Wall clock time and date at job start Sat Apr 11 2020 05:44:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34223 * 117.00342 * 2 1 4 4 O 1.20831 * 119.99755 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00204 * 179.97438 * 3 2 1 6 6 H 1.09000 * 110.43275 * 59.30300 * 5 3 2 7 7 C 1.54813 * 110.49034 * 296.75278 * 5 3 2 8 8 C 1.55221 * 101.99027 * 220.51644 * 7 5 3 9 9 O 1.44388 * 103.56476 * 36.88056 * 8 7 5 10 10 C 1.43744 * 106.97437 * 320.01375 * 9 8 7 11 11 H 1.08996 * 109.87851 * 145.93698 * 10 9 8 12 12 C 1.53003 * 109.99970 * 267.01612 * 10 9 8 13 13 C 1.53039 * 109.45816 * 303.42398 * 12 10 9 14 14 C 1.53198 * 109.30819 * 178.61758 * 13 12 10 15 15 N 1.46920 * 108.77573 * 54.63405 * 14 13 12 16 16 C 1.34774 * 120.62906 * 126.37116 * 15 14 13 17 17 O 1.21282 * 120.00509 * 180.02562 * 16 15 14 18 18 C 1.50706 * 120.00424 * 0.02562 * 16 15 14 19 19 C 1.52994 * 109.47572 * 179.97438 * 18 16 15 20 20 C 1.50699 * 109.47111 * 180.02562 * 19 18 16 21 21 H 1.08001 * 120.00059 * 359.97438 * 20 19 18 22 22 C 1.37878 * 119.99946 * 180.02562 * 20 19 18 23 23 N 1.31517 * 120.00098 * 180.02562 * 22 20 19 24 24 Si 1.86800 * 120.00037 * 359.97438 * 22 20 19 25 25 H 1.48493 * 109.47373 * 90.00076 * 24 22 20 26 26 H 1.48499 * 109.46981 * 210.00205 * 24 22 20 27 27 H 1.48502 * 109.46932 * 330.00206 * 24 22 20 28 28 C 1.46924 * 118.74078 * 306.38613 * 15 14 13 29 29 C 1.53038 * 109.45753 * 183.35588 * 12 10 9 30 30 H 1.08988 * 109.47296 * 300.00314 * 1 2 3 31 31 H 1.09003 * 109.47475 * 179.97438 * 1 2 3 32 32 H 1.09004 * 109.46685 * 60.00207 * 1 2 3 33 33 H 1.08995 * 110.90467 * 338.64820 * 7 5 3 34 34 H 1.08999 * 110.90054 * 102.24169 * 7 5 3 35 35 H 1.08993 * 110.52141 * 278.38615 * 8 7 5 36 36 H 1.09001 * 110.64213 * 155.43312 * 8 7 5 37 37 H 1.08995 * 109.45764 * 63.38538 * 12 10 9 38 38 H 1.09006 * 109.49810 * 298.56138 * 13 12 10 39 39 H 1.08995 * 109.49952 * 58.66630 * 13 12 10 40 40 H 1.09001 * 109.58202 * 294.84132 * 14 13 12 41 41 H 1.09002 * 109.69941 * 174.49489 * 14 13 12 42 42 H 1.09002 * 109.46721 * 300.00244 * 18 16 15 43 43 H 1.09002 * 109.46781 * 59.99968 * 18 16 15 44 44 H 1.09002 * 109.47360 * 299.99930 * 19 18 16 45 45 H 1.09002 * 109.47030 * 60.00198 * 19 18 16 46 46 H 0.96999 * 120.00075 * 180.02562 * 23 22 20 47 47 H 1.08998 * 109.58900 * 293.82394 * 28 15 14 48 48 H 1.09000 * 109.70542 * 173.46497 * 28 15 14 49 49 H 1.08999 * 109.49965 * 301.33640 * 29 12 10 50 50 H 1.09005 * 109.49950 * 61.40313 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9740 0.7737 -0.8774 7 6 4.1412 0.6515 1.2959 8 6 5.2850 1.6395 1.6491 9 8 4.7466 2.9271 1.2791 10 6 4.0295 2.7438 0.0469 11 1 3.1644 3.4062 0.0195 12 6 4.9473 3.0377 -1.1415 13 6 5.5107 4.4547 -1.0123 14 6 6.4560 4.7329 -2.1853 15 7 5.7372 4.4815 -3.4417 16 6 5.6814 5.4258 -4.4017 17 8 5.0845 5.2063 -5.4344 18 6 6.3608 6.7546 -4.1921 19 6 6.1469 7.6368 -5.4237 20 6 6.8268 8.9652 -5.2142 21 1 7.3580 9.1609 -4.2944 22 6 6.7698 9.9313 -6.1963 23 7 7.3636 11.0905 -6.0138 24 14 5.8505 9.5931 -7.7869 25 1 4.4340 10.0133 -7.6389 26 1 6.4801 10.3562 -8.8944 27 1 5.9067 8.1408 -8.0918 28 6 5.0800 3.1812 -3.6317 29 6 4.1501 2.9204 -2.4425 30 1 -0.3633 0.5138 0.8898 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3633 0.5138 -0.8901 33 1 3.3888 0.6299 2.0842 34 1 4.5324 -0.3480 1.1061 35 1 6.1778 1.4147 1.0656 36 1 5.5045 1.6075 2.7163 37 1 5.7679 2.3204 -1.1525 38 1 4.6921 5.1744 -1.0262 39 1 6.0586 4.5443 -0.0743 40 1 7.3216 4.0736 -2.1212 41 1 6.7847 5.7717 -2.1539 42 1 5.9372 7.2448 -3.3155 43 1 7.4285 6.5967 -4.0397 44 1 6.5707 7.1463 -6.3000 45 1 5.0792 7.7947 -5.5764 46 1 7.3232 11.7702 -6.7046 47 1 5.8334 2.3954 -3.6857 48 1 4.4990 3.1943 -4.5538 49 1 3.7297 1.9180 -2.5225 50 1 3.3440 3.6541 -2.4427 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358620458.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:48 Heat of formation + Delta-G solvation = -178.268087 kcal Electronic energy + Delta-G solvation = -30448.123922 eV Core-core repulsion = 26247.024196 eV Total energy + Delta-G solvation = -4201.099727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.51226 -40.14870 -39.38334 -37.10758 -36.92632 -33.65597 -33.43632 -32.93044 -31.60291 -30.75594 -29.42318 -28.25146 -26.48221 -25.37873 -23.50720 -23.10265 -22.51627 -21.25113 -20.65466 -20.25681 -18.76181 -18.12956 -17.40995 -17.26069 -17.05321 -16.44461 -16.21818 -15.94897 -15.44168 -15.23429 -15.03453 -14.46570 -14.26820 -13.99846 -13.87576 -13.66903 -13.60244 -13.42368 -13.05858 -12.83754 -12.53092 -12.51229 -12.44490 -12.27075 -12.24854 -11.80652 -11.65408 -11.43681 -11.39522 -11.29994 -11.27981 -10.96172 -10.93179 -10.65274 -10.60143 -10.08602 -9.98768 -9.94874 -9.75261 -9.19242 -9.09792 -8.49681 -8.44480 -6.00136 -3.98574 1.69391 2.14060 3.12178 3.24342 3.36227 3.40414 3.46715 3.58036 3.83135 4.09700 4.11320 4.47324 4.51498 4.53782 4.58935 4.62997 4.64903 4.68298 4.72916 4.87039 4.98057 5.05174 5.09844 5.17215 5.19644 5.21676 5.29428 5.35381 5.38526 5.44136 5.45509 5.58457 5.71452 5.74947 5.79422 5.88427 5.92585 6.00832 6.10687 6.12591 6.21483 6.44316 6.66938 6.77282 7.23015 7.40125 7.47022 7.67550 7.82760 8.52560 8.66375 9.02988 9.63101 11.12674 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019183 B = 0.002291 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1459.309540 B =12218.685211 C =12931.318372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.357 6.357 3 C 0.470 3.530 4 O -0.496 6.496 5 C -0.117 4.117 6 H 0.125 0.875 7 C -0.141 4.141 8 C 0.043 3.957 9 O -0.358 6.358 10 C 0.089 3.911 11 H 0.118 0.882 12 C -0.101 4.101 13 C -0.124 4.124 14 C 0.108 3.892 15 N -0.623 5.623 16 C 0.513 3.487 17 O -0.542 6.542 18 C -0.121 4.121 19 C 0.001 3.999 20 C -0.523 4.523 21 H 0.073 0.927 22 C 0.068 3.932 23 N -0.904 5.904 24 Si 0.877 3.123 25 H -0.277 1.277 26 H -0.289 1.289 27 H -0.261 1.261 28 C 0.113 3.887 29 C -0.130 4.130 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.065 0.935 33 H 0.082 0.918 34 H 0.095 0.905 35 H 0.067 0.933 36 H 0.098 0.902 37 H 0.076 0.924 38 H 0.070 0.930 39 H 0.084 0.916 40 H 0.065 0.935 41 H 0.095 0.905 42 H 0.085 0.915 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.018 0.982 46 H 0.263 0.737 47 H 0.061 0.939 48 H 0.092 0.908 49 H 0.067 0.933 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.568 -28.417 18.477 34.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.274 6.274 3 C 0.312 3.688 4 O -0.382 6.382 5 C -0.136 4.136 6 H 0.143 0.857 7 C -0.179 4.179 8 C -0.033 4.033 9 O -0.276 6.276 10 C 0.031 3.969 11 H 0.136 0.864 12 C -0.120 4.120 13 C -0.162 4.162 14 C -0.015 4.015 15 N -0.359 5.359 16 C 0.304 3.696 17 O -0.418 6.418 18 C -0.161 4.161 19 C -0.037 4.037 20 C -0.561 4.561 21 H 0.091 0.909 22 C -0.133 4.133 23 N -0.543 5.543 24 Si 0.704 3.296 25 H -0.203 1.203 26 H -0.215 1.215 27 H -0.185 1.185 28 C -0.010 4.010 29 C -0.168 4.168 30 H 0.083 0.917 31 H 0.121 0.879 32 H 0.084 0.916 33 H 0.100 0.900 34 H 0.113 0.887 35 H 0.086 0.914 36 H 0.116 0.884 37 H 0.094 0.906 38 H 0.089 0.911 39 H 0.102 0.898 40 H 0.083 0.917 41 H 0.113 0.887 42 H 0.104 0.896 43 H 0.103 0.897 44 H 0.041 0.959 45 H 0.037 0.963 46 H 0.072 0.928 47 H 0.079 0.921 48 H 0.110 0.890 49 H 0.086 0.914 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.066 -27.850 17.927 34.089 hybrid contribution -0.743 -0.354 -0.865 1.194 sum -8.809 -28.204 17.062 34.120 Atomic orbital electron populations 1.23325 0.75889 1.03903 1.02860 1.86490 1.23748 1.33107 1.84046 1.23362 0.91576 0.81544 0.72338 1.90702 1.66766 1.36188 1.44558 1.22554 0.88471 0.99938 1.02646 0.85714 1.23176 0.98998 1.00448 0.95267 1.23652 0.95493 0.82513 1.01660 1.89001 1.70429 1.29203 1.38980 1.22930 0.95523 0.93402 0.85090 0.86413 1.21609 0.98024 0.98785 0.93596 1.21871 1.00105 0.95623 0.98644 1.21738 0.94045 1.02998 0.82726 1.48261 1.54750 1.15079 1.17774 1.21554 0.79615 0.86155 0.82293 1.90633 1.43436 1.80498 1.27255 1.21685 1.00340 0.90953 1.03080 1.19377 0.97346 0.94449 0.92488 1.21114 1.33830 0.96902 1.04294 0.90925 1.24973 0.95041 0.94835 0.98428 1.69915 1.44235 1.05495 1.34631 0.86797 0.80160 0.79246 0.83358 1.20260 1.21469 1.18545 1.21422 0.95657 0.85068 0.98813 1.21968 0.98781 1.02020 0.94068 0.91742 0.87883 0.91610 0.89969 0.88659 0.91444 0.88357 0.90554 0.91099 0.89754 0.91694 0.88681 0.89629 0.89657 0.95874 0.96325 0.92754 0.92073 0.89010 0.91427 0.90870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 10.56 101.05 1.07 1.26 16 2 O -0.36 -2.78 10.56 -39.24 -0.41 -3.20 16 3 C 0.47 4.26 7.14 36.01 0.26 4.52 16 4 O -0.50 -6.05 15.01 -18.75 -0.28 -6.33 16 5 C -0.12 -0.80 2.65 -90.24 -0.24 -1.04 16 6 H 0.13 0.65 6.69 -51.93 -0.35 0.30 16 7 C -0.14 -0.71 6.71 -24.60 -0.17 -0.87 16 8 C 0.04 0.24 7.68 38.33 0.29 0.54 16 9 O -0.36 -3.28 10.39 -35.23 -0.37 -3.65 16 10 C 0.09 0.78 2.62 -26.15 -0.07 0.71 16 11 H 0.12 1.33 6.44 -51.93 -0.33 0.99 16 12 C -0.10 -0.87 1.71 -90.58 -0.15 -1.02 16 13 C -0.12 -1.23 5.21 -26.61 -0.14 -1.37 16 14 C 0.11 1.20 6.34 -3.71 -0.02 1.18 16 15 N -0.62 -8.91 2.97 -172.77 -0.51 -9.43 16 16 C 0.51 9.77 7.70 -10.98 -0.08 9.69 16 17 O -0.54 -12.37 15.40 5.56 0.09 -12.28 16 18 C -0.12 -2.42 3.98 -27.88 -0.11 -2.53 16 19 C 0.00 0.03 3.33 -27.89 -0.09 -0.06 16 20 C -0.52 -15.19 9.66 -34.44 -0.33 -15.53 16 21 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 22 C 0.07 2.05 5.47 -17.82 -0.10 1.96 16 23 N -0.90 -28.31 13.96 55.43 0.77 -27.54 16 24 Si 0.88 22.96 27.47 -169.99 -4.67 18.29 16 25 H -0.28 -7.15 7.11 56.52 0.40 -6.74 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.26 -6.81 6.54 56.52 0.37 -6.44 16 28 C 0.11 1.36 6.43 -3.71 -0.02 1.34 16 29 C -0.13 -1.27 5.18 -26.61 -0.14 -1.41 16 30 H 0.06 0.37 8.13 -51.94 -0.42 -0.06 16 31 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.39 8.13 -51.93 -0.42 -0.03 16 33 H 0.08 0.45 7.86 -51.93 -0.41 0.04 16 34 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 36 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 38 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.08 0.77 7.58 -51.93 -0.39 0.38 16 40 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 41 H 0.09 1.10 5.93 -51.93 -0.31 0.79 16 42 H 0.09 1.60 7.69 -51.93 -0.40 1.20 16 43 H 0.09 1.58 7.94 -51.93 -0.41 1.16 16 44 H 0.02 0.61 7.16 -51.93 -0.37 0.24 16 45 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 46 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 47 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 48 H 0.09 1.30 7.01 -51.93 -0.36 0.93 16 49 H 0.07 0.53 6.77 -51.93 -0.35 0.18 16 50 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 393.33 15.07 5.93 5.93 Total: -1.00 -36.82 393.33 -7.83 -44.65 By element: Atomic # 1 Polarization: 4.52 SS G_CDS: -8.32 Total: -3.79 kcal Atomic # 6 Polarization: -2.60 SS G_CDS: -0.05 Total: -2.65 kcal Atomic # 7 Polarization: -37.22 SS G_CDS: 0.26 Total: -36.96 kcal Atomic # 8 Polarization: -24.48 SS G_CDS: -0.98 Total: -25.46 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.67 Total: 18.29 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -36.82 -7.83 -44.65 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358620458.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -133.621 kcal (2) G-P(sol) polarization free energy of solvation -36.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -170.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.647 kcal (6) G-S(sol) free energy of system = (1) + (5) -178.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds