Wall clock time and date at job start Sat Apr 11 2020 05:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34951 * 126.04051 * 2 1 4 4 C 1.35312 * 107.75054 * 180.14895 * 3 2 1 5 5 C 1.50697 * 126.04329 * 179.87197 * 4 3 2 6 6 H 1.09004 * 109.46912 * 24.72283 * 5 4 3 7 7 O 1.42901 * 109.46922 * 144.71534 * 5 4 3 8 8 C 1.53000 * 109.47328 * 264.72015 * 5 4 3 9 9 C 1.53000 * 109.46934 * 177.50773 * 8 5 4 10 10 H 1.09001 * 110.72532 * 51.38125 * 9 8 5 11 11 C 1.54931 * 110.67037 * 288.27803 * 9 8 5 12 12 C 1.54597 * 102.92365 * 204.15329 * 11 9 8 13 13 C 1.53990 * 105.13828 * 21.95809 * 12 11 9 14 14 N 1.47900 * 107.06045 * 1.22494 * 13 12 11 15 15 C 1.46901 * 111.00102 * 214.15822 * 14 13 12 16 16 C 1.53002 * 109.47093 * 67.22031 * 15 14 13 17 17 C 1.53005 * 109.47082 * 184.97124 * 16 15 14 18 18 S 1.80997 * 109.47054 * 179.97438 * 17 16 15 19 19 C 1.76201 * 99.99703 * 179.97438 * 18 17 16 20 20 H 1.08000 * 120.00186 * 0.02562 * 19 18 17 21 21 C 1.38801 * 119.99597 * 180.02562 * 19 18 17 22 22 N 1.31629 * 119.99726 * 180.02562 * 21 19 18 23 23 Si 1.86799 * 120.00295 * 359.97438 * 21 19 18 24 24 H 1.48502 * 109.47227 * 270.00055 * 23 21 19 25 25 H 1.48501 * 109.46913 * 30.00478 * 23 21 19 26 26 H 1.48503 * 109.47190 * 149.99880 * 23 21 19 27 27 C 1.39872 * 107.91461 * 359.61360 * 4 3 2 28 28 N 1.30836 * 108.20691 * 0.23941 * 27 4 3 29 29 H 1.09003 * 109.46911 * 270.25855 * 1 2 3 30 30 H 1.09005 * 109.47071 * 30.25666 * 1 2 3 31 31 H 1.08996 * 109.47128 * 150.25851 * 1 2 3 32 32 H 1.08007 * 126.12484 * 0.02562 * 3 2 1 33 33 H 0.96705 * 113.99633 * 60.00521 * 7 5 4 34 34 H 1.08994 * 109.47219 * 57.50734 * 8 5 4 35 35 H 1.09001 * 109.47125 * 297.50689 * 8 5 4 36 36 H 1.09001 * 110.72455 * 85.79187 * 11 9 8 37 37 H 1.09005 * 110.87321 * 322.58492 * 11 9 8 38 38 H 1.09002 * 110.30587 * 263.03948 * 12 11 9 39 39 H 1.09002 * 110.30584 * 140.87200 * 12 11 9 40 40 H 1.09000 * 109.91768 * 241.87107 * 13 12 11 41 41 H 1.09001 * 110.08205 * 120.67301 * 13 12 11 42 42 H 1.09003 * 109.46983 * 307.22001 * 15 14 13 43 43 H 1.09004 * 109.47279 * 187.22160 * 15 14 13 44 44 H 1.09003 * 109.47341 * 64.97198 * 16 15 14 45 45 H 1.08998 * 109.47102 * 304.97133 * 16 15 14 46 46 H 1.09003 * 109.46972 * 59.99848 * 17 16 15 47 47 H 1.08999 * 109.46781 * 300.00356 * 17 16 15 48 48 H 0.97004 * 120.00249 * 180.02562 * 22 21 19 49 49 H 1.08000 * 125.89286 * 180.25704 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6666 -0.0034 5 6 4.7680 1.5452 -0.0073 6 1 4.5201 2.5157 0.4226 7 8 5.7984 0.9299 0.7684 8 6 5.2558 1.7340 -1.4451 9 6 6.4613 2.6760 -1.4552 10 1 7.2155 2.3450 -0.7413 11 6 6.0216 4.1302 -1.1514 12 6 7.1449 4.9733 -1.7975 13 6 7.7837 4.0511 -2.8523 14 7 7.0388 2.7738 -2.8202 15 6 7.9285 1.6383 -3.0980 16 6 8.9251 1.4781 -1.9481 17 6 9.9292 0.3764 -2.2933 18 16 11.1086 0.1874 -0.9334 19 6 12.1155 -1.1062 -1.5793 20 1 11.8998 -1.5243 -2.5514 21 6 13.1860 -1.5879 -0.8386 22 7 13.9386 -2.5540 -1.3213 23 14 13.5597 -0.8643 0.8425 24 1 14.4978 0.2771 0.6927 25 1 12.2993 -0.3903 1.4686 26 1 14.1789 -1.9045 1.7026 27 6 3.5346 -0.7321 0.0035 28 7 2.2891 -1.1328 0.0055 29 1 -0.3633 0.0046 1.0277 30 1 -0.3633 0.8877 -0.5178 31 1 -0.3633 -0.8923 -0.5098 32 1 1.9282 2.1194 0.0004 33 1 6.0699 0.0608 0.4428 34 1 4.4547 2.1626 -2.0473 35 1 5.5456 0.7686 -1.8602 36 1 5.9790 4.3036 -0.0761 37 1 5.0595 4.3498 -1.6144 38 1 7.8827 5.2585 -1.0476 39 1 6.7262 5.8598 -2.2738 40 1 8.8313 3.8762 -2.6071 41 1 7.7045 4.5024 -3.8413 42 1 8.4706 1.8200 -4.0260 43 1 7.3366 0.7282 -3.1952 44 1 8.3894 1.2092 -1.0377 45 1 9.4555 2.4177 -1.7935 46 1 10.4650 0.6453 -3.2037 47 1 9.3987 -0.5631 -2.4479 48 1 14.6865 -2.8910 -0.8036 49 1 4.4054 -1.3710 0.0069 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000375826131.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:59 Heat of formation + Delta-G solvation = 20.649339 kcal Electronic energy + Delta-G solvation = -27288.436469 eV Core-core repulsion = 23571.008072 eV Total energy + Delta-G solvation = -3717.428398 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.53623 -39.68516 -37.26701 -34.20988 -33.46712 -32.41776 -32.20671 -30.54387 -30.44079 -27.75016 -26.21444 -25.76715 -25.03035 -23.36774 -22.17349 -21.40046 -20.98446 -20.37319 -19.31224 -17.62867 -17.48141 -16.47801 -15.98280 -15.71280 -15.41137 -15.34848 -14.96550 -14.85776 -14.64477 -14.54079 -14.09272 -13.63060 -13.38990 -13.25695 -13.12887 -12.92963 -12.85813 -12.76927 -12.34268 -12.15238 -11.80087 -11.53985 -11.44571 -11.40153 -11.27917 -11.08437 -11.00644 -10.95119 -10.74789 -10.57052 -10.28594 -10.14688 -10.09749 -9.81540 -9.70895 -8.98646 -8.65969 -8.56790 -8.20691 -6.92011 -6.26463 -3.98448 1.58542 2.21725 2.50063 3.04103 3.31659 3.47726 3.61135 3.92718 4.17365 4.33595 4.38595 4.50245 4.55298 4.65052 4.72292 4.76829 4.82483 4.90761 4.97395 4.99547 5.07194 5.11572 5.13420 5.19846 5.30175 5.41228 5.41391 5.44633 5.58107 5.59653 5.63538 5.71755 5.80480 5.81386 5.89203 5.93921 6.05392 6.08086 6.14379 6.19246 6.33189 6.34627 6.46005 6.64330 6.67351 6.96173 7.09657 7.39153 7.60200 7.97359 8.46323 9.19669 10.83055 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010911 B = 0.002732 C = 0.002356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.605872 B =10247.184292 C =11883.034616 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.378 5.378 3 C 0.062 3.938 4 C -0.264 4.264 5 C 0.188 3.812 6 H 0.100 0.900 7 O -0.553 6.553 8 C -0.125 4.125 9 C 0.056 3.944 10 H 0.079 0.921 11 C -0.119 4.119 12 C -0.131 4.131 13 C 0.029 3.971 14 N -0.513 5.513 15 C 0.048 3.952 16 C -0.139 4.139 17 C -0.078 4.078 18 S -0.217 6.217 19 C -0.501 4.501 20 H 0.087 0.913 21 C 0.091 3.909 22 N -0.883 5.883 23 Si 0.861 3.139 24 H -0.269 1.269 25 H -0.237 1.237 26 H -0.276 1.276 27 C 0.060 3.940 28 N -0.296 5.296 29 H 0.074 0.926 30 H 0.087 0.913 31 H 0.088 0.912 32 H 0.173 0.827 33 H 0.376 0.624 34 H 0.074 0.926 35 H 0.068 0.932 36 H 0.070 0.930 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.067 0.933 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.073 0.927 43 H 0.076 0.924 44 H 0.075 0.925 45 H 0.066 0.934 46 H 0.065 0.935 47 H 0.067 0.933 48 H 0.270 0.730 49 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.862 13.033 0.796 29.868 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.161 5.161 3 C -0.084 4.084 4 C -0.276 4.276 5 C 0.127 3.873 6 H 0.118 0.882 7 O -0.358 6.358 8 C -0.164 4.164 9 C -0.052 4.052 10 H 0.097 0.903 11 C -0.157 4.157 12 C -0.169 4.169 13 C -0.099 4.099 14 N -0.236 5.236 15 C -0.082 4.082 16 C -0.179 4.179 17 C -0.227 4.227 18 S 0.010 5.990 19 C -0.649 4.649 20 H 0.105 0.895 21 C -0.117 4.117 22 N -0.519 5.519 23 Si 0.686 3.314 24 H -0.195 1.195 25 H -0.161 1.161 26 H -0.201 1.201 27 C -0.126 4.126 28 N -0.117 5.117 29 H 0.092 0.908 30 H 0.105 0.895 31 H 0.107 0.893 32 H 0.191 0.809 33 H 0.224 0.776 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.088 0.912 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.086 0.914 40 H 0.072 0.928 41 H 0.093 0.907 42 H 0.092 0.908 43 H 0.094 0.906 44 H 0.094 0.906 45 H 0.085 0.915 46 H 0.084 0.916 47 H 0.086 0.914 48 H 0.080 0.920 49 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -28.056 12.987 1.732 30.964 hybrid contribution 1.545 -0.397 -0.325 1.628 sum -26.510 12.590 1.407 29.382 Atomic orbital electron populations 1.21853 0.74272 1.04505 1.03355 1.48508 1.06652 1.03880 1.57013 1.22257 0.90681 0.93422 1.02065 1.20861 0.95404 0.94731 1.16622 1.20040 0.82658 0.93945 0.90700 0.88249 1.86606 1.55750 1.37322 1.56102 1.22130 0.97659 1.00192 0.96390 1.22908 0.96637 0.94999 0.90673 0.90281 1.22536 0.98572 0.94284 1.00320 1.22367 0.98089 0.98359 0.98062 1.22877 0.97084 0.90435 0.99462 1.64941 1.30433 1.01777 1.26400 1.22342 0.93500 0.94212 0.98116 1.22031 0.97037 0.99067 0.99731 1.22971 0.98554 1.00237 1.00912 1.84184 1.35701 1.51404 1.27678 1.22127 1.15131 1.20044 1.07566 0.89462 1.24801 0.94631 0.94042 0.98219 1.69940 1.17602 1.26114 1.38285 0.86675 0.81043 0.79528 0.84135 1.19453 1.16100 1.20140 1.23709 0.95323 0.94440 0.99174 1.77391 1.01697 1.08104 1.24478 0.90776 0.89483 0.89278 0.80947 0.77582 0.90750 0.91351 0.91181 0.91178 0.91519 0.91392 0.92845 0.90737 0.90815 0.90569 0.90649 0.91531 0.91649 0.91420 0.92010 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.47 11.47 59.85 0.69 1.15 16 2 N -0.38 -3.37 4.01 -68.16 -0.27 -3.65 16 3 C 0.06 0.50 11.40 -17.22 -0.20 0.30 16 4 C -0.26 -2.48 5.15 -105.05 -0.54 -3.02 16 5 C 0.19 1.70 3.37 -27.88 -0.09 1.61 16 6 H 0.10 0.84 7.56 -51.93 -0.39 0.45 16 7 O -0.55 -6.09 12.56 -35.23 -0.44 -6.53 16 8 C -0.13 -1.18 4.65 -26.73 -0.12 -1.30 16 9 C 0.06 0.59 1.98 -65.79 -0.13 0.46 16 10 H 0.08 1.00 4.88 -51.93 -0.25 0.74 16 11 C -0.12 -1.08 5.88 -24.87 -0.15 -1.23 16 12 C -0.13 -1.22 6.93 -25.38 -0.18 -1.40 16 13 C 0.03 0.32 6.45 -2.76 -0.02 0.30 16 14 N -0.51 -5.93 5.23 -222.62 -1.16 -7.09 16 15 C 0.05 0.61 5.30 -3.82 -0.02 0.59 16 16 C -0.14 -2.10 4.31 -26.73 -0.12 -2.21 16 17 C -0.08 -1.49 5.67 37.16 0.21 -1.28 16 18 S -0.22 -5.30 19.41 -107.50 -2.09 -7.39 16 19 C -0.50 -14.61 10.04 30.94 0.31 -14.30 16 20 H 0.09 2.71 8.03 -52.49 -0.42 2.29 16 21 C 0.09 2.69 5.50 -17.43 -0.10 2.59 16 22 N -0.88 -26.97 13.97 55.49 0.78 -26.19 16 23 Si 0.86 21.76 27.74 -169.99 -4.72 17.05 16 24 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.24 -5.87 6.74 56.52 0.38 -5.49 16 26 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 27 C 0.06 0.63 11.40 -17.36 -0.20 0.43 16 28 N -0.30 -3.45 12.58 30.63 0.39 -3.06 16 29 H 0.07 0.27 8.14 -51.93 -0.42 -0.16 16 30 H 0.09 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.17 0.79 8.06 -52.48 -0.42 0.37 16 33 H 0.38 3.39 8.24 45.56 0.38 3.77 16 34 H 0.07 0.69 7.99 -51.93 -0.42 0.27 16 35 H 0.07 0.70 7.48 -51.93 -0.39 0.31 16 36 H 0.07 0.60 8.06 -51.93 -0.42 0.18 16 37 H 0.07 0.58 7.95 -51.93 -0.41 0.17 16 38 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.05 0.64 5.94 -51.93 -0.31 0.34 16 41 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.07 0.95 8.11 -51.93 -0.42 0.53 16 43 H 0.08 0.95 7.57 -51.93 -0.39 0.56 16 44 H 0.08 1.15 6.23 -51.93 -0.32 0.83 16 45 H 0.07 1.04 6.25 -51.93 -0.32 0.72 16 46 H 0.06 1.27 8.14 -51.91 -0.42 0.85 16 47 H 0.07 1.29 8.14 -51.92 -0.42 0.87 16 48 H 0.27 7.66 8.31 -40.82 -0.34 7.32 16 49 H 0.18 1.55 7.64 -52.49 -0.40 1.15 16 LS Contribution 399.41 15.07 6.02 6.02 Total: -1.00 -34.76 399.41 -9.61 -44.37 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -7.46 Total: 3.77 kcal Atomic # 6 Polarization: -16.64 SS G_CDS: -0.65 Total: -17.29 kcal Atomic # 7 Polarization: -39.72 SS G_CDS: -0.28 Total: -40.00 kcal Atomic # 8 Polarization: -6.09 SS G_CDS: -0.44 Total: -6.53 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.72 Total: 17.05 kcal Atomic # 16 Polarization: -5.30 SS G_CDS: -2.09 Total: -7.39 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -34.76 -9.61 -44.37 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000375826131.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.021 kcal (2) G-P(sol) polarization free energy of solvation -34.762 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.609 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.371 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds