Wall clock time and date at job start Sat Apr 11 2020 05:44:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34227 * 116.99881 * 2 1 4 4 O 1.20834 * 120.00411 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99950 * 180.02562 * 3 2 1 6 6 H 1.08995 * 110.43827 * 304.50650 * 5 3 2 7 7 C 1.54812 * 110.48831 * 181.81483 * 5 3 2 8 8 C 1.54997 * 102.09235 * 220.44722 * 7 5 3 9 9 O 1.44379 * 103.49464 * 37.02107 * 8 7 5 10 10 C 1.43746 * 106.97260 * 319.94482 * 9 8 7 11 11 H 1.09001 * 109.87888 * 267.08407 * 10 9 8 12 12 C 1.53005 * 109.87820 * 145.93554 * 10 9 8 13 13 C 1.53040 * 109.45821 * 71.44370 * 12 10 9 14 14 C 1.53196 * 109.31161 * 178.59811 * 13 12 10 15 15 N 1.46925 * 108.75901 * 54.65612 * 14 13 12 16 16 C 1.34785 * 120.62566 * 126.36702 * 15 14 13 17 17 O 1.21286 * 119.99711 * 180.02562 * 16 15 14 18 18 C 1.50700 * 120.00080 * 0.02562 * 16 15 14 19 19 C 1.52999 * 109.47047 * 180.02562 * 18 16 15 20 20 C 1.50700 * 109.47047 * 180.02562 * 19 18 16 21 21 H 1.07998 * 120.00100 * 359.97438 * 20 19 18 22 22 C 1.37876 * 119.99722 * 179.97438 * 20 19 18 23 23 N 1.31518 * 120.00103 * 0.02562 * 22 20 19 24 24 Si 1.86807 * 119.99778 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46932 * 59.99961 * 24 22 20 26 26 H 1.48494 * 109.46997 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.46910 * 300.00063 * 24 22 20 28 28 C 1.46928 * 118.74440 * 306.38381 * 15 14 13 29 29 C 1.53036 * 109.45966 * 311.39096 * 12 10 9 30 30 H 1.08996 * 109.47053 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.47330 * 59.99847 * 1 2 3 32 32 H 1.09006 * 109.46833 * 299.99560 * 1 2 3 33 33 H 1.09001 * 110.90515 * 338.63884 * 7 5 3 34 34 H 1.08996 * 110.91123 * 102.24462 * 7 5 3 35 35 H 1.09000 * 110.61687 * 278.52093 * 8 7 5 36 36 H 1.09003 * 110.75458 * 155.59161 * 8 7 5 37 37 H 1.09002 * 109.45963 * 191.42126 * 12 10 9 38 38 H 1.08992 * 109.50181 * 298.56835 * 13 12 10 39 39 H 1.09006 * 109.49419 * 58.66792 * 13 12 10 40 40 H 1.09004 * 109.59862 * 294.87720 * 14 13 12 41 41 H 1.08996 * 109.70192 * 174.50791 * 14 13 12 42 42 H 1.09004 * 109.46942 * 300.00038 * 18 16 15 43 43 H 1.08991 * 109.46900 * 60.00385 * 18 16 15 44 44 H 1.09010 * 109.46923 * 299.99860 * 19 18 16 45 45 H 1.08996 * 109.47356 * 59.99352 * 19 18 16 46 46 H 0.97000 * 119.99731 * 180.02562 * 23 22 20 47 47 H 1.09000 * 109.58298 * 293.82209 * 28 15 14 48 48 H 1.09003 * 109.70237 * 173.47172 * 28 15 14 49 49 H 1.09005 * 109.49989 * 301.33823 * 29 12 10 50 50 H 1.09005 * 109.49949 * 61.40220 * 29 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2749 -0.0006 6 1 3.9770 0.7168 0.8408 7 6 4.0316 2.7507 0.0455 8 6 5.2272 2.7452 -0.9409 9 8 4.8034 1.8354 -1.9789 10 6 4.1339 0.7413 -1.3302 11 1 4.8427 -0.0633 -1.1343 12 6 2.9945 0.2307 -2.2146 13 6 3.5777 -0.5036 -3.4241 14 6 2.4342 -1.0435 -4.2888 15 7 1.5368 0.0677 -4.6329 16 6 1.2204 0.3221 -5.9182 17 8 0.4788 1.2427 -6.1894 18 6 1.7881 -0.5375 -7.0182 19 6 1.2760 -0.0387 -8.3709 20 6 1.8432 -0.8986 -9.4709 21 1 2.5032 -1.7185 -9.2294 22 6 1.5194 -0.6384 -10.7856 23 7 0.7160 0.3604 -11.0798 24 14 2.2219 -1.7048 -12.1491 25 1 1.7950 -3.1125 -11.9462 26 1 1.7250 -1.2206 -13.4620 27 1 3.7048 -1.6285 -12.1228 28 6 0.9910 0.8968 -3.5496 29 6 2.1507 1.4145 -2.6930 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 0.5138 0.8901 33 1 3.2433 3.4181 -0.3028 34 1 4.3565 3.0251 1.0490 35 1 6.1276 2.3753 -0.4505 36 1 5.3958 3.7417 -1.3492 37 1 2.3685 -0.4533 -1.6416 38 1 4.1836 0.1864 -4.0112 39 1 4.1976 -1.3325 -3.0822 40 1 1.8814 -1.8007 -3.7328 41 1 2.8388 -1.4824 -5.2008 42 1 2.8765 -0.4806 -6.9987 43 1 1.4755 -1.5710 -6.8697 44 1 0.1875 -0.0952 -8.3907 45 1 1.5888 0.9949 -8.5192 46 1 0.4880 0.5432 -12.0047 47 1 0.3206 0.2976 -2.9333 48 1 0.4438 1.7396 -3.9718 49 1 1.7548 1.9511 -1.8307 50 1 2.7703 2.0866 -3.2867 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358620459.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:50 Heat of formation + Delta-G solvation = -188.852390 kcal Electronic energy + Delta-G solvation = -31496.237543 eV Core-core repulsion = 27294.678847 eV Total energy + Delta-G solvation = -4201.558696 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.59494 -41.04463 -40.06917 -38.26057 -37.57336 -35.61752 -34.55742 -33.42233 -33.12854 -31.93741 -30.29187 -28.56174 -27.83643 -26.26290 -24.75097 -23.81311 -23.63298 -23.12738 -21.43060 -20.96663 -19.87919 -18.95180 -18.61404 -18.09245 -17.85586 -17.47923 -17.11793 -16.68587 -16.66123 -16.51003 -16.33891 -16.03649 -15.11581 -14.99080 -14.66579 -14.64197 -14.57383 -14.35518 -14.19035 -13.93080 -13.70561 -13.34636 -13.18607 -13.08588 -13.00632 -12.92409 -12.77660 -12.50910 -12.42367 -12.36858 -12.17964 -11.98299 -11.93760 -11.67745 -11.63361 -11.54216 -11.42580 -11.32846 -11.12027 -10.63456 -10.56646 -10.54542 -9.63489 -8.17898 -6.32782 1.07930 1.41829 1.47220 1.54857 1.63927 1.67741 2.04346 2.43560 2.88668 3.14721 3.22015 3.44102 3.66573 3.73855 3.82003 3.91160 3.96522 4.11184 4.16999 4.20768 4.24183 4.31264 4.33542 4.36827 4.43468 4.48156 4.50227 4.56647 4.67938 4.74038 4.77585 4.80728 4.83355 4.85749 4.88222 4.93580 5.00719 5.09916 5.14300 5.17585 5.36015 5.46962 5.47690 5.60099 5.62835 5.83830 5.95108 6.16400 6.40838 6.64961 6.85289 7.24705 7.37655 8.94920 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.019428 B = 0.002553 C = 0.002435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1440.847740 B =10965.943537 C =11494.176816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.350 6.350 3 C 0.480 3.520 4 O -0.534 6.534 5 C -0.117 4.117 6 H 0.159 0.841 7 C -0.145 4.145 8 C 0.044 3.956 9 O -0.390 6.390 10 C 0.096 3.904 11 H 0.117 0.883 12 C -0.106 4.106 13 C -0.118 4.118 14 C 0.098 3.902 15 N -0.610 5.610 16 C 0.507 3.493 17 O -0.596 6.596 18 C -0.113 4.113 19 C 0.044 3.956 20 C -0.543 4.543 21 H 0.078 0.922 22 C -0.009 4.009 23 N -0.940 5.940 24 Si 0.977 3.023 25 H -0.260 1.260 26 H -0.288 1.288 27 H -0.261 1.261 28 C 0.114 3.886 29 C -0.140 4.140 30 H 0.132 0.868 31 H 0.052 0.948 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.094 0.906 37 H 0.121 0.879 38 H 0.051 0.949 39 H 0.113 0.887 40 H 0.095 0.905 41 H 0.096 0.904 42 H 0.101 0.899 43 H 0.106 0.894 44 H -0.020 1.020 45 H -0.023 1.023 46 H 0.263 0.737 47 H 0.079 0.921 48 H 0.052 0.948 49 H 0.084 0.916 50 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.536 -5.194 32.599 34.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.266 6.266 3 C 0.326 3.674 4 O -0.425 6.425 5 C -0.136 4.136 6 H 0.177 0.823 7 C -0.182 4.182 8 C -0.032 4.032 9 O -0.309 6.309 10 C 0.038 3.962 11 H 0.135 0.865 12 C -0.124 4.124 13 C -0.156 4.156 14 C -0.023 4.023 15 N -0.344 5.344 16 C 0.297 3.703 17 O -0.476 6.476 18 C -0.152 4.152 19 C 0.006 3.994 20 C -0.581 4.581 21 H 0.096 0.904 22 C -0.206 4.206 23 N -0.580 5.580 24 Si 0.800 3.200 25 H -0.184 1.184 26 H -0.214 1.214 27 H -0.186 1.186 28 C -0.009 4.009 29 C -0.178 4.178 30 H 0.150 0.850 31 H 0.071 0.929 32 H 0.084 0.916 33 H 0.087 0.913 34 H 0.132 0.868 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.138 0.862 38 H 0.070 0.930 39 H 0.131 0.869 40 H 0.113 0.887 41 H 0.114 0.886 42 H 0.119 0.881 43 H 0.124 0.876 44 H -0.001 1.001 45 H -0.005 1.005 46 H 0.071 0.929 47 H 0.097 0.903 48 H 0.070 0.930 49 H 0.102 0.898 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 9.872 -4.335 32.107 33.869 hybrid contribution -0.674 0.608 -0.978 1.334 sum 9.197 -3.727 31.129 32.673 Atomic orbital electron populations 1.23561 0.75326 1.05744 1.02290 1.86519 1.24378 1.32402 1.83254 1.23586 0.92470 0.81396 0.69965 1.90675 1.67760 1.37430 1.46586 1.22787 0.87216 1.00761 1.02828 0.82335 1.23220 0.98751 0.93511 1.02729 1.23751 0.96692 0.94763 0.88016 1.88983 1.75437 1.34905 1.31598 1.22847 0.93980 0.90698 0.88680 0.86535 1.21881 0.96078 0.96980 0.97462 1.21893 0.97135 1.01001 0.95584 1.22110 0.91006 0.87825 1.01397 1.48272 1.48463 1.32924 1.04693 1.21497 0.79914 0.84298 0.84575 1.90630 1.39391 1.33897 1.83727 1.21622 1.01862 0.99572 0.92191 1.18678 0.94450 0.94657 0.91576 1.21675 1.29285 1.15233 0.91888 0.90360 1.26195 0.95373 0.96772 1.02254 1.70192 1.36970 1.31316 1.19491 0.85331 0.79029 0.78852 0.76774 1.18422 1.21389 1.18592 1.21498 0.96239 0.94867 0.88269 1.22253 0.96649 0.98691 1.00199 0.85003 0.92905 0.91610 0.91259 0.86777 0.89045 0.88821 0.86182 0.92986 0.86911 0.88688 0.88585 0.88116 0.87578 1.00126 1.00459 0.92856 0.90281 0.92950 0.89756 0.93442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 10.56 113.37 1.20 1.48 16 2 O -0.35 -4.77 8.11 -51.39 -0.42 -5.19 16 3 C 0.48 7.95 4.34 71.24 0.31 8.26 16 4 O -0.53 -12.54 13.39 21.94 0.29 -12.25 16 5 C -0.12 -1.27 3.49 -10.55 -0.04 -1.31 16 6 H 0.16 0.55 8.14 -2.39 -0.02 0.53 16 7 C -0.14 -1.71 6.54 31.90 0.21 -1.50 16 8 C 0.04 0.53 7.72 72.67 0.56 1.09 16 9 O -0.39 -7.33 9.97 -148.98 -1.49 -8.81 16 10 C 0.10 1.26 3.08 30.97 0.10 1.36 16 11 H 0.12 0.88 8.12 -2.39 -0.02 0.86 16 12 C -0.11 -1.81 1.51 -10.77 -0.02 -1.82 16 13 C -0.12 -2.06 5.28 30.67 0.16 -1.90 16 14 C 0.10 2.07 6.34 86.36 0.55 2.61 16 15 N -0.61 -19.32 2.97 -818.88 -2.43 -21.76 16 16 C 0.51 21.90 7.70 87.66 0.67 22.58 16 17 O -0.60 -32.28 15.40 -3.05 -0.05 -32.33 16 18 C -0.11 -4.85 3.98 29.85 0.12 -4.73 16 19 C 0.04 2.57 4.26 29.85 0.13 2.70 16 20 C -0.54 -31.72 9.11 25.60 0.23 -31.49 16 21 H 0.08 4.11 7.74 -2.91 -0.02 4.09 16 22 C -0.01 -0.52 5.46 84.65 0.46 -0.06 16 23 N -0.94 -61.25 13.29 21.45 0.28 -60.96 16 24 Si 0.98 44.98 29.54 68.60 2.03 47.00 16 25 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 26 H -0.29 -13.19 7.11 99.48 0.71 -12.48 16 27 H -0.26 -11.32 7.11 99.48 0.71 -10.62 16 28 C 0.11 3.38 6.43 86.36 0.56 3.94 16 29 C -0.14 -3.54 4.62 30.67 0.14 -3.40 16 30 H 0.13 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.80 7.25 -2.39 -0.02 0.78 16 32 H 0.07 0.76 8.13 -2.38 -0.02 0.74 16 33 H 0.07 1.27 6.85 -2.39 -0.02 1.25 16 34 H 0.11 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 36 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 1.72 5.32 -2.39 -0.01 1.70 16 38 H 0.05 1.19 8.07 -2.39 -0.02 1.17 16 39 H 0.11 1.18 8.14 -2.38 -0.02 1.16 16 40 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 41 H 0.10 2.01 5.93 -2.39 -0.01 2.00 16 42 H 0.10 3.87 7.69 -2.38 -0.02 3.85 16 43 H 0.11 3.95 7.94 -2.39 -0.02 3.93 16 44 H -0.02 -1.30 8.10 -2.38 -0.02 -1.32 16 45 H -0.02 -1.53 8.10 -2.39 -0.02 -1.55 16 46 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 47 H 0.08 1.94 7.26 -2.39 -0.02 1.93 16 48 H 0.05 1.95 7.01 -2.39 -0.02 1.93 16 49 H 0.08 2.17 3.87 -2.38 -0.01 2.16 16 50 H 0.05 1.49 7.50 -2.38 -0.02 1.47 16 Total: -1.00 -87.92 384.61 4.50 -83.42 By element: Atomic # 1 Polarization: 12.13 SS G_CDS: 0.94 Total: 13.07 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: 5.34 Total: -2.20 kcal Atomic # 7 Polarization: -80.57 SS G_CDS: -2.15 Total: -82.72 kcal Atomic # 8 Polarization: -56.92 SS G_CDS: -1.66 Total: -58.58 kcal Atomic # 14 Polarization: 44.98 SS G_CDS: 2.03 Total: 47.00 kcal Total: -87.92 4.50 -83.42 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358620459.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.432 kcal (2) G-P(sol) polarization free energy of solvation -87.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.420 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.852 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds