Wall clock time and date at job start Sat Apr 11 2020 05:45:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39952 * 125.81537 * 2 1 4 4 C 1.35279 * 107.97040 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.19371 * 179.97438 * 4 3 2 6 6 N 1.35838 * 107.61195 * 0.26057 * 4 3 2 7 7 C 1.39818 * 126.10328 * 179.74044 * 6 4 3 8 8 C 1.38944 * 119.68743 * 154.72868 * 7 6 4 9 9 C 1.38423 * 119.10306 * 179.72791 * 8 7 6 10 10 C 1.38802 * 118.48236 * 0.53229 * 9 8 7 11 11 C 1.50694 * 120.34922 * 179.75203 * 10 9 8 12 12 N 1.46902 * 109.46970 * 269.97207 * 11 10 9 13 13 C 1.46900 * 110.99976 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47482 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.46748 * 55.00159 * 14 13 12 16 16 C 1.47203 * 109.47036 * 295.00361 * 14 13 12 17 17 N 8.90408 * 147.11716 * 327.55510 * 4 1 2 18 18 C 1.52996 * 109.47263 * 175.00046 * 14 13 12 19 19 C 1.50699 * 109.46994 * 185.00215 * 18 14 13 20 20 H 1.08006 * 120.00315 * 359.97438 * 19 18 14 21 21 C 1.37873 * 120.00187 * 180.02562 * 19 18 14 22 22 N 1.31513 * 120.00094 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00016 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47295 * 89.99799 * 23 21 19 25 25 H 1.48495 * 109.47380 * 209.99976 * 23 21 19 26 26 H 1.48500 * 109.46909 * 329.99991 * 23 21 19 27 27 C 1.38122 * 119.29329 * 359.72589 * 10 9 8 28 28 N 1.31897 * 120.84116 * 0.02562 * 27 10 9 29 29 N 1.30813 * 125.81579 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47003 * 90.00317 * 1 2 3 31 31 H 1.09002 * 109.46960 * 210.00599 * 1 2 3 32 32 H 1.09004 * 109.46789 * 330.00676 * 1 2 3 33 33 H 1.08004 * 126.01842 * 0.03182 * 3 2 1 34 34 H 1.09002 * 109.47152 * 90.02378 * 5 4 3 35 35 H 1.09001 * 109.46980 * 330.02479 * 5 4 3 36 36 H 1.09004 * 109.47113 * 210.02460 * 5 4 3 37 37 H 1.08001 * 120.45120 * 359.97244 * 8 7 6 38 38 H 1.07999 * 120.75610 * 180.23461 * 9 8 7 39 39 H 1.08998 * 109.47493 * 29.97667 * 11 10 9 40 40 H 1.09002 * 109.47142 * 149.97630 * 11 10 9 41 41 H 1.00898 * 110.99891 * 303.95636 * 12 11 10 42 42 H 1.09003 * 109.47487 * 300.00126 * 13 12 11 43 43 H 1.09007 * 109.47062 * 60.00105 * 13 12 11 44 44 H 1.08997 * 109.47136 * 305.00257 * 18 14 13 45 45 H 1.09000 * 109.47148 * 65.00493 * 18 14 13 46 46 H 0.97003 * 119.99858 * 180.02562 * 22 21 19 47 47 H 1.08002 * 119.57441 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3260 1.1349 0.0000 4 6 3.6137 0.7203 -0.0006 5 6 4.8335 1.6053 -0.0013 6 7 3.6082 -0.6380 -0.0068 7 6 4.7345 -1.4665 -0.0146 8 6 4.6439 -2.7559 0.4951 9 6 5.7650 -3.5676 0.4762 10 6 6.9451 -3.0545 -0.0440 11 6 8.1922 -3.8996 -0.0800 12 7 8.9493 -3.7084 1.1643 13 6 10.1749 -4.5183 1.1645 14 6 10.9351 -4.2927 2.4730 15 1 10.2765 -4.5008 3.3163 16 6 11.3919 -2.8950 2.5403 17 7 11.7445 -1.8168 2.5950 18 6 12.1448 -5.2279 2.5278 19 6 12.8228 -5.0942 3.8669 20 1 12.4305 -4.4102 4.6051 21 6 13.9447 -5.8441 4.1496 22 7 14.5367 -5.7270 5.3181 23 14 14.6239 -7.0265 2.8728 24 1 15.6146 -6.3202 2.0215 25 1 15.2831 -8.1681 3.5564 26 1 13.5136 -7.5312 2.0255 27 6 6.9639 -1.7613 -0.5288 28 7 5.8779 -1.0132 -0.5020 29 7 2.2725 -1.0608 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9893 2.1611 0.0005 34 1 5.1284 1.8185 1.0262 35 1 4.6046 2.5391 -0.5148 36 1 5.6499 1.0984 -0.5159 37 1 3.7104 -3.1212 0.8969 38 1 5.7236 -4.5755 0.8619 39 1 7.9170 -4.9495 -0.1803 40 1 8.8079 -3.6027 -0.9291 41 1 9.1607 -2.7331 1.3127 42 1 9.9138 -5.5726 1.0727 43 1 10.8042 -4.2253 0.3240 44 1 11.8148 -6.2573 2.3888 45 1 12.8462 -4.9613 1.7372 46 1 15.3262 -6.2544 5.5168 47 1 7.8798 -1.3573 -0.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567678540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:30 Heat of formation + Delta-G solvation = 136.519534 kcal Electronic energy + Delta-G solvation = -27102.683741 eV Core-core repulsion = 23287.128652 eV Total energy + Delta-G solvation = -3815.555089 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96785 -40.40663 -37.71222 -35.81501 -34.49278 -33.67422 -33.02844 -32.61199 -31.75620 -30.71476 -28.74022 -27.37272 -27.07418 -25.01712 -24.23343 -22.81247 -22.25814 -21.42020 -20.69642 -20.13453 -18.00034 -17.18605 -16.95122 -16.87923 -16.12056 -15.81619 -15.21216 -15.19011 -15.10622 -14.36179 -14.18299 -14.13258 -13.91108 -13.60110 -13.56873 -13.41851 -13.34283 -13.26274 -12.90602 -12.71102 -12.64819 -12.48254 -12.32026 -12.23994 -12.10347 -11.78501 -11.51158 -11.25994 -10.98587 -10.92668 -10.43861 -10.34815 -10.19963 -10.03428 -9.87627 -9.81769 -9.37713 -9.17699 -8.66687 -8.64784 -8.46281 -6.14107 -4.15226 0.34490 0.85164 1.64100 1.84330 2.36742 3.23529 3.30623 3.31323 3.32208 3.46294 3.51146 3.93980 4.10799 4.14645 4.32489 4.34556 4.43806 4.55456 4.59391 4.63300 4.72772 4.86831 5.06905 5.14762 5.20328 5.20445 5.24704 5.28595 5.30264 5.33839 5.36827 5.41485 5.50207 5.50819 5.63625 5.69927 5.89345 5.91549 5.96809 6.07342 6.10801 6.27163 6.28302 6.80143 6.82509 6.89370 7.06384 7.10884 7.18590 7.56592 7.59283 8.27443 8.38176 8.89211 9.45355 10.98934 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.001755 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.839250 B =15953.378650 C =16315.575820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.088 3.912 3 C -0.271 4.271 4 C 0.115 3.885 5 C -0.107 4.107 6 N -0.326 5.326 7 C 0.364 3.636 8 C -0.159 4.159 9 C -0.030 4.030 10 C -0.139 4.139 11 C 0.102 3.898 12 N -0.687 5.687 13 C 0.065 3.935 14 C 0.017 3.983 15 H 0.117 0.883 16 C 0.236 3.764 17 N -0.466 5.466 18 C -0.004 4.004 19 C -0.530 4.530 20 H 0.074 0.926 21 C 0.071 3.929 22 N -0.896 5.896 23 Si 0.878 3.122 24 H -0.277 1.277 25 H -0.286 1.286 26 H -0.262 1.262 27 C 0.135 3.865 28 N -0.500 5.500 29 N -0.287 5.287 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.153 0.847 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.103 0.897 37 H 0.145 0.855 38 H 0.148 0.852 39 H 0.089 0.911 40 H 0.045 0.955 41 H 0.341 0.659 42 H 0.094 0.906 43 H 0.038 0.962 44 H 0.040 0.960 45 H 0.019 0.981 46 H 0.265 0.735 47 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.013 7.955 -15.100 31.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.080 4.080 3 C -0.299 4.299 4 C -0.008 4.008 5 C -0.165 4.165 6 N -0.104 5.104 7 C 0.137 3.863 8 C -0.182 4.182 9 C -0.056 4.056 10 C -0.142 4.142 11 C -0.027 4.027 12 N -0.318 5.318 13 C -0.065 4.065 14 C -0.005 4.005 15 H 0.135 0.865 16 C -0.081 4.081 17 N -0.143 5.143 18 C -0.043 4.043 19 C -0.567 4.567 20 H 0.092 0.908 21 C -0.131 4.131 22 N -0.534 5.534 23 Si 0.705 3.295 24 H -0.203 1.203 25 H -0.212 1.212 26 H -0.187 1.187 27 C -0.024 4.024 28 N -0.213 5.213 29 N -0.107 5.107 30 H 0.098 0.902 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.171 0.829 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.121 0.879 37 H 0.163 0.837 38 H 0.166 0.834 39 H 0.108 0.892 40 H 0.063 0.937 41 H 0.159 0.841 42 H 0.112 0.888 43 H 0.056 0.944 44 H 0.058 0.942 45 H 0.037 0.963 46 H 0.075 0.925 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges -25.548 8.592 -14.875 30.787 hybrid contribution 0.947 -0.444 -0.737 1.280 sum -24.601 8.147 -15.612 30.254 Atomic orbital electron populations 1.20231 0.86013 1.03652 1.03255 1.22540 0.97201 0.90684 0.97579 1.21235 0.90838 1.00022 1.17806 1.21519 0.97691 0.83661 0.97956 1.20752 0.94259 0.97763 1.03721 1.45603 1.03645 1.03685 1.57450 1.17686 0.84544 0.88225 0.95833 1.21676 1.01075 0.93220 1.02194 1.21464 0.90577 1.00202 0.93406 1.20858 0.96578 0.96060 1.00662 1.20796 0.90854 0.99461 0.91617 1.60615 1.22911 1.13648 1.34644 1.22144 0.88874 0.99169 0.96335 1.19076 0.98971 0.83808 0.98654 0.86530 1.29159 0.92142 0.94518 0.92252 1.81049 1.09971 1.13827 1.09452 1.19631 0.91569 0.94304 0.98762 1.21024 1.11702 1.25245 0.98766 0.90796 1.24997 0.96299 0.96606 0.95224 1.69906 1.20623 1.41068 1.21795 0.86809 0.79682 0.81059 0.81925 1.20325 1.21224 1.18695 1.22470 0.94931 0.89835 0.95138 1.66911 0.98741 1.38162 1.17437 1.77421 0.84535 1.22379 1.26369 0.90193 0.90626 0.90075 0.82887 0.90425 0.89925 0.87885 0.83719 0.83378 0.89236 0.93660 0.84051 0.88782 0.94385 0.94234 0.96252 0.92533 0.81890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.44 36.01 0.38 -0.05 16 2 C 0.09 0.87 7.21 -82.38 -0.59 0.28 16 3 C -0.27 -2.58 10.65 -39.99 -0.43 -3.00 16 4 C 0.11 1.25 6.89 -81.87 -0.56 0.69 16 5 C -0.11 -0.92 9.98 36.01 0.36 -0.56 16 6 N -0.33 -4.06 3.78 -8.38 -0.03 -4.09 16 7 C 0.36 4.37 7.36 -154.37 -1.14 3.23 16 8 C -0.16 -1.67 9.74 -39.25 -0.38 -2.05 16 9 C -0.03 -0.27 9.85 -39.30 -0.39 -0.65 16 10 C -0.14 -1.24 5.41 -104.46 -0.57 -1.81 16 11 C 0.10 0.86 5.83 -4.98 -0.03 0.83 16 12 N -0.69 -7.50 6.49 -115.05 -0.75 -8.24 16 13 C 0.06 0.78 5.12 -3.82 -0.02 0.76 16 14 C 0.02 0.28 2.42 -93.41 -0.23 0.05 16 15 H 0.12 1.91 8.14 -51.92 -0.42 1.49 16 16 C 0.24 4.51 12.98 -20.77 -0.27 4.24 16 17 N -0.47 -9.82 18.54 42.14 0.78 -9.03 16 18 C 0.00 -0.07 3.49 -27.89 -0.10 -0.17 16 19 C -0.53 -13.98 9.15 -34.44 -0.32 -14.29 16 20 H 0.07 2.16 7.84 -52.48 -0.41 1.74 16 21 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 22 N -0.90 -26.75 13.96 55.43 0.77 -25.97 16 23 Si 0.88 20.24 27.47 -169.99 -4.67 15.57 16 24 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 25 H -0.29 -6.63 7.11 56.52 0.40 -6.22 16 26 H -0.26 -5.54 6.54 56.52 0.37 -5.17 16 27 C 0.13 1.28 10.85 -17.57 -0.19 1.09 16 28 N -0.50 -5.65 7.65 -12.29 -0.09 -5.75 16 29 N -0.29 -3.52 12.10 33.69 0.41 -3.12 16 30 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 31 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.15 1.03 8.06 -52.48 -0.42 0.61 16 34 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.08 0.53 8.14 -51.93 -0.42 0.11 16 36 H 0.10 1.00 5.85 -51.93 -0.30 0.70 16 37 H 0.14 1.43 7.91 -52.49 -0.42 1.02 16 38 H 0.15 1.02 8.06 -52.49 -0.42 0.60 16 39 H 0.09 0.66 8.09 -51.93 -0.42 0.24 16 40 H 0.05 0.34 8.09 -51.93 -0.42 -0.08 16 41 H 0.34 4.04 7.80 -39.29 -0.31 3.74 16 42 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 44 H 0.04 0.76 7.20 -51.93 -0.37 0.39 16 45 H 0.02 0.40 7.57 -51.93 -0.39 0.00 16 46 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 47 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -33.49 401.55 -8.95 -42.44 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: -6.86 Total: 1.68 kcal Atomic # 6 Polarization: -4.97 SS G_CDS: -4.56 Total: -9.54 kcal Atomic # 7 Polarization: -57.29 SS G_CDS: 1.09 Total: -56.20 kcal Atomic # 14 Polarization: 20.24 SS G_CDS: -4.67 Total: 15.57 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -33.49 -8.95 -42.44 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567678540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 178.958 kcal (2) G-P(sol) polarization free energy of solvation -33.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 145.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 136.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds