Wall clock time and date at job start Sat Apr 11 2020 05:45:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 C 1.81401 * 102.99966 * 2 1 4 4 C 1.52995 * 109.47202 * 180.02562 * 3 2 1 5 5 H 1.09001 * 109.50559 * 55.07691 * 4 3 2 6 6 C 1.53125 * 109.50492 * 294.99964 * 4 3 2 7 7 C 1.53114 * 109.16368 * 182.40503 * 6 4 3 8 8 C 1.53037 * 109.31211 * 57.63311 * 7 6 4 9 9 N 1.46854 * 109.52285 * 300.88400 * 8 7 6 10 10 C 1.46895 * 110.99648 * 185.80147 * 9 8 7 11 11 C 1.50706 * 109.47267 * 65.74718 * 10 9 8 12 12 O 1.21276 * 119.99537 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99793 * 179.97438 * 11 10 9 14 14 C 1.46499 * 119.99590 * 179.97438 * 13 11 10 15 15 C 1.50705 * 109.47184 * 90.00250 * 14 13 11 16 16 H 1.07997 * 119.99430 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00016 * 180.02562 * 15 14 13 18 18 N 1.31514 * 120.00055 * 359.97438 * 17 15 14 19 19 Si 1.86801 * 120.00079 * 179.97438 * 17 15 14 20 20 H 1.48506 * 109.46908 * 60.00124 * 19 17 15 21 21 H 1.48505 * 109.47110 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.47392 * 299.99879 * 19 17 15 23 23 C 1.46496 * 120.00205 * 359.97438 * 13 11 10 24 24 C 1.53003 * 109.47066 * 89.99993 * 23 13 11 25 25 C 1.47203 * 109.47284 * 179.97438 * 24 23 13 26 26 N 9.14879 * 150.02619 * 185.02248 * 3 1 2 27 27 C 1.46840 * 111.23238 * 61.67711 * 9 8 7 28 28 H 1.09000 * 109.46910 * 60.00310 * 1 2 3 29 29 H 1.08997 * 109.46851 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47052 * 300.00248 * 1 2 3 31 31 H 1.09002 * 109.47185 * 59.99706 * 3 2 1 32 32 H 1.09003 * 109.46658 * 299.99760 * 3 2 1 33 33 H 1.08998 * 109.52257 * 62.49696 * 6 4 3 34 34 H 1.09004 * 109.56800 * 302.34406 * 6 4 3 35 35 H 1.09002 * 109.50377 * 177.59436 * 7 6 4 36 36 H 1.09003 * 109.50316 * 297.67431 * 7 6 4 37 37 H 1.09000 * 109.46159 * 60.85546 * 8 7 6 38 38 H 1.09000 * 109.46461 * 180.82902 * 8 7 6 39 39 H 1.09006 * 109.47095 * 185.74417 * 10 9 8 40 40 H 1.08994 * 109.47117 * 305.74495 * 10 9 8 41 41 H 1.09005 * 109.46878 * 209.99678 * 14 13 11 42 42 H 1.08997 * 109.47465 * 329.99883 * 14 13 11 43 43 H 0.96999 * 120.00119 * 179.97438 * 18 17 15 44 44 H 1.09000 * 109.47137 * 210.00146 * 23 13 11 45 45 H 1.08999 * 109.46959 * 330.00155 * 23 13 11 46 46 H 1.09000 * 109.47268 * 300.00073 * 24 23 13 47 47 H 1.08999 * 109.47099 * 60.00248 * 24 23 13 48 48 H 1.09001 * 109.46294 * 178.26219 * 27 9 8 49 49 H 1.09003 * 109.45458 * 58.29272 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 6 3.7423 1.9400 -0.0006 5 1 4.1699 1.3967 -0.8433 6 6 4.3196 1.3914 1.3072 7 6 5.8332 1.6221 1.3243 8 6 6.1191 3.1171 1.1647 9 7 5.5466 3.5938 -0.1009 10 6 5.9193 4.9920 -0.3536 11 6 7.4080 5.0841 -0.5689 12 8 8.0913 4.0835 -0.5165 13 7 7.9800 6.2784 -0.8196 14 6 9.4273 6.3680 -1.0284 15 6 9.7351 6.1964 -2.4937 16 1 8.9328 6.0362 -3.1987 17 6 11.0408 6.2429 -2.9338 18 7 12.0177 6.4375 -2.0751 19 14 11.4224 6.0295 -4.7500 20 1 10.7436 7.0975 -5.5272 21 1 12.8895 6.1204 -4.9615 22 1 10.9376 4.7018 -5.2050 23 6 7.1545 7.4870 -0.8835 24 6 7.0585 8.1132 0.5092 25 6 6.2296 9.3279 0.4451 26 7 5.5900 10.2645 0.4002 27 6 4.0880 3.4259 -0.1215 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 1.8031 2.2372 0.8900 32 1 1.8031 2.2371 -0.8900 33 1 4.1132 0.3234 1.3768 34 1 3.8629 1.9065 2.1523 35 1 6.2440 1.2722 2.2714 36 1 6.2942 1.0737 0.5029 37 1 5.6700 3.6633 1.9942 38 1 7.1964 3.2826 1.1617 39 1 5.4007 5.3513 -1.2425 40 1 5.6376 5.6036 0.5035 41 1 9.7829 7.3427 -0.6942 42 1 9.9259 5.5842 -0.4582 43 1 12.9364 6.4698 -2.3847 44 1 7.6073 8.2003 -1.5722 45 1 6.1559 7.2268 -1.2345 46 1 6.6057 7.3998 1.1979 47 1 8.0571 8.3734 0.8602 48 1 3.6906 3.8161 -1.0584 49 1 3.6481 3.9702 0.7142 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000429294472.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:18 Heat of formation + Delta-G solvation = -11.853686 kcal Electronic energy + Delta-G solvation = -27469.023268 eV Core-core repulsion = 23750.185434 eV Total energy + Delta-G solvation = -3718.837834 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.85563 -38.51141 -36.88222 -35.28620 -34.24247 -32.85723 -32.02769 -30.84811 -29.34482 -28.58021 -26.89680 -26.39451 -24.03014 -23.52094 -22.45884 -21.72688 -19.79418 -18.50077 -17.61186 -16.80229 -16.44937 -16.35756 -15.98424 -15.37158 -15.20646 -14.94969 -14.72794 -14.51836 -14.41573 -14.16629 -13.96993 -13.84020 -13.65623 -13.50124 -13.18802 -12.95534 -12.69782 -12.47188 -12.40538 -12.36875 -12.19786 -11.84082 -11.62548 -11.55932 -11.26415 -11.22864 -11.01317 -10.86530 -10.75398 -10.60981 -10.52068 -10.44894 -10.17022 -10.10058 -9.69045 -8.95204 -8.45501 -8.19926 -7.94291 -7.81108 -6.07376 -4.11750 1.35940 2.29815 2.70431 2.78278 3.29750 3.32255 3.36568 3.40967 3.49170 3.90213 4.24739 4.43632 4.48754 4.59012 4.73754 4.76751 4.79729 4.92913 5.02452 5.06681 5.09487 5.14600 5.23742 5.27448 5.28576 5.32559 5.33671 5.37693 5.45912 5.47307 5.54390 5.68233 5.73898 5.80839 5.93526 5.99742 6.05537 6.09899 6.31350 6.42193 6.86201 7.09562 7.15779 7.36925 7.44859 7.54133 7.88940 8.18795 8.27836 8.86632 9.02524 9.53845 11.00694 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010482 B = 0.002708 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2670.510526 B =10337.223694 C =11875.216734 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.256 6.256 3 C -0.079 4.079 4 C -0.068 4.068 5 H 0.091 0.909 6 C -0.115 4.115 7 C -0.114 4.114 8 C 0.050 3.950 9 N -0.518 5.518 10 C 0.035 3.965 11 C 0.508 3.492 12 O -0.512 6.512 13 N -0.600 5.600 14 C 0.247 3.753 15 C -0.527 4.527 16 H 0.057 0.943 17 C 0.063 3.937 18 N -0.895 5.895 19 Si 0.896 3.104 20 H -0.277 1.277 21 H -0.287 1.287 22 H -0.276 1.276 23 C 0.118 3.882 24 C -0.051 4.051 25 C 0.217 3.783 26 N -0.446 5.446 27 C 0.067 3.933 28 H 0.075 0.925 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.072 0.928 34 H 0.057 0.943 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.055 0.945 41 H 0.034 0.966 42 H 0.046 0.954 43 H 0.264 0.736 44 H 0.094 0.906 45 H 0.073 0.927 46 H 0.104 0.896 47 H 0.117 0.883 48 H 0.075 0.925 49 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.329 -6.795 8.080 22.907 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.294 4.294 2 S -0.030 6.030 3 C -0.227 4.227 4 C -0.088 4.088 5 H 0.109 0.891 6 C -0.153 4.153 7 C -0.152 4.152 8 C -0.077 4.077 9 N -0.242 5.242 10 C -0.096 4.096 11 C 0.294 3.706 12 O -0.387 6.387 13 N -0.332 5.332 14 C 0.128 3.872 15 C -0.566 4.566 16 H 0.076 0.924 17 C -0.140 4.140 18 N -0.533 5.533 19 Si 0.724 3.276 20 H -0.203 1.203 21 H -0.212 1.212 22 H -0.201 1.201 23 C -0.008 4.008 24 C -0.092 4.092 25 C -0.101 4.101 26 N -0.123 5.123 27 C -0.062 4.062 28 H 0.094 0.906 29 H 0.118 0.882 30 H 0.093 0.907 31 H 0.098 0.902 32 H 0.100 0.900 33 H 0.090 0.910 34 H 0.076 0.924 35 H 0.084 0.916 36 H 0.093 0.907 37 H 0.041 0.959 38 H 0.118 0.882 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.052 0.948 42 H 0.064 0.936 43 H 0.074 0.926 44 H 0.113 0.887 45 H 0.092 0.908 46 H 0.122 0.878 47 H 0.135 0.865 48 H 0.093 0.907 49 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -19.826 -7.096 7.678 22.414 hybrid contribution -0.776 1.237 -0.417 1.519 sum -20.603 -5.859 7.261 22.617 Atomic orbital electron populations 1.23391 0.94923 1.06390 1.04740 1.87009 1.06493 1.11522 1.97995 1.23460 1.00325 0.94183 1.04765 1.20942 0.90986 0.96536 1.00322 0.89053 1.21699 0.96097 1.01409 0.96104 1.21539 0.95255 0.96159 1.02206 1.22301 1.02224 0.95159 0.88007 1.61449 1.09041 1.18377 1.35322 1.22092 0.95759 0.89851 1.01925 1.20158 0.88913 0.83666 0.77845 1.90664 1.64091 1.34533 1.49396 1.48231 1.10649 1.04772 1.69587 1.19321 0.72631 0.98139 0.97108 1.21377 0.92490 1.49876 0.92879 0.92431 1.24907 0.96103 0.95016 0.97932 1.69906 0.99771 1.49522 1.34146 0.86586 0.77109 0.78832 0.85073 1.20299 1.21247 1.20113 1.21284 0.96443 0.89182 0.93930 1.19915 0.98963 0.88658 1.01686 1.29077 0.93476 0.94436 0.93090 1.81167 1.10762 1.11706 1.08671 1.22068 0.88132 0.95241 1.00809 0.90616 0.88205 0.90672 0.90238 0.89972 0.90974 0.92447 0.91564 0.90691 0.95863 0.88164 0.88372 0.92685 0.94835 0.93601 0.92647 0.88732 0.90819 0.87793 0.86452 0.90669 0.94968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -0.75 10.76 101.05 1.09 0.34 16 2 S -0.26 -2.30 21.24 -107.50 -2.28 -4.58 16 3 C -0.08 -0.63 5.39 37.15 0.20 -0.43 16 4 C -0.07 -0.66 2.35 -90.54 -0.21 -0.88 16 5 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 6 C -0.12 -1.14 5.07 -26.61 -0.13 -1.28 16 7 C -0.11 -1.33 6.09 -26.65 -0.16 -1.49 16 8 C 0.05 0.66 5.11 -3.83 -0.02 0.64 16 9 N -0.52 -6.85 4.40 -236.11 -1.04 -7.89 16 10 C 0.03 0.45 4.00 -4.98 -0.02 0.43 16 11 C 0.51 9.11 7.35 -10.98 -0.08 9.03 16 12 O -0.51 -11.55 13.90 5.56 0.08 -11.47 16 13 N -0.60 -10.66 2.46 -175.06 -0.43 -11.09 16 14 C 0.25 5.75 5.16 -5.19 -0.03 5.72 16 15 C -0.53 -13.99 9.39 -34.44 -0.32 -14.32 16 16 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 17 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 18 N -0.89 -25.46 13.29 55.43 0.74 -24.72 16 19 Si 0.90 21.28 29.54 -169.99 -5.02 16.26 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.29 -6.75 7.11 56.52 0.40 -6.34 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C 0.12 1.52 5.17 -4.04 -0.02 1.50 16 24 C -0.05 -0.51 6.03 -29.52 -0.18 -0.69 16 25 C 0.22 2.54 15.43 -20.79 -0.32 2.22 16 26 N -0.45 -6.40 18.53 42.12 0.78 -5.62 16 27 C 0.07 0.68 4.74 -3.84 -0.02 0.66 16 28 H 0.07 0.40 8.14 -51.92 -0.42 -0.02 16 29 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.39 8.14 -51.92 -0.42 -0.04 16 31 H 0.08 0.57 8.14 -51.92 -0.42 0.14 16 32 H 0.08 0.59 8.14 -51.92 -0.42 0.17 16 33 H 0.07 0.73 7.23 -51.93 -0.38 0.35 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.02 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.10 1.62 5.78 -51.93 -0.30 1.32 16 39 H 0.10 1.12 7.25 -51.93 -0.38 0.75 16 40 H 0.06 0.57 7.17 -51.93 -0.37 0.20 16 41 H 0.03 0.78 8.07 -51.93 -0.42 0.36 16 42 H 0.05 1.22 7.42 -51.93 -0.39 0.84 16 43 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 44 H 0.09 1.31 8.07 -51.93 -0.42 0.89 16 45 H 0.07 0.78 6.44 -51.93 -0.33 0.44 16 46 H 0.10 0.84 7.22 -51.93 -0.37 0.47 16 47 H 0.12 1.18 8.14 -51.93 -0.42 0.75 16 48 H 0.07 0.70 8.02 -51.93 -0.42 0.28 16 49 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 408.64 15.07 6.16 6.16 Total: -1.00 -32.44 408.64 -9.74 -42.18 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -8.39 Total: -2.29 kcal Atomic # 6 Polarization: 3.40 SS G_CDS: -0.33 Total: 3.08 kcal Atomic # 7 Polarization: -49.37 SS G_CDS: 0.05 Total: -49.32 kcal Atomic # 8 Polarization: -11.55 SS G_CDS: 0.08 Total: -11.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Atomic # 16 Polarization: -2.30 SS G_CDS: -2.28 Total: -4.58 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.44 -9.74 -42.18 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000429294472.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.323 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds