 -0.3707 20 7 0.6399 10.6368 0.6274 21 14 1.2731 11.1248 -2.0253 22 1 2.2481 10.5300 -2.9744 23 1 1.5618 12.5721 -1.8604 24 1 -0.1028 10.9519 -2.5567 25 6 4.8673 7.8603 1.3956 26 6 5.1069 7.6348 2.8899 27 6 6.5029 7.9664 3.2185 28 7 7.5790 8.2242 3.4737 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 0.5140 -0.8899 31 1 -0.3634 -1.0275 0.0005 32 1 1.8933 -0.5139 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 3.6751 1.1184 -2.1283 35 1 4.5507 -0.1724 -1.2492 36 1 5.9625 1.6039 -2.7039 37 1 6.5572 1.1584 -1.0721 38 1 4.9286 3.6239 -1.8982 39 1 6.4178 3.5591 -0.9042 40 1 2.8599 3.6760 0.8258 41 1 4.9784 5.5072 -0.0945 42 1 4.6765 5.0880 1.6088 43 1 2.7100 9.2934 1.9041 44 1 1.4875 8.1045 1.3940 45 1 0.7131 10.1928 1.4867 46 1 5.5379 7.2224 0.8199 47 1 5.0597 8.9047 1.1504 48 1 4.4364 8.2726 3.4657 49 1 4.9146 6.5903 3.1352 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000348470613.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:34 Heat of formation + Delta-G solvation = -38.500305 kcal Electronic energy + Delta-G solvation = -27428.121468 eV Core-core repulsion = 23708.128150 eV Total energy + Delta-G solvation = -3719.993319 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.90778 -39.37895 -38.04253 -36.80793 -35.39437 -34.93762 -33.57265 -32.14529 -30.19878 -29.73348 -28.28917 -26.18764 -25.35673 -24.50172 -24.04312 -21.82044 -20.95327 -20.19191 -18.97131 -18.65635 -18.06817 -17.45667 -17.24346 -16.79341 -16.29695 -16.06527 -15.95052 -15.70368 -15.63953 -15.60333 -14.90047 -14.83114 -14.71481 -14.45729 -14.13003 -13.84719 -13.60715 -13.59801 -13.36237 -13.33449 -13.10841 -12.88257 -12.85711 -12.54648 -12.45177 -12.39189 -12.14777 -12.05800 -11.95285 -11.93383 -11.90504 -11.66697 -11.52553 -11.14163 -10.61410 -10.54494 -10.46943 -9.50537 -9.34343 -8.60995 -8.49800 -6.35813 0.75700 1.52737 1.61953 1.63502 1.76172 1.77281 1.78771 1.85756 2.19965 2.57341 3.01625 3.18269 3.33479 3.51304 3.57590 3.76596 3.97480 4.04132 4.06761 4.11150 4.14870 4.26893 4.37213 4.41287 4.42969 4.47547 4.53118 4.56352 4.65392 4.74782 4.79566 4.83644 4.86824 4.93008 4.96981 5.00447 5.07302 5.09844 5.17997 5.23184 5.24308 5.49369 5.59582 5.91909 6.01239 6.25362 6.36354 6.54860 6.56237 6.72417 7.36818 7.50327 8.75188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008660 B = 0.003285 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3232.474499 B = 8520.536000 C =10268.342517 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.094 4.094 3 S -0.276 6.276 4 C -0.055 4.055 5 H 0.103 0.897 6 C -0.113 4.113 7 C -0.113 4.113 8 C -0.117 4.117 9 C 0.102 3.898 10 H 0.072 0.928 11 N -0.681 5.681 12 C 0.053 3.947 13 C 0.499 3.501 14 O -0.575 6.575 15 N -0.596 5.596 16 C 0.248 3.752 17 C -0.613 4.613 18 H 0.043 0.957 19 C -0.029 4.029 20 N -0.935 5.935 21 Si 1.116 2.884 22 H -0.276 1.276 23 H -0.272 1.272 24 H -0.286 1.286 25 C 0.114 3.886 26 C -0.037 4.037 27 C 0.245 3.755 28 N -0.485 5.485 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.089 0.911 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.063 0.937 35 H 0.083 0.917 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.057 0.943 39 H 0.081 0.919 40 H 0.349 0.651 41 H 0.114 0.886 42 H 0.091 0.909 43 H 0.029 0.971 44 H -0.004 1.004 45 H 0.258 0.742 46 H 0.107 0.893 47 H 0.081 0.919 48 H 0.119 0.881 49 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.562 -23.280 0.789 26.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.243 4.243 3 S -0.049 6.049 4 C -0.184 4.184 5 H 0.121 0.879 6 C -0.152 4.152 7 C -0.152 4.152 8 C -0.156 4.156 9 C -0.008 4.008 10 H 0.089 0.911 11 N -0.319 5.319 12 C -0.078 4.078 13 C 0.288 3.712 14 O -0.453 6.453 15 N -0.328 5.328 16 C 0.126 3.874 17 C -0.652 4.652 18 H 0.062 0.938 19 C -0.228 4.228 20 N -0.572 5.572 21 Si 0.939 3.061 22 H -0.201 1.201 23 H -0.197 1.197 24 H -0.212 1.212 25 C -0.010 4.010 26 C -0.078 4.078 27 C -0.072 4.072 28 N -0.163 5.163 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.106 0.894 34 H 0.082 0.918 35 H 0.102 0.898 36 H 0.093 0.907 37 H 0.104 0.896 38 H 0.076 0.924 39 H 0.099 0.901 40 H 0.173 0.827 41 H 0.132 0.868 42 H 0.108 0.892 43 H 0.047 0.953 44 H 0.015 0.985 45 H 0.068 0.932 46 H 0.125 0.875 47 H 0.099 0.901 48 H 0.136 0.864 49 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.154 -20.773 -0.397 23.581 hybrid contribution 0.603 -2.049 1.786 2.784 sum 11.757 -22.822 1.389 25.710 Atomic orbital electron populations 1.21490 0.92453 1.03166 1.02271 1.23414 1.00149 0.95400 1.05288 1.88012 1.06548 1.12598 1.97735 1.24031 0.92297 0.99702 1.02378 0.87853 1.22696 0.97876 1.00165 0.94452 1.22420 0.96648 0.94231 1.01870 1.22490 0.98892 0.98036 0.96171 1.22113 0.91825 0.87625 0.99252 0.91053 1.60303 1.11519 1.01681 1.58366 1.21912 0.94750 0.88682 1.02497 1.21267 0.90085 0.83652 0.76239 1.90689 1.23623 1.81546 1.49444 1.47917 1.09197 1.09147 1.66510 1.18881 0.86679 0.85659 0.96157 1.22617 1.23312 1.20604 0.98655 0.93848 1.27112 0.92210 0.96614 1.06867 1.70864 1.39564 1.43364 1.03444 0.82926 0.76488 0.75732 0.70950 1.20128 1.19745 1.21213 1.21508 0.81965 1.03814 0.93731 1.19800 0.83590 1.06419 0.97951 1.29051 0.94492 0.91680 0.92013 1.81239 1.14041 1.10783 1.10192 0.92758 0.92913 0.89226 0.89450 0.89443 0.91787 0.89813 0.90672 0.89612 0.92386 0.90060 0.82685 0.86838 0.89177 0.95302 0.98548 0.93200 0.87516 0.90061 0.86350 0.84677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.25 9.92 71.98 0.71 -1.54 16 2 C -0.09 -1.55 6.55 71.98 0.47 -1.08 16 3 S -0.28 -6.59 18.21 -56.49 -1.03 -7.62 16 4 C -0.05 -0.94 3.41 31.32 0.11 -0.83 16 5 H 0.10 1.40 8.14 -2.38 -0.02 1.38 16 6 C -0.11 -1.63 6.26 31.67 0.20 -1.43 16 7 C -0.11 -1.41 6.91 31.89 0.22 -1.19 16 8 C -0.12 -1.96 5.87 31.67 0.19 -1.77 16 9 C 0.10 1.87 3.21 45.64 0.15 2.02 16 10 H 0.07 1.02 8.02 -2.39 -0.02 1.00 16 11 N -0.68 -18.12 5.07 -491.84 -2.49 -20.61 16 12 C 0.05 1.31 4.54 85.56 0.39 1.70 16 13 C 0.50 18.74 7.71 87.66 0.68 19.42 16 14 O -0.57 -28.60 15.78 -3.02 -0.05 -28.65 16 15 N -0.60 -21.87 2.46 -826.15 -2.03 -23.90 16 16 C 0.25 12.15 4.47 85.63 0.38 12.53 16 17 C -0.61 -34.28 9.39 25.60 0.24 -34.04 16 18 H 0.04 2.46 7.81 -2.91 -0.02 2.43 16 19 C -0.03 -1.69 5.46 84.65 0.46 -1.23 16 20 N -0.93 -56.76 13.65 21.45 0.29 -56.47 16 21 Si 1.12 51.34 29.90 68.60 2.05 53.39 16 22 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 23 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 24 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 25 C 0.11 2.83 5.17 86.38 0.45 3.28 16 26 C -0.04 -0.65 6.03 28.79 0.17 -0.48 16 27 C 0.25 5.19 15.43 89.45 1.38 6.57 16 28 N -0.48 -13.10 18.53 20.00 0.37 -12.73 16 29 H 0.05 1.00 8.14 -2.39 -0.02 0.99 16 30 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 32 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 34 H 0.06 1.20 7.81 -2.39 -0.02 1.18 16 35 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.07 0.91 8.14 -2.38 -0.02 0.89 16 37 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 38 H 0.06 1.31 8.05 -2.39 -0.02 1.29 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.35 10.54 6.19 -96.65 -0.60 9.94 16 41 H 0.11 2.45 6.93 -2.39 -0.02 2.43 16 42 H 0.09 1.52 7.15 -2.39 -0.02 1.50 16 43 H 0.03 1.37 7.94 -2.39 -0.02 1.35 16 44 H 0.00 -0.20 7.29 -2.38 -0.02 -0.22 16 45 H 0.26 15.65 7.22 -92.71 -0.67 14.98 16 46 H 0.11 2.01 6.44 -2.39 -0.02 1.99 16 47 H 0.08 2.26 8.07 -2.39 -0.02 2.24 16 48 H 0.12 2.18 8.14 -2.39 -0.02 2.16 16 49 H 0.14 1.69 7.22 -2.39 -0.02 1.67 16 Total: -1.00 -78.79 410.95 3.75 -75.05 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: 0.44 Total: 19.61 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: 6.19 Total: 1.92 kcal Atomic # 7 Polarization: -109.85 SS G_CDS: -3.86 Total: -113.71 kcal Atomic # 8 Polarization: -28.60 SS G_CDS: -0.05 Total: -28.65 kcal Atomic # 14 Polarization: 51.34 SS G_CDS: 2.05 Total: 53.39 kcal Atomic # 16 Polarization: -6.59 SS G_CDS: -1.03 Total: -7.62 kcal Total: -78.79 3.75 -75.05 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348470613.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.546 kcal (2) G-P(sol) polarization free energy of solvation -78.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.046 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds