Wall clock time and date at job start Sat Apr 11 2020 05:45:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34638 * 116.99776 * 2 1 4 4 O 1.21513 * 119.99956 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99672 * 180.27362 * 3 2 1 6 6 C 1.46927 * 120.63303 * 359.73157 * 5 3 2 7 7 C 1.53191 * 108.77041 * 233.58299 * 6 5 3 8 8 C 1.53040 * 109.31454 * 305.36017 * 7 6 5 9 9 C 1.53039 * 109.53579 * 61.36967 * 8 7 6 10 10 H 1.08997 * 109.49788 * 58.58384 * 9 8 7 11 11 C 1.50696 * 109.49731 * 178.64927 * 9 8 7 12 12 O 1.20827 * 120.00585 * 0.02562 * 11 9 8 13 13 O 1.34233 * 119.99996 * 179.97438 * 11 9 8 14 14 C 1.45206 * 116.99924 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.46933 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.41324 * 55.14698 * 15 14 13 17 17 C 1.52956 * 109.41418 * 174.99920 * 15 14 13 18 18 C 1.53229 * 109.40637 * 183.70413 * 17 15 14 19 19 C 1.51269 * 108.53562 * 305.37405 * 18 17 15 20 20 C 1.37881 * 120.85017 * 231.36465 * 19 18 17 21 21 N 1.31517 * 119.99855 * 0.02562 * 20 19 18 22 22 Si 1.86795 * 120.00049 * 180.02562 * 20 19 18 23 23 H 1.48502 * 109.47001 * 90.00248 * 22 20 19 24 24 H 1.48500 * 109.47293 * 210.00028 * 22 20 19 25 25 H 1.48495 * 109.47374 * 330.00546 * 22 20 19 26 26 C 1.51263 * 118.29886 * 51.35103 * 19 18 17 27 27 C 1.52959 * 109.41752 * 295.35444 * 15 14 13 28 28 C 1.46933 * 120.62803 * 179.44517 * 5 3 2 29 29 H 1.08992 * 109.47099 * 299.99376 * 1 2 3 30 30 H 1.09004 * 109.47111 * 60.00187 * 1 2 3 31 31 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58548 * 353.37064 * 6 5 3 33 33 H 1.09001 * 109.58489 * 113.65465 * 6 5 3 34 34 H 1.09001 * 109.50111 * 65.31901 * 7 6 5 35 35 H 1.09007 * 109.49301 * 185.41249 * 7 6 5 36 36 H 1.09002 * 109.46093 * 181.39062 * 8 7 6 37 37 H 1.09003 * 109.46241 * 301.36285 * 8 7 6 38 38 H 1.09004 * 109.47172 * 300.00370 * 14 13 11 39 39 H 1.09000 * 109.46839 * 60.00909 * 14 13 11 40 40 H 1.08997 * 109.48612 * 303.68841 * 17 15 14 41 41 H 1.09010 * 109.47903 * 63.72615 * 17 15 14 42 42 H 1.08993 * 109.62728 * 65.09334 * 18 17 15 43 43 H 1.09006 * 109.62507 * 185.46707 * 18 17 15 44 44 H 0.97002 * 119.99651 * 179.97438 * 21 20 19 45 45 H 1.08999 * 109.63085 * 68.36612 * 26 19 18 46 46 H 1.09000 * 109.62479 * 188.74227 * 26 19 18 47 47 H 1.09003 * 109.48157 * 296.27877 * 27 15 14 48 48 H 1.09003 * 109.47784 * 56.31599 * 27 15 14 49 49 H 1.08997 * 109.58923 * 246.20492 * 28 5 3 50 50 H 1.09000 * 109.58540 * 6.63008 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0056 6 6 4.2229 0.0469 -0.0058 7 6 5.2175 0.1163 1.1573 8 6 6.0280 1.4103 1.0536 9 6 5.0866 2.6130 1.1508 10 1 4.5445 2.5751 2.0957 11 6 5.8890 3.8866 1.0820 12 8 7.0908 3.8382 0.9665 13 8 5.2686 5.0752 1.1480 14 6 6.1047 6.2601 1.0760 15 6 5.2270 7.5099 1.1673 16 1 4.6210 7.4617 2.0721 17 6 6.1163 8.7533 1.2170 18 6 5.2417 9.9979 1.4015 19 6 4.1997 10.0202 0.3051 20 6 4.0142 11.1444 -0.4712 21 7 4.7485 12.2156 -0.2634 22 14 2.7201 11.1461 -1.8183 23 1 1.4274 11.6205 -1.2622 24 1 3.1487 12.0506 -2.9153 25 1 2.5553 9.7688 -2.3481 26 6 3.3667 8.7774 0.0822 27 6 4.3093 7.5772 -0.0546 28 6 4.0905 2.5719 -0.0179 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5765 -0.8220 0.1176 33 1 4.7646 -0.0315 -0.9484 34 1 4.6742 0.1019 2.1021 35 1 5.8911 -0.7396 1.1114 36 1 6.7536 1.4504 1.8661 37 1 6.5515 1.4354 0.0978 38 1 6.8152 6.2543 1.9027 39 1 6.6472 6.2651 0.1306 40 1 6.8112 8.6702 2.0526 41 1 6.6762 8.8373 0.2854 42 1 4.7499 9.9589 2.3734 43 1 5.8609 10.8929 1.3403 44 1 4.6182 13.0064 -0.8098 45 1 2.7011 8.6254 0.9319 46 1 2.7780 8.8898 -0.8283 47 1 4.9118 7.6890 -0.9560 48 1 3.7234 6.6604 -0.1200 49 1 4.6235 2.6965 -0.9605 50 1 3.3566 3.3696 0.0974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000496514396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:24 Heat of formation + Delta-G solvation = -188.782806 kcal Electronic energy + Delta-G solvation = -30411.571457 eV Core-core repulsion = 26210.015778 eV Total energy + Delta-G solvation = -4201.555679 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.14329 -40.41660 -38.48077 -37.33141 -36.49578 -35.95882 -33.44396 -32.61142 -31.87616 -29.81400 -29.14225 -28.13593 -25.86768 -25.40935 -24.37668 -22.39703 -21.58796 -21.09368 -20.77371 -20.03080 -19.13569 -18.53357 -17.44440 -17.37017 -16.85126 -16.50721 -16.17646 -15.96874 -15.14453 -14.96516 -14.50427 -14.41959 -14.39552 -13.90736 -13.77656 -13.52524 -13.13120 -13.12724 -12.96548 -12.71237 -12.52521 -12.37407 -12.03750 -11.87159 -11.73675 -11.48483 -11.42757 -11.16068 -11.06990 -11.04087 -10.85750 -10.77927 -10.74506 -10.67576 -10.29080 -10.22529 -9.96699 -9.79301 -9.36733 -9.19015 -8.80406 -8.55080 -8.40528 -6.05593 -3.95696 1.70797 2.19966 2.51834 2.73394 3.31251 3.39288 3.41078 3.52065 4.21887 4.34061 4.41021 4.42865 4.50477 4.74992 4.83279 4.90350 4.92583 4.98938 5.11209 5.17083 5.21736 5.31654 5.35803 5.37336 5.41043 5.42459 5.49973 5.69190 5.70100 5.87637 5.91073 5.98846 6.02500 6.09166 6.35152 6.55105 6.63801 6.74201 6.82325 6.93838 6.98186 7.07523 7.16964 7.23685 7.49282 7.70775 7.76312 7.80523 7.87838 7.95331 8.44484 9.01832 9.59667 11.04125 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.002734 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.011808 B =10237.238092 C =12005.255846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.055 3.945 2 O -0.372 6.372 3 C 0.649 3.351 4 O -0.562 6.562 5 N -0.594 5.594 6 C 0.108 3.892 7 C -0.134 4.134 8 C -0.106 4.106 9 C -0.096 4.096 10 H 0.113 0.887 11 C 0.465 3.535 12 O -0.508 6.508 13 O -0.347 6.347 14 C 0.072 3.928 15 C -0.072 4.072 16 H 0.070 0.930 17 C -0.101 4.101 18 C 0.011 3.989 19 C -0.485 4.485 20 C 0.074 3.926 21 N -0.893 5.893 22 Si 0.886 3.114 23 H -0.279 1.279 24 H -0.291 1.291 25 H -0.264 1.264 26 C -0.022 4.022 27 C -0.100 4.100 28 C 0.137 3.863 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.102 0.898 32 H 0.095 0.905 33 H 0.074 0.926 34 H 0.071 0.929 35 H 0.085 0.915 36 H 0.079 0.921 37 H 0.077 0.923 38 H 0.064 0.936 39 H 0.068 0.932 40 H 0.032 0.968 41 H 0.052 0.948 42 H 0.004 0.996 43 H 0.058 0.942 44 H 0.263 0.737 45 H 0.017 0.983 46 H 0.033 0.967 47 H 0.049 0.951 48 H 0.039 0.961 49 H 0.081 0.919 50 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.581 -28.210 1.665 28.303 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 O -0.286 6.286 3 C 0.403 3.597 4 O -0.450 6.450 5 N -0.335 5.335 6 C -0.014 4.014 7 C -0.172 4.172 8 C -0.144 4.144 9 C -0.116 4.116 10 H 0.131 0.869 11 C 0.307 3.693 12 O -0.396 6.396 13 O -0.263 6.263 14 C -0.001 4.001 15 C -0.091 4.091 16 H 0.088 0.912 17 C -0.139 4.139 18 C -0.026 4.026 19 C -0.504 4.504 20 C -0.128 4.128 21 N -0.531 5.531 22 Si 0.714 3.286 23 H -0.205 1.205 24 H -0.217 1.217 25 H -0.189 1.189 26 C -0.059 4.059 27 C -0.138 4.138 28 C 0.016 3.984 29 H 0.083 0.917 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.113 0.887 33 H 0.092 0.908 34 H 0.090 0.910 35 H 0.104 0.896 36 H 0.098 0.902 37 H 0.096 0.904 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.050 0.950 41 H 0.071 0.929 42 H 0.022 0.978 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.035 0.965 46 H 0.051 0.949 47 H 0.067 0.933 48 H 0.058 0.942 49 H 0.099 0.901 50 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.478 -27.695 1.557 27.778 hybrid contribution -0.554 0.187 -0.716 0.924 sum -2.032 -27.508 0.841 27.595 Atomic orbital electron populations 1.23220 0.74250 1.03436 1.03001 1.86208 1.24260 1.30952 1.87137 1.18004 0.83002 0.82273 0.76419 1.91060 1.63979 1.34786 1.55130 1.46820 1.02062 1.08230 1.76386 1.21823 0.93908 0.86499 0.99174 1.21956 0.98115 0.98146 0.98987 1.21462 0.96958 0.91564 1.04393 1.21519 0.97124 0.90508 1.02478 0.86861 1.23268 0.87259 0.85853 0.72893 1.90658 1.15853 1.88077 1.45057 1.86539 1.42573 1.14863 1.82317 1.23533 0.93175 0.81613 1.01826 1.21128 0.96827 0.90751 1.00393 0.91158 1.21631 0.97211 0.95694 0.99378 1.19359 0.94780 0.93510 0.94959 1.20077 1.17873 0.96107 1.16356 1.24854 0.95804 0.95130 0.97032 1.69844 1.39559 1.03438 1.40260 0.86690 0.82037 0.77806 0.82018 1.20452 1.21740 1.18888 1.19820 0.95043 0.93928 0.97121 1.21559 0.97854 0.98332 0.96085 1.21636 0.95172 0.84575 0.97057 0.91701 0.91727 0.87967 0.88675 0.90758 0.91016 0.89614 0.90222 0.90424 0.91787 0.91406 0.94965 0.92905 0.97770 0.92379 0.92692 0.96502 0.94855 0.93268 0.94226 0.90071 0.86700 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 10.56 101.05 1.07 1.45 16 2 O -0.37 -3.50 9.21 -40.32 -0.37 -3.87 16 3 C 0.65 7.67 8.43 54.06 0.46 8.12 16 4 O -0.56 -8.68 15.54 -19.28 -0.30 -8.97 16 5 N -0.59 -5.76 2.97 -178.29 -0.53 -6.29 16 6 C 0.11 0.69 6.44 -3.71 -0.02 0.67 16 7 C -0.13 -0.75 6.08 -26.61 -0.16 -0.91 16 8 C -0.11 -0.84 4.46 -26.69 -0.12 -0.96 16 9 C -0.10 -0.97 2.79 -91.43 -0.26 -1.22 16 10 H 0.11 1.07 8.14 -51.93 -0.42 0.65 16 11 C 0.47 6.36 7.26 36.00 0.26 6.63 16 12 O -0.51 -8.02 15.73 -18.75 -0.29 -8.31 16 13 O -0.35 -5.43 9.61 -39.27 -0.38 -5.81 16 14 C 0.07 1.20 4.84 37.16 0.18 1.38 16 15 C -0.07 -1.40 2.33 -90.67 -0.21 -1.61 16 16 H 0.07 1.38 8.14 -51.93 -0.42 0.95 16 17 C -0.10 -2.13 5.21 -26.64 -0.14 -2.26 16 18 C 0.01 0.28 5.96 -27.49 -0.16 0.12 16 19 C -0.49 -12.94 5.51 -98.92 -0.55 -13.48 16 20 C 0.07 2.05 5.46 -17.82 -0.10 1.95 16 21 N -0.89 -26.00 12.73 55.43 0.71 -25.30 16 22 Si 0.89 21.47 27.53 -169.99 -4.68 16.80 16 23 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 24 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 25 H -0.26 -6.20 6.11 56.52 0.35 -5.86 16 26 C -0.02 -0.52 5.59 -27.49 -0.15 -0.67 16 27 C -0.10 -2.09 5.15 -26.64 -0.14 -2.23 16 28 C 0.14 1.45 5.68 -3.48 -0.02 1.43 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.37 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.53 6.93 -51.93 -0.36 0.17 16 33 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.09 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.66 8.07 -51.93 -0.42 0.24 16 37 H 0.08 0.64 8.13 -51.93 -0.42 0.22 16 38 H 0.06 1.02 8.13 -51.93 -0.42 0.60 16 39 H 0.07 1.13 8.13 -51.93 -0.42 0.71 16 40 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.05 1.14 8.14 -51.92 -0.42 0.72 16 42 H 0.00 0.10 8.14 -51.93 -0.42 -0.32 16 43 H 0.06 1.59 7.08 -51.93 -0.37 1.22 16 44 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 45 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 46 H 0.03 0.80 4.59 -51.93 -0.24 0.56 16 47 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 48 H 0.04 0.76 7.71 -51.93 -0.40 0.36 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.11 1.47 7.00 -51.93 -0.36 1.11 16 LS Contribution 393.48 15.07 5.93 5.93 Total: -1.00 -32.57 393.48 -8.51 -41.08 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: -8.53 Total: -3.63 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -0.06 Total: -1.62 kcal Atomic # 7 Polarization: -31.77 SS G_CDS: 0.18 Total: -31.59 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -1.34 Total: -26.97 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -4.68 Total: 16.80 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.57 -8.51 -41.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496514396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -147.704 kcal (2) G-P(sol) polarization free energy of solvation -32.573 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.079 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.783 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds