Wall clock time and date at job start Sat Apr 11 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39952 * 125.81537 * 2 1 4 4 C 1.35279 * 107.97040 * 180.02562 * 3 2 1 5 5 C 1.50703 * 126.19371 * 179.97438 * 4 3 2 6 6 N 1.35838 * 107.61195 * 0.26057 * 4 3 2 7 7 C 1.39818 * 126.10328 * 179.74044 * 6 4 3 8 8 C 1.38944 * 119.68743 * 154.72868 * 7 6 4 9 9 C 1.38423 * 119.10306 * 179.72791 * 8 7 6 10 10 C 1.38802 * 118.48236 * 0.53229 * 9 8 7 11 11 C 1.50694 * 120.34922 * 179.75203 * 10 9 8 12 12 N 1.46902 * 109.46970 * 269.97207 * 11 10 9 13 13 C 1.46900 * 110.99976 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47482 * 179.97438 * 13 12 11 15 15 H 1.09007 * 109.46748 * 55.00159 * 14 13 12 16 16 C 1.47203 * 109.47036 * 295.00361 * 14 13 12 17 17 N 8.90408 * 147.11716 * 327.55510 * 4 1 2 18 18 C 1.52996 * 109.47263 * 175.00046 * 14 13 12 19 19 C 1.50699 * 109.46994 * 185.00215 * 18 14 13 20 20 H 1.08006 * 120.00315 * 359.97438 * 19 18 14 21 21 C 1.37873 * 120.00187 * 180.02562 * 19 18 14 22 22 N 1.31513 * 120.00094 * 179.97438 * 21 19 18 23 23 Si 1.86802 * 120.00016 * 359.97438 * 21 19 18 24 24 H 1.48494 * 109.47295 * 89.99799 * 23 21 19 25 25 H 1.48495 * 109.47380 * 209.99976 * 23 21 19 26 26 H 1.48500 * 109.46909 * 329.99991 * 23 21 19 27 27 C 1.38122 * 119.29329 * 359.72589 * 10 9 8 28 28 N 1.31897 * 120.84116 * 0.02562 * 27 10 9 29 29 N 1.30813 * 125.81579 * 180.02562 * 2 1 3 30 30 H 1.08997 * 109.47003 * 90.00317 * 1 2 3 31 31 H 1.09002 * 109.46960 * 210.00599 * 1 2 3 32 32 H 1.09004 * 109.46789 * 330.00676 * 1 2 3 33 33 H 1.08004 * 126.01842 * 0.03182 * 3 2 1 34 34 H 1.09002 * 109.47152 * 90.02378 * 5 4 3 35 35 H 1.09001 * 109.46980 * 330.02479 * 5 4 3 36 36 H 1.09004 * 109.47113 * 210.02460 * 5 4 3 37 37 H 1.08001 * 120.45120 * 359.97244 * 8 7 6 38 38 H 1.07999 * 120.75610 * 180.23461 * 9 8 7 39 39 H 1.08998 * 109.47493 * 29.97667 * 11 10 9 40 40 H 1.09002 * 109.47142 * 149.97630 * 11 10 9 41 41 H 1.00898 * 110.99891 * 303.95636 * 12 11 10 42 42 H 1.09003 * 109.47487 * 300.00126 * 13 12 11 43 43 H 1.09007 * 109.47062 * 60.00105 * 13 12 11 44 44 H 1.08997 * 109.47136 * 305.00257 * 18 14 13 45 45 H 1.09000 * 109.47148 * 65.00493 * 18 14 13 46 46 H 0.97003 * 119.99858 * 180.02562 * 22 21 19 47 47 H 1.08002 * 119.57441 * 179.97438 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3260 1.1349 0.0000 4 6 3.6137 0.7203 -0.0006 5 6 4.8335 1.6053 -0.0013 6 7 3.6082 -0.6380 -0.0068 7 6 4.7345 -1.4665 -0.0146 8 6 4.6439 -2.7559 0.4951 9 6 5.7650 -3.5676 0.4762 10 6 6.9451 -3.0545 -0.0440 11 6 8.1922 -3.8996 -0.0800 12 7 8.9493 -3.7084 1.1643 13 6 10.1749 -4.5183 1.1645 14 6 10.9351 -4.2927 2.4730 15 1 10.2765 -4.5008 3.3163 16 6 11.3919 -2.8950 2.5403 17 7 11.7445 -1.8168 2.5950 18 6 12.1448 -5.2279 2.5278 19 6 12.8228 -5.0942 3.8669 20 1 12.4305 -4.4102 4.6051 21 6 13.9447 -5.8441 4.1496 22 7 14.5367 -5.7270 5.3181 23 14 14.6239 -7.0265 2.8728 24 1 15.6146 -6.3202 2.0215 25 1 15.2831 -8.1681 3.5564 26 1 13.5136 -7.5312 2.0255 27 6 6.9639 -1.7613 -0.5288 28 7 5.8779 -1.0132 -0.5020 29 7 2.2725 -1.0608 -0.0005 30 1 -0.3633 -0.0001 -1.0276 31 1 -0.3633 -0.8900 0.5139 32 1 -0.3633 0.8901 0.5138 33 1 1.9893 2.1611 0.0005 34 1 5.1284 1.8185 1.0262 35 1 4.6046 2.5391 -0.5148 36 1 5.6499 1.0984 -0.5159 37 1 3.7104 -3.1212 0.8969 38 1 5.7236 -4.5755 0.8619 39 1 7.9170 -4.9495 -0.1803 40 1 8.8079 -3.6027 -0.9291 41 1 9.1607 -2.7331 1.3127 42 1 9.9138 -5.5726 1.0727 43 1 10.8042 -4.2253 0.3240 44 1 11.8148 -6.2573 2.3888 45 1 12.8462 -4.9613 1.7372 46 1 15.3262 -6.2544 5.5168 47 1 7.8798 -1.3573 -0.9342 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567678540.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:29 Heat of formation + Delta-G solvation = 116.209871 kcal Electronic energy + Delta-G solvation = -27103.564434 eV Core-core repulsion = 23287.128652 eV Total energy + Delta-G solvation = -3816.435782 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.70875 -41.13561 -38.92396 -36.91855 -35.65985 -35.01449 -33.90620 -33.71190 -32.91525 -31.57225 -29.60546 -28.39342 -28.04480 -25.98011 -24.95819 -23.88403 -23.38097 -22.74574 -21.43212 -20.83639 -18.93861 -18.74747 -18.30101 -17.80718 -17.04953 -16.59226 -16.52112 -15.98005 -15.86537 -15.65722 -15.13907 -14.85312 -14.81274 -14.71270 -14.60698 -14.40925 -14.22063 -14.07331 -14.01497 -13.92291 -13.65263 -13.31132 -13.28275 -13.20190 -13.05717 -12.95475 -12.75259 -12.50728 -12.45137 -11.90299 -11.71660 -11.69935 -11.59408 -11.30337 -11.04327 -10.94293 -10.72369 -10.59605 -9.94921 -9.43734 -9.22585 -8.23297 -6.29160 -0.41073 0.13663 0.88928 1.11662 1.45018 1.46204 1.57378 1.66401 1.95748 1.96895 2.42526 2.56616 3.13167 3.22236 3.25753 3.32394 3.41968 3.67614 3.74413 3.87412 3.91382 4.07075 4.14204 4.21320 4.44920 4.45810 4.52678 4.61120 4.63736 4.66412 4.70225 4.73915 4.79701 4.82386 4.91879 4.94440 5.01022 5.01647 5.10073 5.21643 5.28341 5.28965 5.42166 5.49047 5.63452 5.65524 6.01300 6.06691 6.26894 6.29211 6.38335 6.76031 6.81473 6.82156 7.35425 8.93679 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.025132 B = 0.001755 C = 0.001716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.839250 B =15953.378650 C =16315.575820 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C 0.083 3.917 3 C -0.273 4.273 4 C 0.092 3.908 5 C -0.102 4.102 6 N -0.341 5.341 7 C 0.340 3.660 8 C -0.170 4.170 9 C -0.026 4.026 10 C -0.136 4.136 11 C 0.106 3.894 12 N -0.694 5.694 13 C 0.076 3.924 14 C 0.022 3.978 15 H 0.117 0.883 16 C 0.247 3.753 17 N -0.508 5.508 18 C -0.002 4.002 19 C -0.532 4.532 20 H 0.026 0.974 21 C 0.000 4.000 22 N -0.956 5.956 23 Si 0.949 3.051 24 H -0.278 1.278 25 H -0.292 1.292 26 H -0.218 1.218 27 C 0.127 3.873 28 N -0.514 5.514 29 N -0.322 5.322 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.180 0.820 34 H 0.078 0.922 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.143 0.857 38 H 0.171 0.829 39 H 0.109 0.891 40 H 0.060 0.940 41 H 0.334 0.666 42 H 0.121 0.879 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.027 0.973 46 H 0.264 0.736 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.232 6.701 -17.717 33.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.085 4.085 3 C -0.300 4.300 4 C -0.031 4.031 5 C -0.160 4.160 6 N -0.120 5.120 7 C 0.114 3.886 8 C -0.193 4.193 9 C -0.052 4.052 10 C -0.139 4.139 11 C -0.022 4.022 12 N -0.324 5.324 13 C -0.053 4.053 14 C 0.000 4.000 15 H 0.135 0.865 16 C -0.069 4.069 17 N -0.186 5.186 18 C -0.041 4.041 19 C -0.570 4.570 20 H 0.044 0.956 21 C -0.196 4.196 22 N -0.597 5.597 23 Si 0.772 3.228 24 H -0.203 1.203 25 H -0.218 1.218 26 H -0.140 1.140 27 C -0.031 4.031 28 N -0.227 5.227 29 N -0.143 5.143 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.121 0.879 33 H 0.197 0.803 34 H 0.096 0.904 35 H 0.123 0.877 36 H 0.109 0.891 37 H 0.161 0.839 38 H 0.189 0.811 39 H 0.127 0.873 40 H 0.078 0.922 41 H 0.151 0.849 42 H 0.139 0.861 43 H 0.067 0.933 44 H 0.086 0.914 45 H 0.045 0.955 46 H 0.072 0.928 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges -26.812 7.343 -17.518 32.858 hybrid contribution 1.268 0.045 0.162 1.279 sum -25.543 7.388 -17.356 31.753 Atomic orbital electron populations 1.20391 0.83330 1.04784 1.04392 1.23254 0.98890 0.90293 0.96086 1.21640 0.90295 1.01218 1.16869 1.22039 0.99024 0.83631 0.98393 1.20757 0.93195 0.98171 1.03834 1.45799 1.03785 1.04276 1.58138 1.18002 0.84886 0.88968 0.96765 1.21776 1.01705 0.93171 1.02616 1.21739 0.89961 1.00885 0.92604 1.20961 0.96924 0.95844 1.00142 1.20863 0.90115 1.00403 0.90849 1.60590 1.22445 1.13041 1.36360 1.22040 0.88978 1.00860 0.93458 1.19155 0.97981 0.81178 1.01687 0.86488 1.29787 0.91139 0.95004 0.90932 1.81050 1.11180 1.15304 1.11041 1.19591 0.92689 0.96776 0.95082 1.21443 1.11663 1.23355 1.00544 0.95579 1.26085 0.96913 0.99100 0.97526 1.70101 1.21679 1.43113 1.24782 0.85681 0.79942 0.78028 0.79133 1.20342 1.21831 1.14026 1.22874 0.95056 0.90228 0.94926 1.66939 0.99024 1.38789 1.17969 1.77362 0.84974 1.23911 1.28031 0.88903 0.90561 0.87854 0.80265 0.90389 0.87741 0.89103 0.83949 0.81142 0.87299 0.92172 0.84913 0.86111 0.93348 0.91383 0.95484 0.92751 0.80186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.72 10.44 71.24 0.74 0.03 16 2 C 0.08 1.60 7.21 43.13 0.31 1.91 16 3 C -0.27 -4.97 10.65 22.00 0.23 -4.74 16 4 C 0.09 2.01 6.89 41.26 0.28 2.29 16 5 C -0.10 -1.75 9.98 71.24 0.71 -1.04 16 6 N -0.34 -8.72 3.78 -180.43 -0.68 -9.41 16 7 C 0.34 8.32 7.36 132.76 0.98 9.30 16 8 C -0.17 -3.56 9.74 22.48 0.22 -3.35 16 9 C -0.03 -0.41 9.85 22.45 0.22 -0.19 16 10 C -0.14 -2.15 5.41 -19.76 -0.11 -2.26 16 11 C 0.11 1.39 5.83 85.55 0.50 1.89 16 12 N -0.69 -12.91 6.49 -517.92 -3.36 -16.27 16 13 C 0.08 1.53 5.12 86.30 0.44 1.97 16 14 C 0.02 0.67 2.42 -12.60 -0.03 0.64 16 15 H 0.12 3.64 8.14 -2.38 -0.02 3.62 16 16 C 0.25 9.29 12.98 89.45 1.16 10.45 16 17 N -0.51 -21.50 18.54 20.00 0.37 -21.13 16 18 C 0.00 -0.09 3.49 29.85 0.10 0.01 16 19 C -0.53 -28.16 9.15 25.60 0.23 -27.92 16 20 H 0.03 1.58 7.84 -2.91 -0.02 1.55 16 21 C 0.00 0.01 5.47 84.65 0.46 0.47 16 22 N -0.96 -58.87 13.96 21.45 0.30 -58.57 16 23 Si 0.95 40.45 27.47 68.60 1.88 42.33 16 24 H -0.28 -11.78 7.11 99.48 0.71 -11.08 16 25 H -0.29 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.22 -7.70 6.54 99.48 0.65 -7.05 16 27 C 0.13 2.29 10.85 84.66 0.92 3.21 16 28 N -0.51 -11.65 7.65 -192.80 -1.47 -13.13 16 29 N -0.32 -8.08 12.10 -47.34 -0.57 -8.65 16 30 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 31 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 32 H 0.10 0.58 8.14 -2.38 -0.02 0.56 16 33 H 0.18 2.08 8.06 -2.91 -0.02 2.06 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 36 H 0.09 1.80 5.85 -2.38 -0.01 1.78 16 37 H 0.14 2.92 7.91 -2.91 -0.02 2.90 16 38 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 39 H 0.11 1.06 8.09 -2.39 -0.02 1.04 16 40 H 0.06 0.66 8.09 -2.39 -0.02 0.64 16 41 H 0.33 7.19 7.80 -89.70 -0.70 6.49 16 42 H 0.12 1.87 8.14 -2.39 -0.02 1.85 16 43 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.07 2.27 7.20 -2.39 -0.02 2.25 16 45 H 0.03 1.01 7.57 -2.39 -0.02 0.99 16 46 H 0.26 15.24 8.31 -92.71 -0.77 14.47 16 47 H 0.18 2.42 8.06 -2.91 -0.02 2.40 16 Total: -1.00 -76.95 401.55 4.09 -72.86 By element: Atomic # 1 Polarization: 19.04 SS G_CDS: 0.24 Total: 19.27 kcal Atomic # 6 Polarization: -14.70 SS G_CDS: 7.39 Total: -7.31 kcal Atomic # 7 Polarization: -121.73 SS G_CDS: -5.42 Total: -127.15 kcal Atomic # 14 Polarization: 40.45 SS G_CDS: 1.88 Total: 42.33 kcal Total: -76.95 4.09 -72.86 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567678540.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 189.071 kcal (2) G-P(sol) polarization free energy of solvation -76.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 112.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.086 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.861 kcal (6) G-S(sol) free energy of system = (1) + (5) 116.210 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds