Wall clock time and date at job start Sat Apr 11 2020 05:45:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.42894 * 109.47306 * 2 1 4 4 C 1.36094 * 117.00212 * 180.02562 * 3 2 1 5 5 C 1.38983 * 120.08999 * 90.00128 * 4 3 2 6 6 O 1.35995 * 120.04169 * 359.97438 * 5 4 3 7 7 C 1.42906 * 116.99796 * 180.02562 * 6 5 4 8 8 C 1.38661 * 119.91070 * 180.02562 * 5 4 3 9 9 C 1.38230 * 120.08982 * 0.02562 * 8 5 4 10 10 C 1.50703 * 119.90955 * 179.97438 * 9 8 5 11 11 N 1.46505 * 109.47181 * 94.77690 * 10 9 8 12 12 C 1.36942 * 119.99858 * 85.24017 * 11 10 9 13 13 H 1.07996 * 119.99701 * 350.79823 * 12 11 10 14 14 C 1.38808 * 119.99489 * 170.79717 * 12 11 10 15 15 N 1.31617 * 120.00557 * 1.26256 * 14 12 11 16 16 Si 1.86803 * 119.99639 * 181.25582 * 14 12 11 17 17 H 1.48502 * 109.47194 * 90.00239 * 16 14 12 18 18 H 1.48496 * 109.47054 * 210.00101 * 16 14 12 19 19 H 1.48492 * 109.47247 * 330.00232 * 16 14 12 20 20 C 1.46493 * 119.99814 * 265.24059 * 11 10 9 21 21 C 1.53006 * 109.47213 * 263.05834 * 20 11 10 22 22 O 1.42896 * 109.46886 * 62.92501 * 21 20 11 23 23 C 1.42901 * 114.00147 * 184.95987 * 22 21 20 24 24 C 1.38230 * 120.18117 * 0.24670 * 9 8 5 25 25 C 1.38677 * 120.08425 * 359.46295 * 24 9 8 26 26 O 1.35993 * 120.04078 * 180.27305 * 25 24 9 27 27 C 1.42900 * 117.00210 * 4.96042 * 26 25 24 28 28 H 1.09000 * 109.46956 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.46811 * 300.00274 * 1 2 3 30 30 H 1.09005 * 109.46750 * 59.99670 * 1 2 3 31 31 H 1.08997 * 109.47056 * 240.00209 * 2 1 3 32 32 H 1.09000 * 109.47130 * 120.00097 * 2 1 3 33 33 H 1.08998 * 109.46570 * 60.00123 * 7 6 5 34 34 H 1.09001 * 109.46849 * 180.02562 * 7 6 5 35 35 H 1.09000 * 109.47095 * 300.00224 * 7 6 5 36 36 H 1.08001 * 119.95649 * 180.02562 * 8 5 4 37 37 H 1.08990 * 109.46986 * 334.77516 * 10 9 8 38 38 H 1.09004 * 109.46878 * 214.77514 * 10 9 8 39 39 H 0.97001 * 120.00469 * 179.97438 * 15 14 12 40 40 H 1.08999 * 109.47535 * 23.06373 * 20 11 10 41 41 H 1.09007 * 109.47281 * 143.06279 * 20 11 10 42 42 H 1.08997 * 109.47100 * 182.92005 * 21 20 11 43 43 H 1.09002 * 109.46758 * 302.92152 * 21 20 11 44 44 H 1.08995 * 109.47598 * 184.95596 * 23 22 21 45 45 H 1.08997 * 109.46709 * 304.96109 * 23 22 21 46 46 H 1.09001 * 109.47116 * 64.95033 * 23 22 21 47 47 H 1.07994 * 119.95786 * 179.72877 * 24 9 8 48 48 H 1.09009 * 109.46876 * 184.21124 * 27 26 25 49 49 H 1.08997 * 109.47592 * 304.20833 * 27 26 25 50 50 H 1.08999 * 109.46880 * 64.21814 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3556 1.5255 -0.0005 5 6 4.0459 1.6170 -1.2034 6 8 3.3741 1.5280 -2.3824 7 6 4.1480 1.6300 -3.5794 8 6 5.4206 1.7982 -1.1996 9 6 6.1046 1.8872 -0.0017 10 6 7.5988 2.0835 -0.0023 11 7 7.9038 3.5118 0.1135 12 6 7.9634 4.1013 1.3481 13 1 7.6424 3.5557 2.2230 14 6 8.4366 5.4001 1.4747 15 7 8.8046 6.0738 0.4056 16 14 8.5510 6.1919 3.1628 17 1 9.8857 5.9128 3.7511 18 1 8.3636 7.6594 3.0349 19 1 7.4949 5.6329 4.0444 20 6 8.1448 4.3093 -1.0915 21 6 9.6511 4.4238 -1.3344 22 8 10.1948 3.1245 -1.5757 23 6 11.6178 3.1046 -1.7047 24 6 5.4226 1.7911 1.1968 25 6 4.0469 1.6159 1.2017 26 8 3.3761 1.5270 2.3813 27 6 4.1339 1.7309 3.5756 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8934 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 4.8880 0.8300 -3.6028 34 1 3.4913 1.5435 -4.4451 35 1 4.6549 2.5947 -3.6032 36 1 5.9577 1.8698 -2.1338 37 1 8.0156 1.6972 -0.9323 38 1 8.0358 1.5492 0.8413 39 1 9.1349 6.9815 0.4941 40 1 7.6744 3.8255 -1.9476 41 1 7.7215 5.3050 -0.9590 42 1 9.8321 5.0599 -2.2008 43 1 10.1284 4.8603 -0.4571 44 1 11.9444 2.0999 -1.9730 45 1 11.9219 3.8054 -2.4822 46 1 12.0726 3.3936 -0.7572 47 1 5.9612 1.8568 2.1306 48 1 3.4972 1.5591 4.4436 49 1 4.9727 1.0353 3.5969 50 1 4.5095 2.7539 3.5973 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453601145.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:20 Heat of formation + Delta-G solvation = -92.133956 kcal Electronic energy + Delta-G solvation = -31352.413853 eV Core-core repulsion = 27155.049183 eV Total energy + Delta-G solvation = -4197.364670 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.42464 -38.69055 -37.65598 -37.26018 -36.39379 -34.91087 -32.10094 -31.12293 -29.62971 -29.26032 -28.43631 -27.56927 -26.79982 -25.53319 -25.11761 -23.11511 -22.56801 -21.64162 -21.20736 -20.20950 -18.17630 -17.11774 -16.94537 -16.65711 -16.11716 -15.83347 -15.41654 -15.27732 -14.96890 -14.88841 -14.57742 -14.53102 -14.37764 -14.09065 -13.71993 -13.52314 -13.37397 -13.03046 -12.62037 -12.43334 -12.11295 -12.04625 -11.66118 -11.55927 -11.48196 -11.31857 -11.28339 -11.14214 -11.00202 -10.87690 -10.81637 -10.62260 -10.38891 -10.20666 -9.95811 -9.84024 -9.68232 -9.55102 -8.90001 -8.25537 -7.77240 -7.74702 -6.86514 -5.70512 -3.19440 1.62890 1.80406 3.10455 3.33570 3.39444 3.41095 3.78093 3.90751 4.22049 4.46203 4.93107 5.13782 5.15131 5.22493 5.29700 5.31533 5.33529 5.39111 5.41899 5.46366 5.50123 5.53689 5.56692 5.62119 5.64949 5.70520 5.82947 5.91236 5.98942 6.01590 6.03362 6.14596 6.18040 6.28716 6.56495 6.58941 6.62017 6.65829 6.75580 6.83186 7.09709 7.17942 7.38547 7.50970 7.56068 7.74965 7.78499 8.06433 8.27782 8.42096 9.21322 9.79316 10.23318 11.22863 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011114 B = 0.003993 C = 0.003221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.669259 B = 7010.444552 C = 8691.284153 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.060 3.940 3 O -0.311 6.311 4 C 0.011 3.989 5 C 0.142 3.858 6 O -0.310 6.310 7 C 0.027 3.973 8 C -0.224 4.224 9 C -0.005 4.005 10 C 0.185 3.815 11 N -0.584 5.584 12 C -0.223 4.223 13 H 0.073 0.927 14 C -0.014 4.014 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.290 1.290 18 H -0.291 1.291 19 H -0.282 1.282 20 C 0.182 3.818 21 C 0.058 3.942 22 O -0.404 6.404 23 C 0.041 3.959 24 C -0.212 4.212 25 C 0.143 3.857 26 O -0.310 6.310 27 C 0.026 3.974 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.047 0.953 33 H 0.054 0.946 34 H 0.096 0.904 35 H 0.058 0.942 36 H 0.129 0.871 37 H 0.061 0.939 38 H 0.053 0.947 39 H 0.250 0.750 40 H 0.005 0.995 41 H 0.114 0.886 42 H 0.009 0.991 43 H 0.092 0.908 44 H 0.065 0.935 45 H 0.024 0.976 46 H 0.030 0.970 47 H 0.132 0.868 48 H 0.095 0.905 49 H 0.055 0.945 50 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.043 -10.746 -2.973 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.015 4.015 3 O -0.228 6.228 4 C -0.034 4.034 5 C 0.096 3.904 6 O -0.223 6.223 7 C -0.068 4.068 8 C -0.243 4.243 9 C -0.009 4.009 10 C 0.057 3.943 11 N -0.303 5.303 12 C -0.352 4.352 13 H 0.091 0.909 14 C -0.208 4.208 15 N -0.570 5.570 16 Si 0.743 3.257 17 H -0.217 1.217 18 H -0.217 1.217 19 H -0.208 1.208 20 C 0.057 3.943 21 C -0.019 4.019 22 O -0.324 6.324 23 C -0.057 4.057 24 C -0.231 4.231 25 C 0.097 3.903 26 O -0.223 6.223 27 C -0.069 4.069 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.073 0.927 34 H 0.114 0.886 35 H 0.077 0.923 36 H 0.146 0.854 37 H 0.080 0.920 38 H 0.071 0.929 39 H 0.062 0.938 40 H 0.024 0.976 41 H 0.132 0.868 42 H 0.027 0.973 43 H 0.109 0.891 44 H 0.084 0.916 45 H 0.042 0.958 46 H 0.048 0.952 47 H 0.149 0.851 48 H 0.113 0.887 49 H 0.074 0.926 50 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.637 -10.641 -2.960 13.428 hybrid contribution 1.046 0.779 0.845 1.554 sum -6.591 -9.861 -2.115 12.049 Atomic orbital electron populations 1.21705 0.93837 1.01803 1.03044 1.22628 0.95035 0.83892 0.99932 1.86165 1.16879 1.25804 1.93969 1.16782 0.83464 1.15487 0.87669 1.18938 0.90362 0.96354 0.84780 1.86080 1.36196 1.87763 1.12236 1.23053 0.96928 1.01752 0.85072 1.20953 0.91839 1.12041 0.99516 1.20890 1.00012 0.89129 0.90899 1.19806 0.86832 0.86987 1.00653 1.44022 1.79919 1.02798 1.03530 1.19387 1.33982 0.96633 0.85224 0.90875 1.24756 1.01159 0.97481 0.97420 1.70076 1.49946 1.11213 1.25781 0.86108 0.77686 0.78620 0.83304 1.21723 1.21717 1.20812 1.21129 0.91060 0.97560 0.84593 1.24106 0.98276 0.80681 0.98859 1.87817 1.18189 1.33261 1.93091 1.22451 0.84302 1.00136 0.98799 1.20979 0.91666 1.10699 0.99800 1.18981 0.90395 0.96126 0.84824 1.86062 1.37535 1.86316 1.12395 1.23077 0.97012 1.01849 0.84953 0.91337 0.91888 0.91909 0.93552 0.93513 0.92706 0.88610 0.92328 0.85351 0.92026 0.92865 0.93832 0.97637 0.86812 0.97289 0.89061 0.91639 0.95751 0.95157 0.85065 0.88663 0.92597 0.92097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.62 10.28 37.16 0.38 -1.24 16 2 C 0.06 0.85 6.78 37.16 0.25 1.10 16 3 O -0.31 -5.61 9.62 -45.30 -0.44 -6.05 16 4 C 0.01 0.21 5.75 -39.03 -0.22 -0.01 16 5 C 0.14 2.54 6.70 -39.15 -0.26 2.28 16 6 O -0.31 -5.03 10.28 -34.31 -0.35 -5.38 16 7 C 0.03 0.32 9.81 101.05 0.99 1.31 16 8 C -0.22 -3.99 8.67 -39.43 -0.34 -4.34 16 9 C -0.01 -0.10 5.43 -104.63 -0.57 -0.67 16 10 C 0.18 3.75 5.71 -5.19 -0.03 3.72 16 11 N -0.58 -13.82 2.45 -174.61 -0.43 -14.25 16 12 C -0.22 -5.69 9.77 -15.06 -0.15 -5.83 16 13 H 0.07 1.81 7.80 -52.49 -0.41 1.40 16 14 C -0.01 -0.37 5.23 -17.43 -0.09 -0.46 16 15 N -0.92 -24.30 7.20 55.49 0.40 -23.90 16 16 Si 0.91 21.05 29.55 -169.99 -5.02 16.03 16 17 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 19 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 20 C 0.18 4.29 5.36 -4.04 -0.02 4.27 16 21 C 0.06 1.33 5.44 37.16 0.20 1.53 16 22 O -0.40 -8.66 10.41 -35.23 -0.37 -9.03 16 23 C 0.04 0.70 11.01 101.05 1.11 1.81 16 24 C -0.21 -3.92 8.74 -39.42 -0.34 -4.27 16 25 C 0.14 2.63 6.69 -39.15 -0.26 2.36 16 26 O -0.31 -5.25 10.28 -34.30 -0.35 -5.60 16 27 C 0.03 0.34 9.87 101.05 1.00 1.34 16 28 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.59 7.66 -51.93 -0.40 0.19 16 34 H 0.10 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.06 0.71 7.66 -51.93 -0.40 0.31 16 36 H 0.13 2.10 6.29 -52.49 -0.33 1.77 16 37 H 0.06 1.22 7.79 -51.93 -0.40 0.81 16 38 H 0.05 1.06 8.05 -51.93 -0.42 0.64 16 39 H 0.25 6.54 8.31 -40.82 -0.34 6.20 16 40 H 0.01 0.12 8.02 -51.93 -0.42 -0.30 16 41 H 0.11 2.99 5.93 -51.93 -0.31 2.68 16 42 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 43 H 0.09 2.36 5.90 -51.93 -0.31 2.05 16 44 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 45 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.13 2.33 6.24 -52.49 -0.33 2.00 16 48 H 0.09 0.97 8.14 -51.92 -0.42 0.55 16 49 H 0.06 0.67 7.18 -51.93 -0.37 0.30 16 50 H 0.06 0.85 8.08 -51.93 -0.42 0.43 16 LS Contribution 406.83 15.07 6.13 6.13 Total: -1.00 -29.85 406.83 -7.08 -36.93 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -8.29 Total: 2.21 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: 1.65 Total: 2.90 kcal Atomic # 7 Polarization: -38.12 SS G_CDS: -0.03 Total: -38.15 kcal Atomic # 8 Polarization: -24.54 SS G_CDS: -1.51 Total: -26.05 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.03 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -29.85 -7.08 -36.93 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453601145.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.202 kcal (2) G-P(sol) polarization free energy of solvation -29.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.078 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.134 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds