Wall clock time and date at job start Sat Apr 11 2020 05:45:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81399 * 103.00215 * 2 1 4 4 C 1.53001 * 109.47124 * 180.02562 * 3 2 1 5 5 H 1.09007 * 109.50330 * 304.91929 * 4 3 2 6 6 C 1.53115 * 109.50502 * 64.99375 * 4 3 2 7 7 C 1.53124 * 109.15950 * 177.59452 * 6 4 3 8 8 C 1.53032 * 109.27817 * 302.35012 * 7 6 4 9 9 N 1.46847 * 109.52682 * 59.17958 * 8 7 6 10 10 C 1.46899 * 111.00044 * 174.15899 * 9 8 7 11 11 C 1.50703 * 109.47107 * 66.04660 * 10 9 8 12 12 O 1.21278 * 119.99985 * 359.97438 * 11 10 9 13 13 N 1.34777 * 120.00161 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00271 * 180.02562 * 13 11 10 15 15 C 1.50699 * 109.47398 * 89.99557 * 14 13 11 16 16 H 1.08003 * 120.00015 * 0.02562 * 15 14 13 17 17 C 1.37873 * 120.00048 * 180.02562 * 15 14 13 18 18 N 1.31511 * 120.00473 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 119.99797 * 180.02562 * 17 15 14 20 20 H 1.48495 * 109.47277 * 90.00109 * 19 17 15 21 21 H 1.48505 * 109.47157 * 209.99828 * 19 17 15 22 22 H 1.48499 * 109.47291 * 330.00013 * 19 17 15 23 23 C 1.46505 * 119.99832 * 359.97438 * 13 11 10 24 24 C 1.52994 * 109.47022 * 90.00138 * 23 13 11 25 25 C 1.47206 * 109.47290 * 179.97438 * 24 23 13 26 26 N 9.05880 * 153.57689 * 206.02385 * 4 1 2 27 27 C 1.46842 * 111.19604 * 298.25798 * 9 8 7 28 28 H 1.08993 * 109.47453 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47029 * 300.00826 * 1 2 3 30 30 H 1.09005 * 109.46596 * 59.99996 * 1 2 3 31 31 H 1.09000 * 109.47175 * 59.99460 * 3 2 1 32 32 H 1.09001 * 109.46924 * 299.99218 * 3 2 1 33 33 H 1.09004 * 109.52022 * 57.69390 * 6 4 3 34 34 H 1.08995 * 109.58134 * 297.53171 * 6 4 3 35 35 H 1.08997 * 109.49990 * 182.40712 * 7 6 4 36 36 H 1.08997 * 109.53124 * 62.31009 * 7 6 4 37 37 H 1.09003 * 109.46697 * 299.15746 * 8 7 6 38 38 H 1.09005 * 109.46432 * 179.19590 * 8 7 6 39 39 H 1.09002 * 109.47043 * 186.04640 * 10 9 8 40 40 H 1.09001 * 109.47354 * 306.04701 * 10 9 8 41 41 H 1.09000 * 109.47082 * 209.99555 * 14 13 11 42 42 H 1.09004 * 109.46754 * 329.99821 * 14 13 11 43 43 H 0.96999 * 120.00725 * 179.97438 * 18 17 15 44 44 H 1.08997 * 109.47024 * 210.00620 * 23 13 11 45 45 H 1.09000 * 109.46875 * 330.00379 * 23 13 11 46 46 H 1.09005 * 109.47443 * 299.99879 * 24 23 13 47 47 H 1.09000 * 109.47099 * 60.00377 * 24 23 13 48 48 H 1.09002 * 109.46292 * 181.75922 * 27 9 8 49 49 H 1.09008 * 109.46217 * 301.72586 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7424 1.9399 -0.0006 5 1 4.1707 1.3963 0.8416 6 6 4.3186 1.3914 -1.3089 7 6 5.8322 1.6221 -1.3273 8 6 6.1173 3.1172 -1.1680 9 7 5.5469 3.5935 0.0985 10 6 5.9198 4.9918 0.3510 11 6 5.2793 5.8777 -0.6864 12 8 4.5813 5.3920 -1.5511 13 7 5.4830 7.2096 -0.6537 14 6 4.8599 8.0708 -1.6618 15 6 3.5072 8.5198 -1.1722 16 1 3.1477 8.1963 -0.2065 17 6 2.7286 9.3435 -1.9571 18 7 3.1660 9.7371 -3.1332 19 14 1.0521 9.9006 -1.3499 20 1 1.1962 11.1709 -0.5945 21 1 0.1512 10.1146 -2.5109 22 1 0.4762 8.8591 -0.4617 23 6 6.3266 7.7962 0.3906 24 6 7.7773 7.8442 -0.0929 25 6 8.6249 8.4342 0.9561 26 7 9.2778 8.8898 1.7657 27 6 4.0882 3.4257 0.1202 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5140 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8032 2.2371 0.8899 32 1 1.8033 2.2370 -0.8901 33 1 3.8612 1.9076 -2.1530 34 1 4.1121 0.3235 -1.3797 35 1 6.2421 1.2723 -2.2747 36 1 6.2943 1.0741 -0.5062 37 1 5.6673 3.6632 -1.9972 38 1 7.1946 3.2834 -1.1663 39 1 5.5759 5.2861 1.3426 40 1 7.0036 5.0942 0.2971 41 1 5.4911 8.9423 -1.8353 42 1 4.7435 7.5153 -2.5924 43 1 2.6180 10.3163 -3.6856 44 1 5.9830 8.8070 0.6100 45 1 6.2642 7.1874 1.2926 46 1 8.1209 6.8333 -0.3123 47 1 7.8397 8.4530 -0.9949 48 1 3.6916 3.8159 1.0575 49 1 3.6475 3.9702 -0.7151 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000429294471.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:14 Heat of formation + Delta-G solvation = -30.437224 kcal Electronic energy + Delta-G solvation = -28004.418836 eV Core-core repulsion = 24284.775159 eV Total energy + Delta-G solvation = -3719.643677 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.37994 -39.38315 -37.92865 -36.67302 -35.20947 -34.76157 -32.86736 -32.13096 -29.96340 -29.85101 -28.06465 -27.49784 -25.32669 -24.90482 -23.60877 -22.69361 -20.72596 -19.91113 -18.80338 -18.32557 -17.89639 -17.39268 -17.08303 -16.63428 -16.21930 -16.13321 -15.83032 -15.59586 -15.50720 -15.19967 -15.12367 -14.60025 -14.41039 -14.38143 -14.14733 -14.11147 -13.86857 -13.56926 -13.50868 -13.34772 -13.13831 -13.09509 -12.90605 -12.80630 -12.70159 -12.52587 -12.27699 -12.16832 -11.95997 -11.76293 -11.64402 -11.59781 -11.35271 -11.24079 -11.05512 -10.81038 -10.59970 -9.42233 -9.01304 -8.63836 -8.19181 -6.31474 0.73371 1.37248 1.39114 1.48023 1.66841 1.70571 1.87122 1.90892 2.32065 2.45327 2.97414 3.11362 3.18220 3.73560 3.80783 3.83800 4.01706 4.11819 4.14343 4.26908 4.30596 4.31324 4.35001 4.37556 4.48984 4.54642 4.63831 4.65969 4.70248 4.79140 4.85795 4.87331 4.95692 5.01733 5.07811 5.09419 5.11380 5.18487 5.29201 5.32956 5.34043 5.54844 5.63242 5.89056 6.03558 6.11531 6.12832 6.63291 6.75759 6.84115 7.34338 7.54903 8.87129 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.008050 B = 0.003624 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3477.478501 B = 7723.690972 C =10313.589584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 S -0.288 6.288 3 C -0.072 4.072 4 C -0.054 4.054 5 H 0.087 0.913 6 C -0.111 4.111 7 C -0.107 4.107 8 C 0.040 3.960 9 N -0.505 5.505 10 C 0.037 3.963 11 C 0.470 3.530 12 O -0.576 6.576 13 N -0.597 5.597 14 C 0.261 3.739 15 C -0.537 4.537 16 H 0.052 0.948 17 C 0.012 3.988 18 N -0.926 5.926 19 Si 0.954 3.046 20 H -0.268 1.268 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.113 3.887 24 C -0.037 4.037 25 C 0.246 3.754 26 N -0.490 5.490 27 C 0.045 3.955 28 H 0.114 0.886 29 H 0.083 0.917 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.068 0.932 33 H 0.040 0.960 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.078 0.922 37 H 0.030 0.970 38 H 0.088 0.912 39 H 0.121 0.879 40 H 0.136 0.864 41 H 0.029 0.971 42 H 0.001 0.999 43 H 0.265 0.735 44 H 0.080 0.920 45 H 0.109 0.891 46 H 0.138 0.862 47 H 0.117 0.883 48 H 0.069 0.931 49 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.605 -16.438 7.467 18.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.286 4.286 2 S -0.062 6.062 3 C -0.221 4.221 4 C -0.073 4.073 5 H 0.105 0.895 6 C -0.149 4.149 7 C -0.144 4.144 8 C -0.088 4.088 9 N -0.226 5.226 10 C -0.094 4.094 11 C 0.258 3.742 12 O -0.456 6.456 13 N -0.328 5.328 14 C 0.140 3.860 15 C -0.575 4.575 16 H 0.071 0.929 17 C -0.187 4.187 18 N -0.566 5.566 19 Si 0.780 3.220 20 H -0.193 1.193 21 H -0.211 1.211 22 H -0.199 1.199 23 C -0.012 4.012 24 C -0.078 4.078 25 C -0.071 4.071 26 N -0.168 5.168 27 C -0.084 4.084 28 H 0.133 0.867 29 H 0.102 0.898 30 H 0.096 0.904 31 H 0.105 0.895 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.048 0.952 38 H 0.106 0.894 39 H 0.139 0.861 40 H 0.154 0.846 41 H 0.047 0.953 42 H 0.019 0.981 43 H 0.073 0.927 44 H 0.098 0.902 45 H 0.127 0.873 46 H 0.156 0.844 47 H 0.135 0.865 48 H 0.087 0.913 49 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 5.024 -17.076 8.450 19.704 hybrid contribution -2.680 2.297 -1.266 3.750 sum 2.344 -14.780 7.184 16.599 Atomic orbital electron populations 1.23450 0.92259 1.07432 1.05460 1.86768 1.09621 1.11713 1.98087 1.23380 1.00160 0.93834 1.04697 1.20798 0.91409 0.95678 0.99452 0.89515 1.21605 0.96270 1.00915 0.96096 1.21509 0.95387 0.95029 1.02516 1.22291 0.99843 0.96135 0.90485 1.62470 1.10532 1.16067 1.33562 1.22603 1.03076 0.86036 0.97724 1.22678 0.81334 0.83117 0.87035 1.90592 1.40903 1.74016 1.40137 1.48274 1.47686 1.06724 1.30131 1.18729 0.91817 0.88579 0.86897 1.21735 1.03343 1.29014 1.03454 0.92948 1.25690 1.01649 0.96405 0.94930 1.70019 1.39277 1.35966 1.11352 0.85610 0.79758 0.78786 0.77831 1.19289 1.21141 1.19873 1.21514 0.87508 1.01499 0.90655 1.19823 0.91045 1.03857 0.93058 1.29124 0.92730 0.91964 0.93281 1.81233 1.11897 1.11296 1.12373 1.22325 0.88691 0.95774 1.01634 0.86716 0.89763 0.90380 0.89548 0.91307 0.94115 0.90762 0.90714 0.90384 0.95191 0.89407 0.86106 0.84639 0.95278 0.98053 0.92655 0.90150 0.87315 0.84403 0.86491 0.91301 0.93463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.80 10.76 113.37 1.22 -0.58 16 2 S -0.29 -6.05 21.24 -56.49 -1.20 -7.25 16 3 C -0.07 -1.63 5.39 71.98 0.39 -1.25 16 4 C -0.05 -1.26 2.35 -10.74 -0.03 -1.28 16 5 H 0.09 1.97 8.14 -2.38 -0.02 1.95 16 6 C -0.11 -2.63 5.07 30.67 0.16 -2.47 16 7 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 8 C 0.04 0.97 5.09 86.32 0.44 1.41 16 9 N -0.50 -12.11 4.86 -900.92 -4.38 -16.49 16 10 C 0.04 0.81 4.41 85.56 0.38 1.19 16 11 C 0.47 15.59 7.09 87.66 0.62 16.21 16 12 O -0.58 -24.88 11.20 -3.02 -0.03 -24.92 16 13 N -0.60 -20.17 2.46 -826.17 -2.03 -22.20 16 14 C 0.26 12.27 5.16 85.63 0.44 12.71 16 15 C -0.54 -28.36 9.39 25.60 0.24 -28.12 16 16 H 0.05 2.75 7.81 -2.91 -0.02 2.73 16 17 C 0.01 0.67 5.46 84.65 0.46 1.14 16 18 N -0.93 -53.24 13.29 21.45 0.28 -52.95 16 19 Si 0.95 43.09 29.54 68.60 2.03 45.12 16 20 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 21 H -0.29 -12.83 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 23 C 0.11 2.57 5.17 86.38 0.45 3.02 16 24 C -0.04 -0.62 6.03 28.79 0.17 -0.44 16 25 C 0.25 5.10 15.43 89.45 1.38 6.48 16 26 N -0.49 -13.21 18.53 20.00 0.37 -12.84 16 27 C 0.05 1.24 4.26 86.33 0.37 1.60 16 28 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 29 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 31 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 32 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.04 1.14 8.14 -2.39 -0.02 1.12 16 34 H 0.07 1.67 7.23 -2.39 -0.02 1.65 16 35 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 36 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 37 H 0.03 0.96 6.00 -2.39 -0.01 0.95 16 38 H 0.09 1.73 8.06 -2.38 -0.02 1.71 16 39 H 0.12 2.22 7.40 -2.39 -0.02 2.20 16 40 H 0.14 1.98 7.10 -2.39 -0.02 1.97 16 41 H 0.03 1.38 8.07 -2.39 -0.02 1.36 16 42 H 0.00 0.07 7.42 -2.39 -0.02 0.06 16 43 H 0.26 14.46 8.31 -92.71 -0.77 13.68 16 44 H 0.08 2.08 8.07 -2.39 -0.02 2.06 16 45 H 0.11 1.81 6.44 -2.39 -0.02 1.79 16 46 H 0.14 1.52 7.22 -2.38 -0.02 1.50 16 47 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 48 H 0.07 1.79 8.12 -2.39 -0.02 1.77 16 49 H 0.05 1.71 5.36 -2.38 -0.01 1.69 16 Total: -1.00 -70.91 403.62 2.84 -68.06 By element: Atomic # 1 Polarization: 14.97 SS G_CDS: 0.93 Total: 15.90 kcal Atomic # 6 Polarization: 0.69 SS G_CDS: 6.87 Total: 7.56 kcal Atomic # 7 Polarization: -98.73 SS G_CDS: -5.75 Total: -104.48 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.03 Total: -24.92 kcal Atomic # 14 Polarization: 43.09 SS G_CDS: 2.03 Total: 45.12 kcal Atomic # 16 Polarization: -6.05 SS G_CDS: -1.20 Total: -7.25 kcal Total: -70.91 2.84 -68.06 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429294471.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.627 kcal (2) G-P(sol) polarization free energy of solvation -70.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.281 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds