Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34638 * 116.99776 * 2 1 4 4 O 1.21513 * 119.99956 * 0.02562 * 3 2 1 5 5 N 1.34777 * 119.99672 * 180.27362 * 3 2 1 6 6 C 1.46927 * 120.63303 * 359.73157 * 5 3 2 7 7 C 1.53191 * 108.77041 * 233.58299 * 6 5 3 8 8 C 1.53040 * 109.31454 * 305.36017 * 7 6 5 9 9 C 1.53039 * 109.53579 * 61.36967 * 8 7 6 10 10 H 1.08997 * 109.49788 * 58.58384 * 9 8 7 11 11 C 1.50696 * 109.49731 * 178.64927 * 9 8 7 12 12 O 1.20827 * 120.00585 * 0.02562 * 11 9 8 13 13 O 1.34233 * 119.99996 * 179.97438 * 11 9 8 14 14 C 1.45206 * 116.99924 * 179.97438 * 13 11 9 15 15 C 1.52996 * 109.46933 * 180.02562 * 14 13 11 16 16 H 1.09004 * 109.41324 * 55.14698 * 15 14 13 17 17 C 1.52956 * 109.41418 * 174.99920 * 15 14 13 18 18 C 1.53229 * 109.40637 * 183.70413 * 17 15 14 19 19 C 1.51269 * 108.53562 * 305.37405 * 18 17 15 20 20 C 1.37881 * 120.85017 * 231.36465 * 19 18 17 21 21 N 1.31517 * 119.99855 * 0.02562 * 20 19 18 22 22 Si 1.86795 * 120.00049 * 180.02562 * 20 19 18 23 23 H 1.48502 * 109.47001 * 90.00248 * 22 20 19 24 24 H 1.48500 * 109.47293 * 210.00028 * 22 20 19 25 25 H 1.48495 * 109.47374 * 330.00546 * 22 20 19 26 26 C 1.51263 * 118.29886 * 51.35103 * 19 18 17 27 27 C 1.52959 * 109.41752 * 295.35444 * 15 14 13 28 28 C 1.46933 * 120.62803 * 179.44517 * 5 3 2 29 29 H 1.08992 * 109.47099 * 299.99376 * 1 2 3 30 30 H 1.09004 * 109.47111 * 60.00187 * 1 2 3 31 31 H 1.09001 * 109.46883 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.58548 * 353.37064 * 6 5 3 33 33 H 1.09001 * 109.58489 * 113.65465 * 6 5 3 34 34 H 1.09001 * 109.50111 * 65.31901 * 7 6 5 35 35 H 1.09007 * 109.49301 * 185.41249 * 7 6 5 36 36 H 1.09002 * 109.46093 * 181.39062 * 8 7 6 37 37 H 1.09003 * 109.46241 * 301.36285 * 8 7 6 38 38 H 1.09004 * 109.47172 * 300.00370 * 14 13 11 39 39 H 1.09000 * 109.46839 * 60.00909 * 14 13 11 40 40 H 1.08997 * 109.48612 * 303.68841 * 17 15 14 41 41 H 1.09010 * 109.47903 * 63.72615 * 17 15 14 42 42 H 1.08993 * 109.62728 * 65.09334 * 18 17 15 43 43 H 1.09006 * 109.62507 * 185.46707 * 18 17 15 44 44 H 0.97002 * 119.99651 * 179.97438 * 21 20 19 45 45 H 1.08999 * 109.63085 * 68.36612 * 26 19 18 46 46 H 1.09000 * 109.62479 * 188.74227 * 26 19 18 47 47 H 1.09003 * 109.48157 * 296.27877 * 27 15 14 48 48 H 1.09003 * 109.47784 * 56.31599 * 27 15 14 49 49 H 1.08997 * 109.58923 * 246.20492 * 28 5 3 50 50 H 1.09000 * 109.58540 * 6.63008 * 28 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0632 1.1997 0.0000 4 8 1.4014 2.2187 0.0005 5 7 3.4091 1.2702 -0.0056 6 6 4.2229 0.0469 -0.0058 7 6 5.2175 0.1163 1.1573 8 6 6.0280 1.4103 1.0536 9 6 5.0866 2.6130 1.1508 10 1 4.5445 2.5751 2.0957 11 6 5.8890 3.8866 1.0820 12 8 7.0908 3.8382 0.9665 13 8 5.2686 5.0752 1.1480 14 6 6.1047 6.2601 1.0760 15 6 5.2270 7.5099 1.1673 16 1 4.6210 7.4617 2.0721 17 6 6.1163 8.7533 1.2170 18 6 5.2417 9.9979 1.4015 19 6 4.1997 10.0202 0.3051 20 6 4.0142 11.1444 -0.4712 21 7 4.7485 12.2156 -0.2634 22 14 2.7201 11.1461 -1.8183 23 1 1.4274 11.6205 -1.2622 24 1 3.1487 12.0506 -2.9153 25 1 2.5553 9.7688 -2.3481 26 6 3.3667 8.7774 0.0822 27 6 4.3093 7.5772 -0.0546 28 6 4.0905 2.5719 -0.0179 29 1 -0.3633 0.5137 0.8900 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 3.5765 -0.8220 0.1176 33 1 4.7646 -0.0315 -0.9484 34 1 4.6742 0.1019 2.1021 35 1 5.8911 -0.7396 1.1114 36 1 6.7536 1.4504 1.8661 37 1 6.5515 1.4354 0.0978 38 1 6.8152 6.2543 1.9027 39 1 6.6472 6.2651 0.1306 40 1 6.8112 8.6702 2.0526 41 1 6.6762 8.8373 0.2854 42 1 4.7499 9.9589 2.3734 43 1 5.8609 10.8929 1.3403 44 1 4.6182 13.0064 -0.8098 45 1 2.7011 8.6254 0.9319 46 1 2.7780 8.8898 -0.8283 47 1 4.9118 7.6890 -0.9560 48 1 3.7234 6.6604 -0.1200 49 1 4.6235 2.6965 -0.9605 50 1 3.3566 3.3696 0.0974 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000496514396.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = -206.867555 kcal Electronic energy + Delta-G solvation = -30412.355670 eV Core-core repulsion = 26210.015778 eV Total energy + Delta-G solvation = -4202.339893 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.04775 -41.43950 -39.40813 -38.76276 -37.45818 -37.23081 -34.55613 -34.19239 -32.61513 -31.62824 -30.93590 -28.75407 -27.12462 -26.25726 -25.45550 -23.56071 -23.06385 -22.73770 -21.78967 -20.97731 -20.70509 -19.32957 -18.55875 -18.20201 -18.05195 -17.67491 -17.49577 -17.17235 -16.41844 -15.86282 -15.77276 -15.42341 -15.21838 -15.08176 -14.91244 -14.62102 -14.49301 -14.45362 -14.25504 -13.90373 -13.80956 -13.75939 -13.28911 -12.95883 -12.88901 -12.70450 -12.63406 -12.51410 -12.39509 -12.13484 -12.05135 -11.86855 -11.81261 -11.80100 -11.68740 -11.59436 -11.45589 -11.44216 -11.24649 -10.71141 -10.53856 -10.41342 -9.93961 -8.16429 -6.09729 0.88375 1.19231 1.37783 1.40505 1.48808 1.61384 1.68388 2.41026 2.86842 3.09810 3.44325 3.55021 3.64052 3.88429 3.96328 3.96854 4.06323 4.09818 4.18607 4.35692 4.37761 4.42729 4.47450 4.49689 4.54905 4.62014 4.71183 4.72213 4.72988 4.77812 4.85948 4.99545 5.00955 5.06203 5.10802 5.15115 5.23056 5.27889 5.29992 5.32584 5.34690 5.45647 5.49057 5.61636 5.66024 5.79088 5.89012 6.16518 6.38043 6.65730 6.96814 7.12185 7.48006 8.94545 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.012984 B = 0.002734 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2156.011808 B =10237.238092 C =12005.255846 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.049 3.951 2 O -0.366 6.366 3 C 0.644 3.356 4 O -0.607 6.607 5 N -0.590 5.590 6 C 0.104 3.896 7 C -0.124 4.124 8 C -0.103 4.103 9 C -0.086 4.086 10 H 0.121 0.879 11 C 0.467 3.533 12 O -0.528 6.528 13 O -0.356 6.356 14 C 0.080 3.920 15 C -0.065 4.065 16 H 0.069 0.931 17 C -0.093 4.093 18 C 0.006 3.994 19 C -0.496 4.496 20 C 0.019 3.981 21 N -0.933 5.933 22 Si 0.938 3.062 23 H -0.276 1.276 24 H -0.292 1.292 25 H -0.251 1.251 26 C -0.025 4.025 27 C -0.095 4.095 28 C 0.139 3.861 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.140 0.860 32 H 0.107 0.893 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.075 0.925 39 H 0.068 0.932 40 H 0.056 0.944 41 H 0.044 0.956 42 H 0.000 1.000 43 H 0.026 0.974 44 H 0.262 0.738 45 H 0.018 0.982 46 H 0.032 0.968 47 H 0.044 0.956 48 H 0.056 0.944 49 H 0.088 0.912 50 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.622 -31.861 1.552 31.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 O -0.279 6.279 3 C 0.399 3.601 4 O -0.498 6.498 5 N -0.330 5.330 6 C -0.017 4.017 7 C -0.162 4.162 8 C -0.140 4.140 9 C -0.106 4.106 10 H 0.139 0.861 11 C 0.310 3.690 12 O -0.417 6.417 13 O -0.272 6.272 14 C 0.007 3.993 15 C -0.084 4.084 16 H 0.087 0.913 17 C -0.130 4.130 18 C -0.031 4.031 19 C -0.516 4.516 20 C -0.178 4.178 21 N -0.574 5.574 22 Si 0.764 3.236 23 H -0.201 1.201 24 H -0.218 1.218 25 H -0.175 1.175 26 C -0.062 4.062 27 C -0.133 4.133 28 C 0.017 3.983 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.158 0.842 32 H 0.125 0.875 33 H 0.107 0.893 34 H 0.091 0.909 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.095 0.905 38 H 0.093 0.907 39 H 0.086 0.914 40 H 0.075 0.925 41 H 0.062 0.938 42 H 0.019 0.981 43 H 0.045 0.955 44 H 0.071 0.929 45 H 0.037 0.963 46 H 0.050 0.950 47 H 0.062 0.938 48 H 0.075 0.925 49 H 0.106 0.894 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.512 -31.406 1.448 31.475 hybrid contribution -0.547 1.267 -0.616 1.512 sum -2.060 -30.138 0.832 30.220 Atomic orbital electron populations 1.23505 0.72910 1.05693 1.02397 1.86223 1.25537 1.29421 1.86704 1.18249 0.83531 0.82317 0.75988 1.91028 1.65149 1.36370 1.57292 1.46921 1.01688 1.08970 1.75391 1.22108 0.93962 0.85288 1.00348 1.21931 0.97959 0.97692 0.98593 1.21494 0.96706 0.91506 1.04333 1.21587 0.97080 0.89382 1.02561 0.86094 1.23927 0.87321 0.85940 0.71774 1.90650 1.16845 1.88199 1.45987 1.86537 1.42714 1.15292 1.82666 1.23216 0.92528 0.81200 1.02345 1.20940 0.96526 0.91367 0.99553 0.91268 1.21443 0.97042 0.94625 0.99931 1.19338 0.94897 0.94370 0.94517 1.20696 1.17946 0.96934 1.16002 1.25612 0.97750 0.95028 0.99452 1.69976 1.41585 1.04144 1.41673 0.85847 0.79799 0.78286 0.79637 1.20137 1.21825 1.17526 1.19848 0.95306 0.93989 0.97055 1.21471 0.97634 0.97580 0.96635 1.21503 0.94608 0.84598 0.97594 0.92318 0.92420 0.84218 0.87468 0.89295 0.90915 0.86886 0.90297 0.90525 0.90662 0.91397 0.92544 0.93756 0.98133 0.95488 0.92901 0.96324 0.94989 0.93752 0.92518 0.89378 0.89273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.59 10.56 113.37 1.20 1.79 16 2 O -0.37 -6.22 9.21 -55.47 -0.51 -6.73 16 3 C 0.64 14.57 8.43 129.79 1.09 15.66 16 4 O -0.61 -18.83 15.54 19.80 0.31 -18.52 16 5 N -0.59 -10.38 2.97 -948.40 -2.81 -13.19 16 6 C 0.10 0.99 6.44 86.36 0.56 1.55 16 7 C -0.12 -0.95 6.08 30.67 0.19 -0.76 16 8 C -0.10 -1.34 4.46 30.62 0.14 -1.20 16 9 C -0.09 -1.57 2.79 -11.32 -0.03 -1.60 16 10 H 0.12 2.05 8.14 -2.39 -0.02 2.03 16 11 C 0.47 11.99 7.26 71.23 0.52 12.51 16 12 O -0.53 -15.71 15.73 21.96 0.35 -15.36 16 13 O -0.36 -10.58 9.61 -51.45 -0.49 -11.08 16 14 C 0.08 2.55 4.84 71.98 0.35 2.90 16 15 C -0.07 -2.44 2.33 -10.82 -0.03 -2.46 16 16 H 0.07 2.61 8.14 -2.38 -0.02 2.59 16 17 C -0.09 -3.84 5.21 30.66 0.16 -3.68 16 18 C 0.01 0.32 5.96 30.11 0.18 0.50 16 19 C -0.50 -26.74 5.51 -16.17 -0.09 -26.83 16 20 C 0.02 1.08 5.46 84.66 0.46 1.55 16 21 N -0.93 -55.98 12.73 21.45 0.27 -55.71 16 22 Si 0.94 44.42 27.53 68.60 1.89 46.31 16 23 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 H -0.25 -11.24 6.11 99.48 0.61 -10.63 16 26 C -0.02 -1.15 5.59 30.10 0.17 -0.98 16 27 C -0.10 -3.86 5.15 30.66 0.16 -3.70 16 28 C 0.14 2.76 5.68 86.51 0.49 3.25 16 29 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 31 H 0.14 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.11 0.82 6.93 -2.39 -0.02 0.81 16 33 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.11 0.34 8.14 -2.38 -0.02 0.33 16 36 H 0.08 1.08 8.07 -2.39 -0.02 1.06 16 37 H 0.08 1.04 8.13 -2.39 -0.02 1.02 16 38 H 0.08 2.23 8.13 -2.39 -0.02 2.21 16 39 H 0.07 2.16 8.13 -2.39 -0.02 2.14 16 40 H 0.06 2.05 8.14 -2.39 -0.02 2.03 16 41 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 42 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 43 H 0.03 1.51 7.08 -2.38 -0.02 1.50 16 44 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.03 1.49 4.59 -2.39 -0.01 1.48 16 47 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 48 H 0.06 2.10 7.71 -2.39 -0.02 2.08 16 49 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 50 H 0.09 2.27 7.00 -2.39 -0.02 2.26 16 Total: -1.00 -71.77 393.48 5.33 -66.44 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.82 Total: 9.36 kcal Atomic # 6 Polarization: -7.03 SS G_CDS: 5.51 Total: -1.52 kcal Atomic # 7 Polarization: -66.36 SS G_CDS: -2.54 Total: -68.90 kcal Atomic # 8 Polarization: -51.34 SS G_CDS: -0.35 Total: -51.69 kcal Atomic # 14 Polarization: 44.42 SS G_CDS: 1.89 Total: 46.31 kcal Total: -71.77 5.33 -66.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000496514396.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.428 kcal (2) G-P(sol) polarization free energy of solvation -71.768 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -212.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.328 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.440 kcal (6) G-S(sol) free energy of system = (1) + (5) -206.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds