Wall clock time and date at job start Sat Apr 11 2020 05:46:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00689 * 2 1 4 4 O 1.20829 * 119.99480 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00409 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47310 * 174.32070 * 5 3 2 7 7 C 1.52996 * 110.01883 * 299.79023 * 6 5 3 8 8 C 1.50696 * 109.47053 * 297.91041 * 7 6 5 9 9 O 1.21286 * 120.00378 * 354.14966 * 8 7 6 10 10 N 1.34783 * 120.00322 * 174.15270 * 8 7 6 11 11 C 1.47426 * 125.64384 * 359.96879 * 10 8 7 12 12 C 1.54908 * 104.83046 * 204.15254 * 11 10 8 13 13 C 1.55153 * 101.58164 * 322.99220 * 12 11 10 14 14 O 1.42904 * 110.72106 * 276.96203 * 13 12 11 15 15 C 1.50706 * 110.72071 * 153.86833 * 13 12 11 16 16 H 1.07997 * 119.99960 * 241.45113 * 15 13 12 17 17 C 1.37869 * 120.00030 * 61.45126 * 15 13 12 18 18 N 1.31520 * 120.00222 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00059 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46924 * 60.00114 * 19 17 15 21 21 H 1.48500 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46860 * 300.00051 * 19 17 15 23 23 C 1.47015 * 125.64999 * 179.97438 * 10 8 7 24 24 C 1.54267 * 110.07067 * 61.20989 * 6 5 3 25 25 C 1.54885 * 104.19848 * 95.69659 * 24 6 5 26 26 C 1.54893 * 102.74627 * 37.94324 * 25 24 6 27 27 C 1.53875 * 110.03285 * 178.39594 * 6 5 3 28 28 H 1.08992 * 109.47658 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46804 * 300.00452 * 1 2 3 30 30 H 1.09005 * 109.46891 * 60.00018 * 1 2 3 31 31 H 1.08995 * 109.47336 * 54.32070 * 5 3 2 32 32 H 1.09001 * 109.46946 * 294.32228 * 5 3 2 33 33 H 1.08995 * 109.47258 * 177.90714 * 7 6 5 34 34 H 1.09003 * 109.46905 * 57.90568 * 7 6 5 35 35 H 1.09001 * 110.36210 * 85.31390 * 11 10 8 36 36 H 1.09002 * 110.37105 * 322.99082 * 11 10 8 37 37 H 1.09003 * 111.00075 * 204.91749 * 12 11 10 38 38 H 1.08993 * 111.00844 * 81.06894 * 12 11 10 39 39 H 0.96700 * 114.00104 * 298.54462 * 14 13 12 40 40 H 0.97001 * 119.99699 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.88707 * 59.50134 * 23 10 8 42 42 H 1.08998 * 109.88351 * 298.33148 * 23 10 8 43 43 H 1.09003 * 110.48284 * 214.37306 * 24 6 5 44 44 H 1.09003 * 110.48990 * 337.01507 * 24 6 5 45 45 H 1.08996 * 110.75893 * 279.62599 * 25 24 6 46 46 H 1.09001 * 110.91395 * 156.32656 * 25 24 6 47 47 H 1.09004 * 110.48558 * 203.38185 * 26 25 24 48 48 H 1.09001 * 110.48816 * 80.73548 * 26 25 24 49 49 H 1.09003 * 110.03386 * 359.95582 * 27 6 5 50 50 H 1.09004 * 110.03195 * 121.38220 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0007 2.7348 -0.1423 7 6 3.4716 3.3124 -1.4565 8 6 4.0613 2.5491 -2.6142 9 8 4.9089 1.7047 -2.4152 10 7 3.6470 2.8047 -3.8711 11 6 2.6284 3.7992 -4.2543 12 6 2.0775 3.2990 -5.6130 13 6 3.3593 2.7338 -6.2799 14 8 4.1081 3.7793 -6.9031 15 6 3.0116 1.6609 -7.2795 16 1 3.3774 0.6543 -7.1404 17 6 2.2266 1.9644 -8.3714 18 7 1.7815 3.1903 -8.5411 19 14 1.7950 0.6343 -9.6101 20 1 1.0536 -0.4562 -8.9272 21 1 0.9474 1.2134 -10.6831 22 1 3.0415 0.0886 -10.2048 23 6 4.1359 2.1380 -5.0867 24 6 3.4748 3.5625 1.0486 25 6 4.6605 3.5906 2.0448 26 6 5.8890 3.7191 1.1103 27 6 5.5357 2.8343 -0.1029 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9609 0.6950 -0.8339 32 1 3.9509 0.8712 0.9373 33 1 3.7542 4.3624 -1.5318 34 1 2.3852 3.2260 -1.4800 35 1 3.0831 4.7832 -4.3684 36 1 1.8318 3.8322 -3.5110 37 1 1.6654 4.1236 -6.1949 38 1 1.3341 2.5152 -5.4686 39 1 3.6323 4.2362 -7.6102 40 1 1.2295 3.4038 -9.3096 41 1 3.9500 1.0659 -5.0219 42 1 5.2029 2.3246 -5.2083 43 1 3.2216 4.5732 0.7283 44 1 2.6096 3.0760 1.4989 45 1 4.7059 2.6643 2.6174 46 1 4.5894 4.4511 2.7100 47 1 6.7858 3.3468 1.6057 48 1 6.0257 4.7551 0.8001 49 1 5.9713 1.8425 0.0187 50 1 5.9037 3.2941 -1.0202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000592849255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:09 Heat of formation + Delta-G solvation = -181.723702 kcal Electronic energy + Delta-G solvation = -31782.031736 eV Core-core repulsion = 27580.782163 eV Total energy + Delta-G solvation = -4201.249573 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.08849 -39.66540 -38.44928 -37.00178 -36.35435 -34.31130 -32.33997 -32.22857 -30.18613 -29.19903 -28.63179 -28.30206 -27.23637 -25.58889 -24.46475 -22.26795 -21.46360 -20.75372 -19.88705 -19.05481 -18.30331 -17.54866 -17.24372 -16.64729 -16.54544 -16.24533 -15.77484 -15.23114 -15.08522 -14.94898 -14.56063 -14.19870 -14.05221 -13.63718 -13.48580 -13.15210 -13.04169 -12.93628 -12.35980 -12.21885 -12.09775 -12.00234 -11.70110 -11.50613 -11.39510 -11.36356 -11.22127 -11.03589 -10.98694 -10.90014 -10.83328 -10.68027 -10.60701 -10.55693 -10.51723 -10.42268 -10.14077 -10.11233 -9.41689 -9.16104 -8.67882 -8.23921 -7.98577 -6.29857 -4.37505 2.18751 2.71555 3.09596 3.20866 3.25577 3.28899 3.57096 4.25738 4.46112 4.51374 4.60425 4.88641 4.96200 5.00592 5.07520 5.09301 5.11589 5.18076 5.35773 5.42636 5.47457 5.51494 5.55829 5.62661 5.64891 5.73638 5.79659 5.82942 5.90758 5.93243 5.97984 6.03183 6.04970 6.11815 6.23908 6.28778 6.37566 6.42313 6.45321 6.51228 6.69234 6.90750 6.97262 7.28646 7.34084 7.71748 7.73570 8.01110 8.14165 8.63017 8.66983 9.28844 9.37872 10.77610 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003326 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.323540 B = 8416.681888 C = 9499.484116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.361 6.361 3 C 0.461 3.539 4 O -0.504 6.504 5 C -0.112 4.112 6 C -0.027 4.027 7 C -0.138 4.138 8 C 0.519 3.481 9 O -0.554 6.554 10 N -0.608 5.608 11 C 0.094 3.906 12 C -0.134 4.134 13 C 0.247 3.753 14 O -0.585 6.585 15 C -0.535 4.535 16 H 0.063 0.937 17 C 0.073 3.927 18 N -0.896 5.896 19 Si 0.902 3.098 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.274 1.274 23 C 0.123 3.877 24 C -0.112 4.112 25 C -0.127 4.127 26 C -0.128 4.128 27 C -0.100 4.100 28 H 0.099 0.901 29 H 0.060 0.940 30 H 0.064 0.936 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.092 0.908 34 H 0.105 0.895 35 H 0.062 0.938 36 H 0.060 0.940 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.382 0.618 40 H 0.268 0.732 41 H 0.071 0.929 42 H 0.060 0.940 43 H 0.069 0.931 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.062 0.938 48 H 0.063 0.937 49 H 0.071 0.929 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.445 0.244 18.722 18.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.278 6.278 3 C 0.305 3.695 4 O -0.393 6.393 5 C -0.149 4.149 6 C -0.027 4.027 7 C -0.177 4.177 8 C 0.308 3.692 9 O -0.434 6.434 10 N -0.340 5.340 11 C -0.029 4.029 12 C -0.173 4.173 13 C 0.207 3.793 14 O -0.394 6.394 15 C -0.574 4.574 16 H 0.081 0.919 17 C -0.130 4.130 18 N -0.535 5.535 19 Si 0.730 3.270 20 H -0.201 1.201 21 H -0.211 1.211 22 H -0.200 1.200 23 C 0.002 3.998 24 C -0.149 4.149 25 C -0.165 4.165 26 C -0.166 4.166 27 C -0.138 4.138 28 H 0.117 0.883 29 H 0.079 0.921 30 H 0.083 0.917 31 H 0.143 0.857 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.123 0.877 35 H 0.081 0.919 36 H 0.078 0.922 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.232 0.768 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.078 0.922 43 H 0.088 0.912 44 H 0.091 0.909 45 H 0.082 0.918 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.082 0.918 49 H 0.090 0.910 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 0.133 -0.002 19.192 19.193 hybrid contribution -1.137 -0.379 -1.275 1.750 sum -1.004 -0.381 17.917 17.950 Atomic orbital electron populations 1.23244 0.76559 1.03578 1.02502 1.86529 1.23330 1.33878 1.84054 1.24036 0.92511 0.81180 0.71775 1.90600 1.67394 1.35936 1.45328 1.21784 0.86740 0.99830 1.06559 1.20717 0.95918 0.92070 0.94009 1.22013 1.03330 1.00480 0.91903 1.20315 0.82308 0.83679 0.82937 1.90603 1.33304 1.35128 1.84364 1.48697 1.40320 1.38904 1.06064 1.22521 0.90005 0.91855 0.98517 1.23289 0.99955 1.01474 0.92537 1.19456 0.85613 0.85933 0.88329 1.86129 1.46534 1.51920 1.54829 1.21479 1.31908 0.95959 1.08032 0.91862 1.24980 0.94518 0.95905 0.97569 1.69689 1.35453 1.18499 1.29879 0.86480 0.78534 0.81560 0.80442 1.20079 1.21105 1.19973 1.22038 0.98565 0.96462 0.82780 1.22539 0.97627 1.00276 0.94489 1.22538 0.95219 1.01290 0.97433 1.22445 0.97680 1.00109 0.96371 1.22149 0.93035 1.00511 0.98075 0.88291 0.92076 0.91729 0.85676 0.87809 0.88943 0.87732 0.91941 0.92161 0.89394 0.91590 0.76790 0.92169 0.91123 0.92180 0.91195 0.90861 0.91825 0.91825 0.91894 0.91836 0.91045 0.91073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 101.05 1.07 1.41 16 2 O -0.36 -4.65 10.56 -39.25 -0.41 -5.07 16 3 C 0.46 6.21 7.09 36.00 0.26 6.46 16 4 O -0.50 -7.37 11.77 -18.75 -0.22 -7.59 16 5 C -0.11 -1.39 4.37 -27.89 -0.12 -1.52 16 6 C -0.03 -0.33 0.33 -153.39 -0.05 -0.38 16 7 C -0.14 -1.98 3.38 -27.89 -0.09 -2.07 16 8 C 0.52 9.33 6.96 -10.98 -0.08 9.25 16 9 O -0.55 -10.81 12.79 5.55 0.07 -10.74 16 10 N -0.61 -11.96 3.33 -170.52 -0.57 -12.53 16 11 C 0.09 1.73 6.68 -2.53 -0.02 1.71 16 12 C -0.13 -2.90 5.47 -24.59 -0.13 -3.03 16 13 C 0.25 5.93 0.85 -89.94 -0.08 5.86 16 14 O -0.59 -14.60 13.08 -35.23 -0.46 -15.07 16 15 C -0.54 -13.98 8.21 -34.44 -0.28 -14.27 16 16 H 0.06 1.66 7.57 -52.49 -0.40 1.26 16 17 C 0.07 1.87 5.28 -17.82 -0.09 1.77 16 18 N -0.90 -22.86 10.67 55.43 0.59 -22.27 16 19 Si 0.90 20.20 29.54 -169.99 -5.02 15.18 16 20 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 21 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 23 C 0.12 2.77 6.22 -3.07 -0.02 2.75 16 24 C -0.11 -1.21 5.14 -25.07 -0.13 -1.34 16 25 C -0.13 -1.16 6.91 -24.74 -0.17 -1.33 16 26 C -0.13 -1.26 6.83 -25.07 -0.17 -1.43 16 27 C -0.10 -1.22 4.65 -25.62 -0.12 -1.34 16 28 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 30 H 0.06 0.68 8.13 -51.93 -0.42 0.26 16 31 H 0.13 1.82 5.95 -51.93 -0.31 1.51 16 32 H 0.10 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.09 1.22 8.10 -51.93 -0.42 0.80 16 34 H 0.10 1.58 5.18 -51.93 -0.27 1.31 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.06 0.98 7.30 -51.93 -0.38 0.60 16 37 H 0.09 1.97 7.54 -51.93 -0.39 1.58 16 38 H 0.07 1.48 8.04 -51.93 -0.42 1.06 16 39 H 0.38 9.51 7.46 45.56 0.34 9.85 16 40 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 41 H 0.07 1.62 7.66 -51.93 -0.40 1.22 16 42 H 0.06 1.40 8.07 -51.93 -0.42 0.98 16 43 H 0.07 0.76 7.83 -51.93 -0.41 0.35 16 44 H 0.07 0.85 5.96 -51.93 -0.31 0.54 16 45 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 48 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 49 H 0.07 0.88 7.67 -51.93 -0.40 0.48 16 50 H 0.07 1.01 6.74 -51.93 -0.35 0.66 16 LS Contribution 384.61 15.07 5.80 5.80 Total: -1.00 -28.29 384.61 -7.93 -36.22 By element: Atomic # 1 Polarization: 21.02 SS G_CDS: -7.46 Total: 13.56 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -0.23 Total: 2.51 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.02 Total: -34.80 kcal Atomic # 8 Polarization: -37.44 SS G_CDS: -1.03 Total: -38.46 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -28.29 -7.93 -36.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -145.507 kcal (2) G-P(sol) polarization free energy of solvation -28.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.925 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.217 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.724 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds