Wall clock time and date at job start Sat Apr 11 2020 05:44:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99881 * 2 1 4 4 O 1.20834 * 120.00411 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99950 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.43827 * 304.50650 * 5 3 2 7 7 C 1.54812 * 110.48831 * 181.81483 * 5 3 2 8 8 C 1.54997 * 102.09235 * 220.44722 * 7 5 3 9 9 O 1.44379 * 103.49464 * 37.02107 * 8 7 5 10 10 C 1.43746 * 106.97260 * 319.94482 * 9 8 7 11 11 H 1.09001 * 109.87888 * 267.08407 * 10 9 8 12 12 C 1.53005 * 109.87820 * 145.93554 * 10 9 8 13 13 C 1.53040 * 109.45821 * 71.44370 * 12 10 9 14 14 C 1.53196 * 109.31161 * 178.59811 * 13 12 10 15 15 N 1.46925 * 108.75901 * 54.65612 * 14 13 12 16 16 C 1.34785 * 120.62566 * 126.36702 * 15 14 13 17 17 O 1.21286 * 119.99711 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00080 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47047 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47047 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00100 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99722 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99778 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46932 * 59.99961 * 24 22 20 26 26 H 1.48494 * 109.46997 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46910 * 300.00063 * 24 22 20 28 28 C 1.46928 * 118.74440 * 306.38381 * 15 14 13 29 29 C 1.53036 * 109.45966 * 311.39096 * 12 10 9 30 30 H 1.08996 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47330 * 59.99847 * 1 2 3 32 32 H 1.09006 * 109.46833 * 299.99560 * 1 2 3 33 33 H 1.09001 * 110.90515 * 338.63884 * 7 5 3 34 34 H 1.08996 * 110.91123 * 102.24462 * 7 5 3 35 35 H 1.09000 * 110.61687 * 278.52093 * 8 7 5 36 36 H 1.09003 * 110.75458 * 155.59161 * 8 7 5 37 37 H 1.09002 * 109.45963 * 191.42126 * 12 10 9 38 38 H 1.08992 * 109.50181 * 298.56835 * 13 12 10 39 39 H 1.09006 * 109.49419 * 58.66792 * 13 12 10 40 40 H 1.09004 * 109.59862 * 294.87720 * 14 13 12 41 41 H 1.08996 * 109.70192 * 174.50791 * 14 13 12 42 42 H 1.09004 * 109.46942 * 300.00038 * 18 16 15 43 43 H 1.08991 * 109.46900 * 60.00385 * 18 16 15 44 44 H 1.09010 * 109.46923 * 299.99860 * 19 18 16 45 45 H 1.08996 * 109.47356 * 59.99352 * 19 18 16 46 46 H 0.97000 * 119.99731 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58298 * 293.82209 * 28 15 14 48 48 H 1.09003 * 109.70237 * 173.47172 * 28 15 14 49 49 H 1.09005 * 109.49989 * 301.33823 * 29 12 10 50 50 H 1.09005 * 109.49949 * 61.40220 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9770 0.7168 0.8408 7 6 4.0316 2.7507 0.0455 8 6 5.2272 2.7452 -0.9409 9 8 4.8034 1.8354 -1.9789 10 6 4.1339 0.7413 -1.3302 11 1 4.8427 -0.0633 -1.1343 12 6 2.9945 0.2307 -2.2146 13 6 3.5777 -0.5036 -3.4241 14 6 2.4342 -1.0435 -4.2888 15 7 1.5368 0.0677 -4.6329 16 6 1.2204 0.3221 -5.9182 17 8 0.4788 1.2427 -6.1894 18 6 1.7881 -0.5375 -7.0182 19 6 1.2760 -0.0387 -8.3709 20 6 1.8432 -0.8986 -9.4709 21 1 2.5032 -1.7185 -9.2294 22 6 1.5194 -0.6384 -10.7856 23 7 0.7160 0.3604 -11.0798 24 14 2.2219 -1.7048 -12.1491 25 1 1.7950 -3.1125 -11.9462 26 1 1.7250 -1.2206 -13.4620 27 1 3.7048 -1.6285 -12.1228 28 6 0.9910 0.8968 -3.5496 29 6 2.1507 1.4145 -2.6930 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 3.2433 3.4181 -0.3028 34 1 4.3565 3.0251 1.0490 35 1 6.1276 2.3753 -0.4505 36 1 5.3958 3.7417 -1.3492 37 1 2.3685 -0.4533 -1.6416 38 1 4.1836 0.1864 -4.0112 39 1 4.1976 -1.3325 -3.0822 40 1 1.8814 -1.8007 -3.7328 41 1 2.8388 -1.4824 -5.2008 42 1 2.8765 -0.4806 -6.9987 43 1 1.4755 -1.5710 -6.8697 44 1 0.1875 -0.0952 -8.3907 45 1 1.5888 0.9949 -8.5192 46 1 0.4880 0.5432 -12.0047 47 1 0.3206 0.2976 -2.9333 48 1 0.4438 1.7396 -3.9718 49 1 1.7548 1.9511 -1.8307 50 1 2.7703 2.0866 -3.2867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358620459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:51 Heat of formation + Delta-G solvation = -164.169994 kcal Electronic energy + Delta-G solvation = -31495.167234 eV Core-core repulsion = 27294.678847 eV Total energy + Delta-G solvation = -4200.488387 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.89236 -39.74966 -39.26825 -37.09189 -36.77561 -33.53547 -33.42494 -32.68800 -31.51971 -30.48172 -29.50616 -27.91845 -26.06370 -25.18284 -23.47617 -23.02832 -22.86604 -21.50714 -20.52285 -20.07828 -18.56638 -18.00839 -17.40946 -17.19095 -16.79627 -16.45452 -15.99771 -15.58018 -15.44347 -15.26201 -15.10586 -14.38448 -14.17947 -14.01245 -13.89633 -13.68116 -13.41555 -13.16887 -12.79889 -12.64214 -12.46139 -12.39509 -12.22922 -12.06818 -11.96737 -11.79599 -11.60620 -11.34366 -11.18174 -11.08120 -10.92813 -10.88644 -10.85417 -10.60262 -10.53057 -10.24374 -9.91061 -9.89759 -9.54661 -9.11986 -8.90822 -8.33372 -8.25239 -5.91706 -3.96083 1.75125 2.23475 3.30071 3.37127 3.38388 3.41955 3.44004 3.44505 3.78081 4.10158 4.33940 4.49816 4.50851 4.60406 4.65733 4.69305 4.77714 4.80522 4.87891 4.90168 5.09090 5.18671 5.21384 5.26562 5.31420 5.36596 5.38493 5.42908 5.50209 5.57800 5.63797 5.70702 5.75743 5.82006 5.84488 5.98877 6.09775 6.15310 6.27572 6.28236 6.38845 6.52122 6.83416 6.98400 7.30899 7.78730 7.85884 7.92117 8.12432 8.43454 8.83846 9.12454 9.67053 11.19279 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002553 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.847740 B =10965.943537 C =11494.176816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.353 6.353 3 C 0.484 3.516 4 O -0.499 6.499 5 C -0.120 4.120 6 H 0.120 0.880 7 C -0.146 4.146 8 C 0.046 3.954 9 O -0.357 6.357 10 C 0.096 3.904 11 H 0.085 0.915 12 C -0.109 4.109 13 C -0.124 4.124 14 C 0.110 3.890 15 N -0.623 5.623 16 C 0.512 3.488 17 O -0.536 6.536 18 C -0.128 4.128 19 C 0.037 3.963 20 C -0.526 4.526 21 H 0.055 0.945 22 C 0.058 3.942 23 N -0.890 5.890 24 Si 0.893 3.107 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 C 0.116 3.884 29 C -0.153 4.153 30 H 0.104 0.896 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.100 0.900 34 H 0.088 0.912 35 H 0.064 0.936 36 H 0.099 0.901 37 H 0.105 0.895 38 H 0.075 0.925 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.093 0.907 42 H 0.079 0.921 43 H 0.078 0.922 44 H 0.023 0.977 45 H 0.023 0.977 46 H 0.261 0.739 47 H 0.053 0.947 48 H 0.089 0.911 49 H 0.084 0.916 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.848 -1.555 30.374 31.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.270 6.270 3 C 0.328 3.672 4 O -0.388 6.388 5 C -0.140 4.140 6 H 0.138 0.862 7 C -0.184 4.184 8 C -0.030 4.030 9 O -0.276 6.276 10 C 0.038 3.962 11 H 0.103 0.897 12 C -0.127 4.127 13 C -0.163 4.163 14 C -0.014 4.014 15 N -0.359 5.359 16 C 0.303 3.697 17 O -0.411 6.411 18 C -0.168 4.168 19 C 0.000 4.000 20 C -0.565 4.565 21 H 0.073 0.927 22 C -0.144 4.144 23 N -0.529 5.529 24 Si 0.721 3.279 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 C -0.007 4.007 29 C -0.190 4.190 30 H 0.122 0.878 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.117 0.883 37 H 0.122 0.878 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.111 0.889 42 H 0.097 0.903 43 H 0.096 0.904 44 H 0.041 0.959 45 H 0.041 0.959 46 H 0.071 0.929 47 H 0.071 0.929 48 H 0.108 0.892 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 7.139 -0.645 29.812 30.662 hybrid contribution 0.214 -0.579 -0.371 0.720 sum 7.352 -1.224 29.441 30.370 Atomic orbital electron populations 1.23385 0.75890 1.04122 1.02939 1.86528 1.23800 1.33015 1.83642 1.23037 0.91500 0.81667 0.71014 1.90677 1.66805 1.36247 1.45021 1.22630 0.88947 1.00395 1.02011 0.86169 1.23246 0.99701 0.93892 1.01512 1.23586 0.95749 0.95157 0.88530 1.89007 1.75014 1.33810 1.29725 1.22712 0.94162 0.90282 0.89028 0.89685 1.21843 0.95546 0.98255 0.97031 1.21910 0.97872 1.00276 0.96200 1.21673 0.90724 0.88671 1.00295 1.48278 1.49063 1.32356 1.06207 1.21575 0.80262 0.84995 0.82881 1.90652 1.36509 1.31445 1.82518 1.21869 1.00896 0.98514 0.95488 1.18896 0.96991 0.96766 0.87354 1.21188 1.29135 1.14749 0.91404 0.92682 1.25028 0.95213 0.95328 0.98820 1.69995 1.35168 1.28967 1.18742 0.86656 0.79356 0.80683 0.81250 1.20267 1.21310 1.20251 1.21402 0.95150 0.95665 0.88496 1.22402 0.97579 0.97790 1.01273 0.87794 0.91296 0.91788 0.88188 0.89338 0.91788 0.88299 0.87763 0.90582 0.90812 0.91899 0.88881 0.90302 0.90375 0.95898 0.95872 0.92926 0.92876 0.89227 0.89795 0.90307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.35 -2.89 8.11 -39.25 -0.32 -3.21 16 3 C 0.48 4.43 4.34 36.01 0.16 4.58 16 4 O -0.50 -5.87 13.39 -18.76 -0.25 -6.12 16 5 C -0.12 -0.84 3.49 -90.24 -0.31 -1.16 16 6 H 0.12 0.52 8.14 -51.93 -0.42 0.09 16 7 C -0.15 -0.98 6.54 -24.72 -0.16 -1.14 16 8 C 0.05 0.32 7.72 38.21 0.29 0.62 16 9 O -0.36 -3.61 9.97 -35.23 -0.35 -3.96 16 10 C 0.10 0.79 3.08 -26.15 -0.08 0.71 16 11 H 0.09 0.55 8.12 -51.93 -0.42 0.13 16 12 C -0.11 -1.06 1.51 -90.58 -0.14 -1.20 16 13 C -0.12 -1.28 5.28 -26.61 -0.14 -1.42 16 14 C 0.11 1.31 6.34 -3.71 -0.02 1.29 16 15 N -0.62 -9.89 2.97 -172.76 -0.51 -10.40 16 16 C 0.51 10.65 7.70 -10.98 -0.08 10.56 16 17 O -0.54 -13.43 15.40 5.55 0.09 -13.34 16 18 C -0.13 -2.72 3.98 -27.88 -0.11 -2.84 16 19 C 0.04 1.04 4.26 -27.88 -0.12 0.92 16 20 C -0.53 -15.23 9.11 -34.44 -0.31 -15.55 16 21 H 0.05 1.49 7.74 -52.49 -0.41 1.09 16 22 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 23 N -0.89 -27.96 13.29 55.43 0.74 -27.22 16 24 Si 0.89 21.97 29.54 -169.99 -5.02 16.95 16 25 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 26 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 27 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 28 C 0.12 1.67 6.43 -3.71 -0.02 1.65 16 29 C -0.15 -1.90 4.62 -26.62 -0.12 -2.03 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.54 7.25 -51.93 -0.38 0.16 16 32 H 0.06 0.40 8.13 -51.93 -0.42 -0.02 16 33 H 0.10 0.89 6.85 -51.93 -0.36 0.54 16 34 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 37 H 0.10 0.95 5.32 -51.93 -0.28 0.67 16 38 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.09 1.13 5.93 -51.93 -0.31 0.82 16 42 H 0.08 1.55 7.69 -51.93 -0.40 1.15 16 43 H 0.08 1.51 7.94 -51.93 -0.41 1.10 16 44 H 0.02 0.69 8.10 -51.92 -0.42 0.27 16 45 H 0.02 0.70 8.10 -51.93 -0.42 0.28 16 46 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 47 H 0.05 0.67 7.26 -51.93 -0.38 0.29 16 48 H 0.09 1.53 7.01 -51.93 -0.36 1.16 16 49 H 0.08 1.05 3.87 -51.93 -0.20 0.85 16 50 H 0.08 1.17 7.50 -51.93 -0.39 0.78 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -36.85 384.61 -8.12 -44.96 By element: Atomic # 1 Polarization: 6.72 SS G_CDS: -8.07 Total: -1.34 kcal Atomic # 6 Polarization: -1.90 SS G_CDS: -0.21 Total: -2.12 kcal Atomic # 7 Polarization: -37.85 SS G_CDS: 0.22 Total: -37.62 kcal Atomic # 8 Polarization: -25.79 SS G_CDS: -0.84 Total: -26.63 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -36.85 -8.12 -44.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358620459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.205 kcal (2) G-P(sol) polarization free energy of solvation -36.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.965 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds