Wall clock time and date at job start Sat Apr 11 2020 05:46:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34228 * 117.00689 * 2 1 4 4 O 1.20829 * 119.99480 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00409 * 179.97438 * 3 2 1 6 6 C 1.52998 * 109.47310 * 174.32070 * 5 3 2 7 7 C 1.52996 * 110.01883 * 299.79023 * 6 5 3 8 8 C 1.50696 * 109.47053 * 297.91041 * 7 6 5 9 9 O 1.21286 * 120.00378 * 354.14966 * 8 7 6 10 10 N 1.34783 * 120.00322 * 174.15270 * 8 7 6 11 11 C 1.47426 * 125.64384 * 359.96879 * 10 8 7 12 12 C 1.54908 * 104.83046 * 204.15254 * 11 10 8 13 13 C 1.55153 * 101.58164 * 322.99220 * 12 11 10 14 14 O 1.42904 * 110.72106 * 276.96203 * 13 12 11 15 15 C 1.50706 * 110.72071 * 153.86833 * 13 12 11 16 16 H 1.07997 * 119.99960 * 241.45113 * 15 13 12 17 17 C 1.37869 * 120.00030 * 61.45126 * 15 13 12 18 18 N 1.31520 * 120.00222 * 0.02562 * 17 15 13 19 19 Si 1.86803 * 120.00059 * 180.02562 * 17 15 13 20 20 H 1.48499 * 109.46924 * 60.00114 * 19 17 15 21 21 H 1.48500 * 109.47302 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46860 * 300.00051 * 19 17 15 23 23 C 1.47015 * 125.64999 * 179.97438 * 10 8 7 24 24 C 1.54267 * 110.07067 * 61.20989 * 6 5 3 25 25 C 1.54885 * 104.19848 * 95.69659 * 24 6 5 26 26 C 1.54893 * 102.74627 * 37.94324 * 25 24 6 27 27 C 1.53875 * 110.03285 * 178.39594 * 6 5 3 28 28 H 1.08992 * 109.47658 * 180.02562 * 1 2 3 29 29 H 1.09006 * 109.46804 * 300.00452 * 1 2 3 30 30 H 1.09005 * 109.46891 * 60.00018 * 1 2 3 31 31 H 1.08995 * 109.47336 * 54.32070 * 5 3 2 32 32 H 1.09001 * 109.46946 * 294.32228 * 5 3 2 33 33 H 1.08995 * 109.47258 * 177.90714 * 7 6 5 34 34 H 1.09003 * 109.46905 * 57.90568 * 7 6 5 35 35 H 1.09001 * 110.36210 * 85.31390 * 11 10 8 36 36 H 1.09002 * 110.37105 * 322.99082 * 11 10 8 37 37 H 1.09003 * 111.00075 * 204.91749 * 12 11 10 38 38 H 1.08993 * 111.00844 * 81.06894 * 12 11 10 39 39 H 0.96700 * 114.00104 * 298.54462 * 14 13 12 40 40 H 0.97001 * 119.99699 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.88707 * 59.50134 * 23 10 8 42 42 H 1.08998 * 109.88351 * 298.33148 * 23 10 8 43 43 H 1.09003 * 110.48284 * 214.37306 * 24 6 5 44 44 H 1.09003 * 110.48990 * 337.01507 * 24 6 5 45 45 H 1.08996 * 110.75893 * 279.62599 * 25 24 6 46 46 H 1.09001 * 110.91395 * 156.32656 * 25 24 6 47 47 H 1.09004 * 110.48558 * 203.38185 * 26 25 24 48 48 H 1.09001 * 110.48816 * 80.73548 * 26 25 24 49 49 H 1.09003 * 110.03386 * 359.95582 * 27 6 5 50 50 H 1.09004 * 110.03195 * 121.38220 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 0.0006 6 6 4.0007 2.7348 -0.1423 7 6 3.4716 3.3124 -1.4565 8 6 4.0613 2.5491 -2.6142 9 8 4.9089 1.7047 -2.4152 10 7 3.6470 2.8047 -3.8711 11 6 2.6284 3.7992 -4.2543 12 6 2.0775 3.2990 -5.6130 13 6 3.3593 2.7338 -6.2799 14 8 4.1081 3.7793 -6.9031 15 6 3.0116 1.6609 -7.2795 16 1 3.3774 0.6543 -7.1404 17 6 2.2266 1.9644 -8.3714 18 7 1.7815 3.1903 -8.5411 19 14 1.7950 0.6343 -9.6101 20 1 1.0536 -0.4562 -8.9272 21 1 0.9474 1.2134 -10.6831 22 1 3.0415 0.0886 -10.2048 23 6 4.1359 2.1380 -5.0867 24 6 3.4748 3.5625 1.0486 25 6 4.6605 3.5906 2.0448 26 6 5.8890 3.7191 1.1103 27 6 5.5357 2.8343 -0.1029 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5139 -0.8900 31 1 3.9609 0.6950 -0.8339 32 1 3.9509 0.8712 0.9373 33 1 3.7542 4.3624 -1.5318 34 1 2.3852 3.2260 -1.4800 35 1 3.0831 4.7832 -4.3684 36 1 1.8318 3.8322 -3.5110 37 1 1.6654 4.1236 -6.1949 38 1 1.3341 2.5152 -5.4686 39 1 3.6323 4.2362 -7.6102 40 1 1.2295 3.4038 -9.3096 41 1 3.9500 1.0659 -5.0219 42 1 5.2029 2.3246 -5.2083 43 1 3.2216 4.5732 0.7283 44 1 2.6096 3.0760 1.4989 45 1 4.7059 2.6643 2.6174 46 1 4.5894 4.4511 2.7100 47 1 6.7858 3.3468 1.6057 48 1 6.0257 4.7551 0.8001 49 1 5.9713 1.8425 0.0187 50 1 5.9037 3.2941 -1.0202 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000592849255.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:08 Heat of formation + Delta-G solvation = -198.311170 kcal Electronic energy + Delta-G solvation = -31782.751023 eV Core-core repulsion = 27580.782163 eV Total energy + Delta-G solvation = -4201.968860 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.17128 -40.99586 -39.75085 -38.49546 -37.35326 -36.08575 -34.22351 -33.32950 -31.72672 -30.54798 -29.87207 -29.50402 -28.28950 -27.03796 -25.82815 -23.87069 -22.40562 -21.78112 -21.47987 -20.44484 -19.51664 -19.15361 -18.54920 -17.99187 -17.64531 -17.37502 -17.00828 -16.91357 -16.35295 -16.31055 -15.95602 -15.78527 -15.37979 -14.79835 -14.65090 -14.55427 -14.13528 -13.95673 -13.90635 -13.74442 -13.44256 -13.25843 -13.16128 -13.01011 -12.88173 -12.75025 -12.68313 -12.48841 -12.30102 -12.17545 -12.03488 -11.94305 -11.87530 -11.74558 -11.59941 -11.40725 -11.33548 -11.27557 -11.15432 -10.71419 -10.55575 -10.16603 -9.60049 -8.25948 -6.40653 1.15006 1.41375 1.43049 1.50132 1.65006 1.80108 2.05494 2.38592 2.99215 3.44787 3.52247 3.61324 3.77496 3.92871 3.96942 4.01455 4.21413 4.27180 4.28917 4.31170 4.31224 4.36120 4.42293 4.50220 4.57889 4.58925 4.65318 4.66541 4.69030 4.75502 4.84726 4.89977 4.96431 5.01165 5.14088 5.15766 5.19368 5.24411 5.31311 5.38293 5.43317 5.46195 5.48922 5.54394 5.57661 5.74080 6.06452 6.58722 6.65569 6.72755 7.16445 7.29361 7.38502 8.79792 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.014346 B = 0.003326 C = 0.002947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.323540 B = 8416.681888 C = 9499.484116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.372 6.372 3 C 0.459 3.541 4 O -0.518 6.518 5 C -0.110 4.110 6 C -0.027 4.027 7 C -0.128 4.128 8 C 0.516 3.484 9 O -0.570 6.570 10 N -0.615 5.615 11 C 0.104 3.896 12 C -0.124 4.124 13 C 0.236 3.764 14 O -0.592 6.592 15 C -0.565 4.565 16 H 0.051 0.949 17 C 0.038 3.962 18 N -0.905 5.905 19 Si 0.958 3.042 20 H -0.274 1.274 21 H -0.277 1.277 22 H -0.277 1.277 23 C 0.132 3.868 24 C -0.106 4.106 25 C -0.120 4.120 26 C -0.123 4.123 27 C -0.099 4.099 28 H 0.126 0.874 29 H 0.071 0.929 30 H 0.054 0.946 31 H 0.102 0.898 32 H 0.129 0.871 33 H 0.108 0.892 34 H 0.102 0.898 35 H 0.073 0.927 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.053 0.947 39 H 0.380 0.620 40 H 0.272 0.728 41 H 0.057 0.943 42 H 0.044 0.956 43 H 0.071 0.929 44 H 0.068 0.932 45 H 0.073 0.927 46 H 0.079 0.921 47 H 0.074 0.926 48 H 0.066 0.934 49 H 0.065 0.935 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.070 0.611 20.546 20.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.289 6.289 3 C 0.304 3.696 4 O -0.408 6.408 5 C -0.147 4.147 6 C -0.027 4.027 7 C -0.167 4.167 8 C 0.307 3.693 9 O -0.451 6.451 10 N -0.348 5.348 11 C -0.018 4.018 12 C -0.163 4.163 13 C 0.196 3.804 14 O -0.401 6.401 15 C -0.603 4.603 16 H 0.069 0.931 17 C -0.163 4.163 18 N -0.543 5.543 19 Si 0.783 3.217 20 H -0.199 1.199 21 H -0.202 1.202 22 H -0.202 1.202 23 C 0.009 3.991 24 C -0.144 4.144 25 C -0.157 4.157 26 C -0.161 4.161 27 C -0.136 4.136 28 H 0.144 0.856 29 H 0.090 0.910 30 H 0.073 0.927 31 H 0.120 0.880 32 H 0.147 0.853 33 H 0.126 0.874 34 H 0.120 0.880 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.098 0.902 38 H 0.071 0.929 39 H 0.229 0.771 40 H 0.081 0.919 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.090 0.910 44 H 0.087 0.913 45 H 0.091 0.909 46 H 0.098 0.902 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.084 0.916 50 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -0.497 0.368 21.038 21.047 hybrid contribution -0.933 -0.544 -1.861 2.152 sum -1.430 -0.176 19.176 19.230 Atomic orbital electron populations 1.23502 0.75009 1.05446 1.02506 1.86518 1.24956 1.33610 1.83797 1.24177 0.92812 0.81188 0.71398 1.90585 1.67754 1.36311 1.46103 1.21773 0.86343 0.99714 1.06885 1.20775 0.96076 0.92258 0.93610 1.22037 1.02786 1.00804 0.91077 1.21048 0.81841 0.83453 0.83000 1.90596 1.34081 1.35888 1.84553 1.48779 1.40897 1.39259 1.05837 1.22474 0.90347 0.91620 0.97341 1.23060 0.98510 1.00600 0.94103 1.19577 0.86832 0.85558 0.88463 1.86115 1.46989 1.52107 1.54844 1.21700 1.32979 0.96097 1.09552 0.93097 1.25581 0.94229 0.97786 0.98747 1.69746 1.35143 1.19308 1.30139 0.85618 0.78115 0.79385 0.78542 1.19884 1.20183 1.20242 1.21727 0.97494 0.95930 0.83960 1.22478 0.98107 0.99788 0.93988 1.22524 0.93611 1.02560 0.97042 1.22417 0.98577 0.99699 0.95365 1.22094 0.92754 1.00577 0.98224 0.85619 0.91048 0.92732 0.87983 0.85297 0.87387 0.87981 0.90920 0.89381 0.90239 0.92855 0.77068 0.91874 0.92454 0.93780 0.91030 0.91348 0.90862 0.90245 0.90695 0.91523 0.91618 0.93494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 10.56 113.37 1.20 1.72 16 2 O -0.37 -9.20 10.56 -51.40 -0.54 -9.74 16 3 C 0.46 11.87 7.09 71.23 0.50 12.38 16 4 O -0.52 -14.44 11.77 21.95 0.26 -14.18 16 5 C -0.11 -2.63 4.37 29.85 0.13 -2.50 16 6 C -0.03 -0.62 0.33 -51.46 -0.02 -0.64 16 7 C -0.13 -3.51 3.38 29.85 0.10 -3.41 16 8 C 0.52 18.49 6.96 87.65 0.61 19.10 16 9 O -0.57 -22.59 12.79 -3.05 -0.04 -22.63 16 10 N -0.61 -24.26 3.33 -811.79 -2.70 -26.96 16 11 C 0.10 3.76 6.68 86.85 0.58 4.34 16 12 C -0.12 -5.40 5.47 31.98 0.17 -5.22 16 13 C 0.24 11.57 0.85 -10.35 -0.01 11.56 16 14 O -0.59 -30.08 13.08 -148.98 -1.95 -32.03 16 15 C -0.57 -30.19 8.21 25.60 0.21 -29.98 16 16 H 0.05 2.76 7.57 -2.91 -0.02 2.74 16 17 C 0.04 1.97 5.28 84.65 0.45 2.41 16 18 N -0.90 -46.17 10.67 21.45 0.23 -45.94 16 19 Si 0.96 41.45 29.54 68.60 2.03 43.47 16 20 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 21 H -0.28 -11.52 7.11 99.48 0.71 -10.82 16 22 H -0.28 -12.04 7.11 99.48 0.71 -11.33 16 23 C 0.13 6.11 6.22 86.73 0.54 6.65 16 24 C -0.11 -2.04 5.14 31.67 0.16 -1.88 16 25 C -0.12 -1.81 6.91 31.89 0.22 -1.59 16 26 C -0.12 -2.10 6.83 31.67 0.22 -1.88 16 27 C -0.10 -2.29 4.65 31.32 0.15 -2.15 16 28 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.07 1.16 8.13 -2.38 -0.02 1.14 16 30 H 0.05 1.11 8.13 -2.38 -0.02 1.09 16 31 H 0.10 2.98 5.95 -2.39 -0.01 2.96 16 32 H 0.13 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.11 2.65 8.10 -2.39 -0.02 2.63 16 34 H 0.10 2.93 5.18 -2.39 -0.01 2.92 16 35 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 36 H 0.09 2.70 7.30 -2.39 -0.02 2.68 16 37 H 0.08 3.57 7.54 -2.39 -0.02 3.56 16 38 H 0.05 2.42 8.04 -2.39 -0.02 2.40 16 39 H 0.38 19.23 7.46 -74.06 -0.55 18.68 16 40 H 0.27 13.23 8.31 -92.71 -0.77 12.46 16 41 H 0.06 2.75 7.66 -2.38 -0.02 2.74 16 42 H 0.04 2.13 8.07 -2.39 -0.02 2.11 16 43 H 0.07 1.36 7.83 -2.39 -0.02 1.34 16 44 H 0.07 1.42 5.96 -2.39 -0.01 1.40 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 47 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 49 H 0.07 1.58 7.67 -2.39 -0.02 1.56 16 50 H 0.05 1.31 6.74 -2.38 -0.02 1.29 16 Total: -1.00 -60.94 384.61 2.89 -58.05 By element: Atomic # 1 Polarization: 40.66 SS G_CDS: 0.40 Total: 41.06 kcal Atomic # 6 Polarization: 3.69 SS G_CDS: 5.21 Total: 8.91 kcal Atomic # 7 Polarization: -70.43 SS G_CDS: -2.47 Total: -72.90 kcal Atomic # 8 Polarization: -76.31 SS G_CDS: -2.27 Total: -78.58 kcal Atomic # 14 Polarization: 41.45 SS G_CDS: 2.03 Total: 43.47 kcal Total: -60.94 2.89 -58.05 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000592849255.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -140.263 kcal (2) G-P(sol) polarization free energy of solvation -60.939 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -201.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -198.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds