Wall clock time and date at job start Sat Apr 11 2020 05:45:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46996 * 2 1 4 4 O 1.42900 * 109.47235 * 240.00272 * 2 1 3 5 5 C 1.52994 * 109.47476 * 119.99806 * 2 1 3 6 6 N 1.46906 * 109.47514 * 179.33582 * 5 2 1 7 7 C 1.46902 * 110.99596 * 66.98828 * 6 5 2 8 8 C 1.52992 * 109.47296 * 57.83290 * 7 6 5 9 9 O 1.42904 * 109.47390 * 69.60731 * 8 7 6 10 10 C 1.46891 * 111.00042 * 190.94292 * 6 5 2 11 11 C 1.53007 * 109.47153 * 165.26749 * 10 6 5 12 12 H 1.09004 * 109.46594 * 307.07499 * 11 10 6 13 13 O 1.42902 * 109.46825 * 67.07059 * 11 10 6 14 14 C 1.52999 * 109.47326 * 187.07393 * 11 10 6 15 15 O 1.42901 * 109.47083 * 174.99810 * 14 11 10 16 16 C 1.35673 * 116.99903 * 179.97438 * 15 14 11 17 17 C 1.39310 * 119.81962 * 359.73470 * 16 15 14 18 18 C 1.36430 * 120.18794 * 179.75688 * 17 16 15 19 19 C 1.40838 * 119.80845 * 0.51047 * 18 17 16 20 20 C 1.41216 * 120.17833 * 179.71961 * 19 18 17 21 21 H 1.08006 * 119.99878 * 26.35741 * 20 19 18 22 22 C 1.39885 * 120.00237 * 206.35275 * 20 19 18 23 23 N 1.30883 * 119.99740 * 16.01606 * 22 20 19 24 24 Si 1.86801 * 120.00388 * 196.01872 * 22 20 19 25 25 H 1.48498 * 109.47521 * 89.99964 * 24 22 20 26 26 H 1.48505 * 109.47101 * 210.00031 * 24 22 20 27 27 H 1.48499 * 109.46771 * 329.99571 * 24 22 20 28 28 C 1.40824 * 119.64378 * 359.73883 * 19 18 17 29 29 C 1.36439 * 119.81311 * 0.02562 * 28 19 18 30 30 H 1.09002 * 109.47019 * 300.00025 * 1 2 3 31 31 H 1.08997 * 109.47491 * 60.00045 * 1 2 3 32 32 H 1.08999 * 109.47050 * 180.02562 * 1 2 3 33 33 H 0.96702 * 113.99600 * 299.99576 * 4 2 1 34 34 H 1.09000 * 109.47245 * 59.33321 * 5 2 1 35 35 H 1.09005 * 109.47046 * 299.33379 * 5 2 1 36 36 H 1.09004 * 109.46511 * 177.83259 * 7 6 5 37 37 H 1.08997 * 109.47236 * 297.82902 * 7 6 5 38 38 H 1.09002 * 109.47004 * 189.60642 * 8 7 6 39 39 H 1.09002 * 109.47133 * 309.60782 * 8 7 6 40 40 H 0.96692 * 114.00038 * 184.85158 * 9 8 7 41 41 H 1.09005 * 109.47312 * 285.26211 * 10 6 5 42 42 H 1.08999 * 109.47636 * 45.26701 * 10 6 5 43 43 H 0.96691 * 113.99934 * 60.00582 * 13 11 10 44 44 H 1.09002 * 109.46737 * 294.99901 * 14 11 10 45 45 H 1.08999 * 109.47341 * 54.99950 * 14 11 10 46 46 H 1.08003 * 119.90409 * 0.02562 * 17 16 15 47 47 H 1.07999 * 120.10161 * 180.24733 * 18 17 16 48 48 H 0.97003 * 119.99932 * 180.02562 * 23 22 20 49 49 H 1.08004 * 120.09844 * 179.97438 * 28 19 18 50 50 H 1.07997 * 119.91598 * 179.97438 * 29 28 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7212 1.2492 6 7 3.5090 -0.7351 1.2412 7 6 4.0491 0.6218 1.3999 8 6 3.5278 1.2290 2.7037 9 8 4.1227 0.5551 3.8145 10 6 4.0326 -1.6347 2.2777 11 6 5.5139 -1.9112 2.0122 12 1 5.6400 -2.2619 0.9879 13 8 6.2639 -0.7094 2.2001 14 6 6.0148 -2.9821 2.9834 15 8 7.3641 -3.3243 2.6604 16 6 7.9621 -4.2665 3.4320 17 6 7.2599 -4.8465 4.4862 18 6 7.8522 -5.7983 5.2637 19 6 9.1811 -6.1863 5.0049 20 6 9.8038 -7.1664 5.8085 21 1 9.2055 -7.9092 6.3151 22 6 11.1957 -7.1753 5.9483 23 7 11.8941 -6.1217 5.6090 24 14 12.0574 -8.6908 6.6191 25 1 12.4132 -9.5956 5.4967 26 1 13.2922 -8.2817 7.3356 27 1 11.1520 -9.3998 7.5586 28 6 9.8857 -5.5913 3.9406 29 6 9.2771 -4.6445 3.1694 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.7210 -1.5952 -1.2329 34 1 1.6670 -1.7453 1.2553 35 1 1.6865 -0.2004 2.1392 36 1 5.1379 0.5782 1.4291 37 1 3.7327 1.2394 0.5593 38 1 3.7858 2.2874 2.7403 39 1 2.4444 1.1174 2.7489 40 1 3.7825 0.8378 4.6743 41 1 3.9200 -1.1667 3.2557 42 1 3.4786 -2.5732 2.2580 43 1 6.1979 -0.3399 3.0912 44 1 5.9713 -2.5975 4.0023 45 1 5.3859 -3.8687 2.9026 46 1 6.2422 -4.5449 4.6857 47 1 7.3052 -6.2498 6.0781 48 1 12.8593 -6.1279 5.7056 49 1 10.9052 -5.8831 3.7357 50 1 9.8160 -4.1868 2.3531 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000589273238.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:54 Heat of formation + Delta-G solvation = -155.995510 kcal Electronic energy + Delta-G solvation = -29814.978294 eV Core-core repulsion = 25614.844379 eV Total energy + Delta-G solvation = -4200.133915 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -39.85849 -38.76440 -37.60444 -36.91451 -35.98414 -35.12817 -33.25293 -31.65223 -30.93857 -29.73356 -29.05149 -28.65121 -26.71247 -24.87658 -24.23159 -22.97155 -21.64698 -20.66582 -20.53828 -20.36412 -17.98887 -17.31467 -17.20370 -16.96325 -16.68799 -16.28827 -15.88370 -15.53976 -15.24523 -15.16777 -14.72663 -14.22067 -14.06508 -13.90035 -13.76610 -13.36845 -13.25656 -12.91679 -12.69992 -12.45692 -12.43668 -12.19360 -12.11829 -12.07078 -11.96236 -11.75192 -11.36597 -11.30200 -11.11636 -11.03601 -10.89863 -10.69885 -10.51674 -10.41937 -10.13564 -9.89101 -9.76775 -9.50302 -9.26021 -9.00104 -8.26434 -7.59677 -6.95595 -6.66254 -4.21767 2.82134 2.99353 3.11367 3.14594 3.24891 3.43140 3.90130 3.98937 4.08880 4.27911 4.38504 4.61116 4.67509 4.69852 4.73589 4.78757 4.86788 5.00855 5.11265 5.12398 5.24971 5.30651 5.33769 5.38218 5.50784 5.57753 5.62568 5.69479 5.72913 5.74847 5.82613 6.11545 6.13213 6.26319 6.33225 6.78169 6.89958 6.90968 7.02195 7.16071 7.22153 7.23542 7.46104 7.51408 7.60769 7.83728 7.89569 8.05265 8.25229 8.51360 8.70823 8.94720 9.03647 10.28596 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.026905 B = 0.001896 C = 0.001868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.435463 B =14761.489307 C =14986.579903 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.107 3.893 3 H 0.094 0.906 4 O -0.549 6.549 5 C 0.013 3.987 6 N -0.513 5.513 7 C 0.028 3.972 8 C 0.035 3.965 9 O -0.562 6.562 10 C 0.008 3.992 11 C 0.122 3.878 12 H 0.107 0.893 13 O -0.546 6.546 14 C 0.042 3.958 15 O -0.317 6.317 16 C -0.003 4.003 17 C -0.170 4.170 18 C -0.196 4.196 19 C 0.086 3.914 20 C -0.465 4.465 21 H 0.075 0.925 22 C 0.074 3.926 23 N -0.802 5.802 24 Si 0.908 3.092 25 H -0.269 1.269 26 H -0.279 1.279 27 H -0.264 1.264 28 C -0.130 4.130 29 C -0.121 4.121 30 H 0.062 0.938 31 H 0.065 0.935 32 H 0.059 0.941 33 H 0.373 0.627 34 H 0.075 0.925 35 H 0.044 0.956 36 H 0.126 0.874 37 H 0.083 0.917 38 H 0.048 0.952 39 H 0.044 0.956 40 H 0.373 0.627 41 H 0.085 0.915 42 H 0.071 0.929 43 H 0.374 0.626 44 H 0.051 0.949 45 H 0.054 0.946 46 H 0.092 0.908 47 H 0.094 0.906 48 H 0.279 0.721 49 H 0.125 0.875 50 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.405 13.600 -5.944 25.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.244 4.244 2 C 0.047 3.953 3 H 0.112 0.888 4 O -0.353 6.353 5 C -0.115 4.115 6 N -0.235 5.235 7 C -0.100 4.100 8 C -0.044 4.044 9 O -0.369 6.369 10 C -0.120 4.120 11 C 0.063 3.937 12 H 0.125 0.875 13 O -0.353 6.353 14 C -0.036 4.036 15 O -0.233 6.233 16 C -0.046 4.046 17 C -0.189 4.189 18 C -0.216 4.216 19 C 0.084 3.916 20 C -0.495 4.495 21 H 0.094 0.906 22 C -0.143 4.143 23 N -0.429 5.429 24 Si 0.733 3.267 25 H -0.194 1.194 26 H -0.204 1.204 27 H -0.188 1.188 28 C -0.149 4.149 29 C -0.140 4.140 30 H 0.081 0.919 31 H 0.084 0.916 32 H 0.078 0.922 33 H 0.219 0.781 34 H 0.093 0.907 35 H 0.062 0.938 36 H 0.143 0.857 37 H 0.101 0.899 38 H 0.066 0.934 39 H 0.062 0.938 40 H 0.221 0.779 41 H 0.103 0.897 42 H 0.090 0.910 43 H 0.222 0.778 44 H 0.069 0.931 45 H 0.072 0.928 46 H 0.110 0.890 47 H 0.112 0.888 48 H 0.090 0.910 49 H 0.143 0.857 50 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -19.170 13.779 -7.769 24.854 hybrid contribution -0.966 -0.558 2.640 2.866 sum -20.136 13.221 -5.129 24.628 Atomic orbital electron populations 1.22503 0.96543 1.02662 1.02685 1.21860 0.91934 0.96721 0.84778 0.88826 1.86614 1.77262 1.28742 1.42714 1.22996 0.89458 1.01308 0.97745 1.61999 1.05351 1.08812 1.47370 1.22908 1.05065 0.88878 0.93148 1.23064 0.96615 0.96226 0.88468 1.86515 1.68029 1.65298 1.17025 1.23126 0.95872 0.97060 0.95938 1.21788 0.88248 0.83598 1.00086 0.87538 1.86496 1.72423 1.40131 1.36201 1.23090 0.84406 0.97713 0.98361 1.85896 1.25628 1.56613 1.55138 1.18652 0.93754 0.96134 0.96093 1.20396 0.98387 1.01699 0.98447 1.20570 0.97524 1.01817 1.01686 1.17596 0.90889 0.91938 0.91160 1.19440 0.91429 1.12389 1.26277 0.90648 1.25862 0.97911 0.96485 0.93993 1.69830 1.08235 1.27204 1.37627 0.86320 0.78848 0.82002 0.79531 1.19385 1.20429 1.18799 1.20977 1.00498 0.98417 0.95028 1.19860 0.92002 1.00727 1.01440 0.91860 0.91571 0.92187 0.78053 0.90679 0.93835 0.85680 0.89903 0.93377 0.93819 0.77917 0.89720 0.91040 0.77769 0.93086 0.92783 0.88974 0.88816 0.91000 0.85720 0.88406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -0.97 9.53 37.16 0.35 -0.61 16 2 C 0.11 0.76 3.47 -26.74 -0.09 0.67 16 3 H 0.09 0.70 6.66 -51.93 -0.35 0.35 16 4 O -0.55 -5.04 13.19 -35.23 -0.46 -5.50 16 5 C 0.01 0.10 4.38 -3.82 -0.02 0.08 16 6 N -0.51 -5.05 4.52 -234.63 -1.06 -6.11 16 7 C 0.03 0.26 5.34 -3.83 -0.02 0.24 16 8 C 0.04 0.25 6.89 37.15 0.26 0.51 16 9 O -0.56 -4.19 8.95 -35.23 -0.32 -4.51 16 10 C 0.01 0.08 4.49 -3.83 -0.02 0.06 16 11 C 0.12 1.69 3.42 -26.73 -0.09 1.60 16 12 H 0.11 1.64 8.14 -51.93 -0.42 1.22 16 13 O -0.55 -7.95 10.09 -41.82 -0.42 -8.37 16 14 C 0.04 0.68 4.36 37.16 0.16 0.84 16 15 O -0.32 -6.80 10.09 -23.56 -0.24 -7.04 16 16 C 0.00 -0.07 6.71 -38.78 -0.26 -0.33 16 17 C -0.17 -3.94 8.96 -39.83 -0.36 -4.30 16 18 C -0.20 -4.91 9.74 -39.25 -0.38 -5.29 16 19 C 0.09 2.35 5.56 -106.81 -0.59 1.76 16 20 C -0.47 -12.54 9.04 -37.84 -0.34 -12.89 16 21 H 0.08 1.95 7.90 -52.48 -0.41 1.54 16 22 C 0.07 1.89 5.16 -17.34 -0.09 1.80 16 23 N -0.80 -21.21 10.97 55.54 0.61 -20.60 16 24 Si 0.91 19.03 29.59 -169.99 -5.03 14.00 16 25 H -0.27 -5.56 7.11 56.52 0.40 -5.16 16 26 H -0.28 -5.73 7.11 56.52 0.40 -5.32 16 27 H -0.26 -5.46 7.11 56.52 0.40 -5.06 16 28 C -0.13 -3.48 8.63 -39.25 -0.34 -3.81 16 29 C -0.12 -3.05 9.92 -39.83 -0.40 -3.44 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.37 2.32 9.05 45.56 0.41 2.74 16 34 H 0.07 0.54 7.85 -51.93 -0.41 0.14 16 35 H 0.04 0.30 5.71 -51.93 -0.30 0.00 16 36 H 0.13 1.47 4.98 -51.93 -0.26 1.22 16 37 H 0.08 0.74 6.62 -51.93 -0.34 0.40 16 38 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 39 H 0.04 0.27 5.74 -51.93 -0.30 -0.03 16 40 H 0.37 1.44 9.12 45.57 0.42 1.85 16 41 H 0.09 0.88 4.69 -51.92 -0.24 0.63 16 42 H 0.07 0.73 7.82 -51.93 -0.41 0.33 16 43 H 0.37 4.79 7.58 45.56 0.35 5.14 16 44 H 0.05 0.81 7.63 -51.93 -0.40 0.41 16 45 H 0.05 0.84 7.66 -51.93 -0.40 0.44 16 46 H 0.09 1.84 6.27 -52.48 -0.33 1.51 16 47 H 0.09 2.19 8.06 -52.49 -0.42 1.76 16 48 H 0.28 6.73 8.30 -40.82 -0.34 6.39 16 49 H 0.13 3.41 6.22 -52.48 -0.33 3.08 16 50 H 0.10 2.29 8.06 -52.49 -0.42 1.87 16 LS Contribution 390.94 15.07 5.89 5.89 Total: -1.00 -31.75 390.94 -8.64 -40.39 By element: Atomic # 1 Polarization: 20.36 SS G_CDS: -5.38 Total: 14.97 kcal Atomic # 6 Polarization: -20.90 SS G_CDS: -2.23 Total: -23.12 kcal Atomic # 7 Polarization: -26.26 SS G_CDS: -0.45 Total: -26.71 kcal Atomic # 8 Polarization: -23.98 SS G_CDS: -1.44 Total: -25.42 kcal Atomic # 14 Polarization: 19.03 SS G_CDS: -5.03 Total: 14.00 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -31.75 -8.64 -40.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000589273238.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.610 kcal (2) G-P(sol) polarization free energy of solvation -31.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.640 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.386 kcal (6) G-S(sol) free energy of system = (1) + (5) -155.996 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds