Wall clock time and date at job start Sat Apr 11 2020 05:44:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.34947 * 126.04272 * 2 1 4 4 C 1.35314 * 107.74889 * 180.14723 * 3 2 1 5 5 C 1.50704 * 126.04017 * 179.87133 * 4 3 2 6 6 H 1.08995 * 109.46785 * 24.71490 * 5 4 3 7 7 O 1.42899 * 109.47021 * 144.71582 * 5 4 3 8 8 C 1.52998 * 109.47079 * 264.71267 * 5 4 3 9 9 C 1.52997 * 109.46959 * 178.62898 * 8 5 4 10 10 H 1.09000 * 109.90530 * 53.34162 * 9 8 5 11 11 C 1.53997 * 109.91662 * 174.44314 * 9 8 5 12 12 C 1.54599 * 105.13941 * 120.58230 * 11 9 8 13 13 C 1.54939 * 102.91996 * 21.95786 * 12 11 9 14 14 N 1.47903 * 109.92163 * 292.24062 * 9 8 5 15 15 C 1.46897 * 110.99905 * 94.79923 * 14 9 8 16 16 C 1.53001 * 109.46581 * 175.55166 * 15 14 9 17 17 C 1.53005 * 109.47025 * 180.02562 * 16 15 14 18 18 S 1.80996 * 109.47354 * 179.97438 * 17 16 15 19 19 C 1.76197 * 100.00246 * 180.02562 * 18 17 16 20 20 H 1.07999 * 120.00023 * 359.97438 * 19 18 17 21 21 C 1.38795 * 120.00199 * 180.02562 * 19 18 17 22 22 N 1.31635 * 120.00183 * 179.97438 * 21 19 18 23 23 Si 1.86799 * 120.00224 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47083 * 90.00088 * 23 21 19 25 25 H 1.48494 * 109.47370 * 210.00398 * 23 21 19 26 26 H 1.48499 * 109.46862 * 330.00504 * 23 21 19 27 27 C 1.39868 * 107.91783 * 359.61049 * 4 3 2 28 28 N 1.30835 * 108.20346 * 0.24038 * 27 4 3 29 29 H 1.09004 * 109.46936 * 270.26664 * 1 2 3 30 30 H 1.09005 * 109.46655 * 30.25972 * 1 2 3 31 31 H 1.08990 * 109.47495 * 150.25832 * 1 2 3 32 32 H 1.08007 * 126.12130 * 359.97438 * 3 2 1 33 33 H 0.96697 * 114.00194 * 59.99488 * 7 5 4 34 34 H 1.09007 * 109.47181 * 58.63270 * 8 5 4 35 35 H 1.08994 * 109.47097 * 298.63399 * 8 5 4 36 36 H 1.08998 * 110.30746 * 239.49477 * 11 9 8 37 37 H 1.08994 * 110.30950 * 1.66383 * 11 9 8 38 38 H 1.09000 * 110.72313 * 140.31425 * 12 11 9 39 39 H 1.09001 * 110.72255 * 263.42194 * 12 11 9 40 40 H 1.08996 * 110.67084 * 81.02227 * 13 12 11 41 41 H 1.08999 * 110.66382 * 203.98800 * 13 12 11 42 42 H 1.08993 * 109.47445 * 295.55337 * 15 14 9 43 43 H 1.08998 * 109.46823 * 55.55787 * 15 14 9 44 44 H 1.09001 * 109.47416 * 299.99945 * 16 15 14 45 45 H 1.08999 * 109.47479 * 60.00119 * 16 15 14 46 46 H 1.08993 * 109.47196 * 300.00290 * 17 16 15 47 47 H 1.09005 * 109.46884 * 60.00168 * 17 16 15 48 48 H 0.96998 * 120.00082 * 179.97438 * 22 21 19 49 49 H 1.08002 * 125.89621 * 180.26573 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6664 -0.0033 5 6 4.7681 1.5451 -0.0073 6 1 4.5201 2.5156 0.4225 7 8 5.7985 0.9298 0.7685 8 6 5.2559 1.7336 -1.4451 9 6 6.4785 2.6533 -1.4523 10 1 7.2332 2.2730 -0.7639 11 6 7.0619 2.7393 -2.8749 12 6 6.9975 4.2382 -3.2479 13 6 6.9337 4.9365 -1.8663 14 7 6.0815 4.0225 -1.0583 15 6 6.2881 4.2371 0.3802 16 6 5.9726 5.6930 0.7290 17 6 6.1884 5.9167 2.2271 18 16 5.8159 7.6392 2.6397 19 6 6.1395 7.6159 4.3716 20 1 6.4640 6.7026 4.8481 21 6 5.9763 8.7709 5.1237 22 7 6.2176 8.7534 6.4177 23 14 5.4144 10.3504 4.2999 24 1 3.9314 10.4216 4.3256 25 1 5.9786 11.5158 5.0269 26 1 5.8865 10.3694 2.8920 27 6 3.5346 -0.7322 0.0036 28 7 2.2891 -1.1328 0.0057 29 1 -0.3633 0.0048 1.0277 30 1 -0.3633 0.8877 -0.5179 31 1 -0.3634 -0.8922 -0.5098 32 1 1.9282 2.1193 -0.0004 33 1 6.0699 0.0607 0.4431 34 1 4.4614 2.1806 -2.0427 35 1 5.5268 0.7657 -1.8666 36 1 8.0950 2.3918 -2.8818 37 1 6.4595 2.1510 -3.5670 38 1 7.8932 4.5393 -3.7913 39 1 6.1030 4.4520 -3.8329 40 1 7.9291 5.0168 -1.4294 41 1 6.4728 5.9204 -1.9535 42 1 5.6291 3.5772 0.9443 43 1 7.3253 4.0190 0.6347 44 1 6.6318 6.3528 0.1648 45 1 4.9355 5.9111 0.4744 46 1 5.5296 5.2569 2.7916 47 1 7.2257 5.6988 2.4813 48 1 6.1039 9.5607 6.9432 49 1 4.4053 -1.3712 0.0072 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000375826127.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:55 Heat of formation + Delta-G solvation = -5.426304 kcal Electronic energy + Delta-G solvation = -27184.974372 eV Core-core repulsion = 23466.415249 eV Total energy + Delta-G solvation = -3718.559122 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.20506 -40.40993 -37.93916 -35.57528 -34.68425 -34.05352 -32.90100 -31.67638 -31.16298 -28.41571 -27.98946 -26.93838 -26.36662 -24.18629 -22.79018 -22.04462 -21.35219 -21.16255 -20.87465 -19.56875 -18.33458 -17.35365 -17.10753 -16.84982 -16.66299 -16.29751 -16.14361 -15.83967 -15.74122 -15.36952 -15.00547 -14.92416 -14.63334 -14.28355 -14.02044 -13.75503 -13.61743 -13.53861 -13.42729 -13.35353 -13.07079 -13.05175 -12.81048 -12.50982 -12.33298 -12.19013 -12.10423 -11.97598 -11.92924 -11.69464 -11.55119 -11.33837 -11.17660 -11.13343 -10.85827 -10.56139 -10.38385 -9.36864 -9.24807 -8.98703 -8.51731 -6.23060 0.93314 1.12710 1.32355 1.48151 1.68250 1.74774 1.80111 2.25240 2.68567 2.86131 3.04769 3.55633 3.67434 3.75232 3.86361 3.96929 4.02261 4.10535 4.22027 4.26098 4.31468 4.33844 4.39728 4.41671 4.44813 4.48734 4.51627 4.67696 4.70099 4.72150 4.77366 4.82626 4.87618 4.92769 5.02176 5.09032 5.12220 5.16117 5.20309 5.26325 5.34103 5.45470 5.48965 5.69778 5.69918 6.06194 6.10223 6.10281 6.17985 6.70614 6.92047 6.96821 8.61688 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009773 B = 0.002702 C = 0.002290 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2864.488160 B =10360.525371 C =12223.394758 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.382 5.382 3 C 0.061 3.939 4 C -0.279 4.279 5 C 0.187 3.813 6 H 0.094 0.906 7 O -0.571 6.571 8 C -0.112 4.112 9 C 0.066 3.934 10 H 0.050 0.950 11 C -0.123 4.123 12 C -0.118 4.118 13 C 0.027 3.973 14 N -0.513 5.513 15 C 0.061 3.939 16 C -0.084 4.084 17 C -0.069 4.069 18 S -0.214 6.214 19 C -0.523 4.523 20 H 0.047 0.953 21 C 0.036 3.964 22 N -0.924 5.924 23 Si 0.928 3.072 24 H -0.260 1.260 25 H -0.263 1.263 26 H -0.228 1.228 27 C 0.051 3.949 28 N -0.335 5.335 29 H 0.080 0.920 30 H 0.112 0.888 31 H 0.092 0.908 32 H 0.195 0.805 33 H 0.384 0.616 34 H 0.075 0.925 35 H 0.081 0.919 36 H 0.072 0.928 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.076 0.924 40 H 0.037 0.963 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.027 0.973 44 H 0.068 0.932 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.059 0.941 48 H 0.277 0.723 49 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.942 -17.907 -23.733 30.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.164 5.164 3 C -0.086 4.086 4 C -0.290 4.290 5 C 0.127 3.873 6 H 0.111 0.889 7 O -0.377 6.377 8 C -0.151 4.151 9 C -0.042 4.042 10 H 0.068 0.932 11 C -0.161 4.161 12 C -0.156 4.156 13 C -0.100 4.100 14 N -0.237 5.237 15 C -0.069 4.069 16 C -0.123 4.123 17 C -0.218 4.218 18 S 0.014 5.986 19 C -0.671 4.671 20 H 0.065 0.935 21 C -0.168 4.168 22 N -0.562 5.562 23 Si 0.749 3.251 24 H -0.185 1.185 25 H -0.187 1.187 26 H -0.151 1.151 27 C -0.134 4.134 28 N -0.157 5.157 29 H 0.099 0.901 30 H 0.131 0.869 31 H 0.111 0.889 32 H 0.211 0.789 33 H 0.233 0.767 34 H 0.094 0.906 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.095 0.905 40 H 0.056 0.944 41 H 0.097 0.903 42 H 0.100 0.900 43 H 0.045 0.955 44 H 0.086 0.914 45 H 0.094 0.906 46 H 0.081 0.919 47 H 0.078 0.922 48 H 0.086 0.914 49 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -7.863 -17.343 -23.954 30.600 hybrid contribution 1.662 -0.318 1.562 2.303 sum -6.201 -17.661 -22.392 29.184 Atomic orbital electron populations 1.22170 0.72306 1.05951 1.04365 1.48815 1.07879 1.03382 1.56328 1.22769 0.90871 0.94427 1.00536 1.20967 0.95839 0.94679 1.17552 1.20115 0.82350 0.93532 0.91300 0.88885 1.86617 1.56287 1.37811 1.57016 1.22147 0.97499 0.99185 0.96249 1.22405 0.96239 0.89046 0.96551 0.93151 1.22454 1.01301 0.97129 0.95197 1.22449 1.02778 0.94609 0.95714 1.23332 0.95238 0.97461 0.93996 1.64765 1.51821 1.03723 1.03431 1.22277 0.99406 0.95657 0.89554 1.21236 1.02963 0.96726 0.91360 1.23066 1.02713 0.95698 1.00285 1.83751 1.90229 1.15426 1.09240 1.22352 1.52424 0.99987 0.92308 0.93450 1.25820 0.93737 1.02346 0.94925 1.70048 1.48263 1.30814 1.07097 0.85682 0.79893 0.78318 0.81250 1.18472 1.18738 1.15111 1.24013 0.95580 0.94762 0.99082 1.77267 1.02540 1.09797 1.26077 0.90123 0.86916 0.88893 0.78851 0.76734 0.90649 0.90054 0.90976 0.89813 0.90113 0.90547 0.94437 0.90303 0.90003 0.95522 0.91374 0.90639 0.91916 0.92242 0.91394 0.78139 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.92 11.47 127.77 1.47 2.38 16 2 N -0.38 -7.01 4.01 -369.57 -1.48 -8.49 16 3 C 0.06 1.09 11.40 83.54 0.95 2.04 16 4 C -0.28 -5.22 5.15 -20.14 -0.10 -5.32 16 5 C 0.19 3.44 2.77 29.85 0.08 3.53 16 6 H 0.09 2.11 5.47 -2.39 -0.01 2.10 16 7 O -0.57 -11.17 12.47 -148.98 -1.86 -13.03 16 8 C -0.11 -1.70 4.35 30.59 0.13 -1.56 16 9 C 0.07 1.14 2.53 45.06 0.11 1.26 16 10 H 0.05 1.00 7.08 -2.39 -0.02 0.99 16 11 C -0.12 -1.66 6.57 31.48 0.21 -1.46 16 12 C -0.12 -1.71 7.07 31.80 0.22 -1.49 16 13 C 0.03 0.54 5.35 86.60 0.46 1.01 16 14 N -0.51 -10.91 4.86 -857.35 -4.16 -15.08 16 15 C 0.06 1.58 4.49 86.30 0.39 1.97 16 16 C -0.08 -2.56 5.04 30.60 0.15 -2.41 16 17 C -0.07 -2.73 5.67 71.98 0.41 -2.32 16 18 S -0.21 -10.52 19.41 -56.49 -1.10 -11.62 16 19 C -0.52 -31.59 10.04 67.95 0.68 -30.91 16 20 H 0.05 3.13 8.03 -2.91 -0.02 3.11 16 21 C 0.04 2.16 5.50 84.86 0.47 2.63 16 22 N -0.92 -57.89 13.97 21.65 0.30 -57.59 16 23 Si 0.93 44.61 27.74 68.60 1.90 46.51 16 24 H -0.26 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 26 H -0.23 -10.51 6.74 99.48 0.67 -9.84 16 27 C 0.05 0.95 11.40 85.24 0.97 1.92 16 28 N -0.33 -7.44 12.58 -57.02 -0.72 -8.15 16 29 H 0.08 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.11 0.54 8.14 -2.38 -0.02 0.52 16 31 H 0.09 0.82 8.14 -2.39 -0.02 0.80 16 32 H 0.19 2.52 8.06 -2.91 -0.02 2.49 16 33 H 0.38 4.45 8.24 -74.06 -0.61 3.84 16 34 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 35 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.07 0.89 8.14 -2.39 -0.02 0.88 16 37 H 0.08 0.94 7.69 -2.39 -0.02 0.92 16 38 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 40 H 0.04 0.80 8.02 -2.39 -0.02 0.78 16 41 H 0.08 1.63 7.68 -2.39 -0.02 1.62 16 42 H 0.08 2.22 5.17 -2.39 -0.01 2.21 16 43 H 0.03 0.74 7.97 -2.39 -0.02 0.72 16 44 H 0.07 2.05 6.91 -2.39 -0.02 2.03 16 45 H 0.07 2.30 8.14 -2.39 -0.02 2.28 16 46 H 0.06 2.56 8.14 -2.40 -0.02 2.54 16 47 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 48 H 0.28 15.92 8.31 -92.71 -0.77 15.15 16 49 H 0.20 2.42 7.64 -2.91 -0.02 2.40 16 Total: -1.00 -75.77 400.61 -0.22 -75.99 By element: Atomic # 1 Polarization: 19.92 SS G_CDS: 0.29 Total: 20.21 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 6.61 Total: -28.74 kcal Atomic # 7 Polarization: -83.25 SS G_CDS: -6.06 Total: -89.31 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -1.86 Total: -13.03 kcal Atomic # 14 Polarization: 44.61 SS G_CDS: 1.90 Total: 46.51 kcal Atomic # 16 Polarization: -10.52 SS G_CDS: -1.10 Total: -11.62 kcal Total: -75.77 -0.22 -75.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375826127.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.561 kcal (2) G-P(sol) polarization free energy of solvation -75.771 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.210 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.216 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds