Wall clock time and date at job start Sat Apr 11 2020 05:46:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 120.00403 * 2 1 4 4 H 1.48497 * 109.46848 * 180.02562 * 3 2 1 5 5 H 1.48500 * 109.46850 * 299.99945 * 3 2 1 6 6 H 1.48492 * 109.46951 * 60.00369 * 3 2 1 7 7 C 1.38815 * 119.99654 * 180.02562 * 2 1 3 8 8 H 1.08007 * 119.99901 * 163.52798 * 7 2 1 9 9 N 1.36937 * 120.00162 * 343.53055 * 7 2 1 10 10 C 1.46921 * 120.62773 * 329.38616 * 9 7 2 11 11 C 1.53197 * 108.77428 * 233.62706 * 10 9 7 12 12 C 1.53038 * 109.31531 * 305.36765 * 11 10 9 13 13 N 1.46500 * 109.46042 * 181.38475 * 12 11 10 14 14 C 1.31246 * 120.00195 * 114.76519 * 13 12 11 15 15 C 1.41080 * 120.04259 * 185.90060 * 14 13 12 16 16 C 1.37723 * 119.93463 * 179.97438 * 15 14 13 17 17 C 1.40437 * 120.00896 * 359.97438 * 16 15 14 18 18 N 1.32150 * 119.96438 * 180.02562 * 17 16 15 19 19 C 1.36138 * 120.00575 * 185.33644 * 18 17 16 20 20 C 1.40003 * 120.17995 * 265.90953 * 19 18 17 21 21 C 1.37843 * 119.81057 * 180.02562 * 20 19 18 22 22 C 1.38449 * 120.18198 * 359.97438 * 21 20 19 23 23 C 1.38446 * 120.37475 * 0.27583 * 22 21 20 24 24 C 1.37831 * 120.18687 * 359.44416 * 23 22 21 25 25 N 1.38143 * 120.07559 * 0.29612 * 17 16 15 26 26 H 0.97001 * 119.96585 * 179.72077 * 25 17 16 27 27 N 1.38149 * 120.03734 * 5.87582 * 14 13 12 28 28 H 0.97001 * 120.00413 * 0.02562 * 27 14 13 29 29 C 1.53036 * 109.53709 * 61.36240 * 12 11 10 30 30 C 1.46923 * 120.63438 * 149.40574 * 9 7 2 31 31 H 0.97005 * 119.99588 * 359.97438 * 1 2 3 32 32 H 1.09002 * 109.58865 * 113.84420 * 10 9 7 33 33 H 1.08996 * 109.70683 * 353.48223 * 10 9 7 34 34 H 1.09005 * 109.50017 * 185.41093 * 11 10 9 35 35 H 1.09001 * 109.49409 * 65.32021 * 11 10 9 36 36 H 1.08999 * 109.45743 * 301.35420 * 12 11 10 37 37 H 1.08003 * 120.02622 * 359.95774 * 15 14 13 38 38 H 1.08001 * 120.00005 * 180.02562 * 16 15 14 39 39 H 1.08005 * 120.09612 * 359.97438 * 20 19 18 40 40 H 1.07994 * 119.90738 * 180.02562 * 21 20 19 41 41 H 1.07995 * 119.80676 * 179.97438 * 22 21 20 42 42 H 1.07996 * 119.90384 * 179.70432 * 23 22 21 43 43 H 1.08003 * 120.09671 * 180.25409 * 24 23 22 44 44 H 1.08999 * 109.49921 * 58.59064 * 29 12 11 45 45 H 1.08999 * 109.49871 * 178.68933 * 29 12 11 46 46 H 1.08998 * 109.58740 * 246.15777 * 30 9 7 47 47 H 1.09009 * 109.58550 * 6.43722 * 30 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7102 1.3462 -0.0006 5 1 1.8916 2.3964 -1.2125 6 1 1.8917 2.3963 1.2125 7 6 2.0102 -1.2022 -0.0005 8 1 3.0570 -1.2213 -0.2658 9 7 1.3676 -2.3639 0.3351 10 6 0.2515 -2.3528 1.2906 11 6 0.5460 -3.3624 2.4045 12 6 0.8288 -4.7325 1.7842 13 7 1.0783 -5.7080 2.8483 14 6 0.2475 -6.7075 3.0304 15 6 0.4165 -7.5752 4.1299 16 6 -0.4569 -8.6230 4.3192 17 6 -1.5150 -8.8268 3.4186 18 7 -2.3529 -9.8323 3.6013 19 6 -3.3121 -10.0967 2.6720 20 6 -4.5974 -9.5604 2.8149 21 6 -5.5629 -9.8334 1.8698 22 6 -5.2642 -10.6351 0.7812 23 6 -3.9972 -11.1736 0.6350 24 6 -3.0185 -10.9058 1.5679 25 7 -1.6776 -7.9808 2.3387 26 1 -2.4066 -8.1255 1.7153 27 7 -0.7940 -6.9110 2.1459 28 1 -0.9114 -6.3152 1.3895 29 6 2.0588 -4.6402 0.8784 30 6 1.7814 -3.6452 -0.2529 31 1 -0.4850 0.8401 0.0004 32 1 -0.6700 -2.6314 0.7793 33 1 0.1447 -1.3564 1.7194 34 1 -0.3160 -3.4342 3.0678 35 1 1.4163 -3.0337 2.9726 36 1 -0.0324 -5.0494 1.1958 37 1 1.2303 -7.4179 4.8224 38 1 -0.3288 -9.2876 5.1608 39 1 -4.8321 -8.9352 3.6638 40 1 -6.5547 -9.4203 1.9783 41 1 -6.0254 -10.8454 0.0445 42 1 -3.7739 -11.8018 -0.2146 43 1 -2.0294 -11.3233 1.4502 44 1 2.9148 -4.2995 1.4608 45 1 2.2735 -5.6215 0.4552 46 1 0.9846 -4.0291 -0.8900 47 1 2.6851 -3.5006 -0.8451 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000596124279.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:12 Heat of formation + Delta-G solvation = 168.296635 kcal Electronic energy + Delta-G solvation = -28275.320308 eV Core-core repulsion = 24461.143177 eV Total energy + Delta-G solvation = -3814.177131 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.66064 -39.31177 -37.88394 -36.32148 -34.29342 -33.71124 -32.42050 -31.17179 -30.70402 -29.93316 -29.17572 -28.29773 -25.88010 -24.61124 -23.09716 -22.75076 -22.15508 -21.53533 -21.21408 -19.43309 -18.85836 -18.07633 -17.33801 -16.83149 -16.65715 -16.14930 -15.59109 -15.22904 -14.84197 -14.71248 -14.56791 -13.97926 -13.68218 -13.59472 -13.53719 -13.26185 -13.18139 -13.02295 -12.68143 -12.30192 -12.09521 -11.94811 -11.50276 -11.37043 -11.31836 -11.07988 -10.96596 -10.86247 -10.76720 -10.39117 -10.28405 -10.06025 -9.73165 -9.60644 -9.32508 -9.24026 -8.56946 -8.47720 -8.35760 -7.63970 -6.68988 -5.83247 -3.27729 0.19690 1.01524 1.13991 1.71508 2.03502 3.15877 3.35089 3.43224 3.44730 3.45695 3.66301 4.05532 4.13381 4.46873 4.68728 4.72296 4.81230 4.90367 5.08774 5.16888 5.21767 5.36285 5.36711 5.42954 5.50272 5.57970 5.63945 5.70806 5.78146 5.79018 5.89307 6.03052 6.08924 6.18375 6.26217 6.28068 6.29184 6.43210 6.53537 6.58012 6.63375 6.66113 6.73885 6.88878 6.95487 7.28900 7.54478 7.55347 7.77729 7.83075 8.06775 8.42531 9.17427 9.80004 10.38103 11.25645 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002221 C = 0.002089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.019029 B =12604.129916 C =13399.656698 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.004 3.996 3 Si 0.902 3.098 4 H -0.277 1.277 5 H -0.290 1.290 6 H -0.288 1.288 7 C -0.253 4.253 8 H 0.065 0.935 9 N -0.591 5.591 10 C 0.175 3.825 11 C -0.125 4.125 12 C 0.089 3.911 13 N -0.541 5.541 14 C 0.388 3.612 15 C -0.035 4.035 16 C -0.106 4.106 17 C 0.457 3.543 18 N -0.565 5.565 19 C 0.115 3.885 20 C -0.146 4.146 21 C -0.102 4.102 22 C -0.143 4.143 23 C -0.102 4.102 24 C -0.147 4.147 25 N -0.530 5.530 26 H 0.425 0.575 27 N -0.553 5.553 28 H 0.429 0.571 29 C -0.117 4.117 30 C 0.146 3.854 31 H 0.253 0.747 32 H 0.015 0.985 33 H 0.086 0.914 34 H 0.044 0.956 35 H 0.066 0.934 36 H 0.029 0.971 37 H 0.166 0.834 38 H 0.165 0.835 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.120 0.880 42 H 0.121 0.879 43 H 0.121 0.879 44 H 0.069 0.931 45 H 0.046 0.954 46 H 0.014 0.986 47 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.630 -21.337 5.918 23.113 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.547 5.547 2 C -0.195 4.195 3 Si 0.732 3.268 4 H -0.202 1.202 5 H -0.217 1.217 6 H -0.215 1.215 7 C -0.383 4.383 8 H 0.083 0.917 9 N -0.313 5.313 10 C 0.048 3.952 11 C -0.165 4.165 12 C -0.021 4.021 13 N -0.270 5.270 14 C 0.116 3.884 15 C -0.061 4.061 16 C -0.131 4.131 17 C 0.192 3.808 18 N -0.294 5.294 19 C 0.015 3.985 20 C -0.167 4.167 21 C -0.120 4.120 22 C -0.162 4.162 23 C -0.120 4.120 24 C -0.168 4.168 25 N -0.263 5.263 26 H 0.268 0.732 27 N -0.296 5.296 28 H 0.275 0.725 29 C -0.157 4.157 30 C 0.019 3.981 31 H 0.063 0.937 32 H 0.034 0.966 33 H 0.104 0.896 34 H 0.063 0.937 35 H 0.085 0.915 36 H 0.047 0.953 37 H 0.183 0.817 38 H 0.182 0.818 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.138 0.862 42 H 0.139 0.861 43 H 0.139 0.861 44 H 0.088 0.912 45 H 0.065 0.935 46 H 0.032 0.968 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.063 -21.386 6.821 23.252 hybrid contribution -1.002 1.235 -1.769 2.379 sum -7.065 -20.151 5.051 21.943 Atomic orbital electron populations 1.70037 1.05336 1.25469 1.53828 1.25116 0.95293 0.98539 1.00537 0.86228 0.79468 0.83846 0.77274 1.20154 1.21714 1.21502 1.19208 0.92369 0.84634 1.42094 0.91696 1.44023 1.38156 1.02174 1.46988 1.20732 0.89037 0.97572 0.87833 1.22278 1.00680 0.93809 0.99732 1.21421 0.96875 0.92392 0.91382 1.73418 1.23861 1.04672 1.25030 1.19897 0.83867 0.94655 0.89960 1.21708 0.98862 0.90866 0.94646 1.21275 0.92911 0.99130 0.99812 1.19797 0.92094 0.84878 0.84059 1.69411 1.11935 1.20343 1.27716 1.18685 0.92827 0.96869 0.90147 1.21523 0.93230 1.01756 1.00195 1.21051 0.99000 0.97792 0.94182 1.21172 0.96943 0.99399 0.98675 1.21031 0.93192 0.99112 0.98695 1.21525 0.99928 1.01289 0.94077 1.44932 1.28748 1.23529 1.29076 0.73177 1.45035 1.27138 1.25777 1.31627 0.72459 1.22025 0.97162 0.98813 0.97667 1.20923 0.97786 0.86882 0.92526 0.93676 0.96646 0.89573 0.93689 0.91502 0.95282 0.81668 0.81785 0.86049 0.86016 0.86200 0.86053 0.86137 0.91205 0.93501 0.96841 0.92374 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.94 11.36 55.49 0.63 -25.31 16 2 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 3 Si 0.90 21.53 29.59 -169.99 -5.03 16.50 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 6 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.25 -6.90 9.56 -15.06 -0.14 -7.04 16 8 H 0.07 1.75 7.88 -52.48 -0.41 1.33 16 9 N -0.59 -14.61 2.98 -172.32 -0.51 -15.12 16 10 C 0.17 4.09 5.28 -3.71 -0.02 4.07 16 11 C -0.12 -2.41 5.68 -26.61 -0.15 -2.56 16 12 C 0.09 1.51 2.75 -67.89 -0.19 1.32 16 13 N -0.54 -8.08 10.14 -53.83 -0.55 -8.63 16 14 C 0.39 4.76 7.53 -156.08 -1.17 3.58 16 15 C -0.04 -0.32 10.02 -38.69 -0.39 -0.71 16 16 C -0.11 -0.90 9.99 -38.94 -0.39 -1.29 16 17 C 0.46 4.73 7.48 -155.57 -1.16 3.57 16 18 N -0.56 -6.41 10.32 -10.24 -0.11 -6.52 16 19 C 0.11 1.26 4.27 -84.63 -0.36 0.90 16 20 C -0.15 -1.49 10.01 -39.06 -0.39 -1.88 16 21 C -0.10 -0.89 10.03 -39.65 -0.40 -1.29 16 22 C -0.14 -1.20 10.04 -39.43 -0.40 -1.59 16 23 C -0.10 -0.88 10.03 -39.65 -0.40 -1.28 16 24 C -0.15 -1.48 10.01 -39.07 -0.39 -1.87 16 25 N -0.53 -5.43 6.67 31.18 0.21 -5.22 16 26 H 0.43 4.07 7.48 -182.60 -1.37 2.71 16 27 N -0.55 -6.30 6.68 31.16 0.21 -6.09 16 28 H 0.43 4.96 6.21 -182.60 -1.13 3.83 16 29 C -0.12 -2.06 5.68 -26.61 -0.15 -2.22 16 30 C 0.15 3.01 6.52 -3.71 -0.02 2.99 16 31 H 0.25 7.02 8.31 -40.82 -0.34 6.69 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.09 2.27 6.25 -51.93 -0.32 1.95 16 34 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 35 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 36 H 0.03 0.47 5.38 -51.93 -0.28 0.19 16 37 H 0.17 1.15 8.06 -52.48 -0.42 0.73 16 38 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 39 H 0.12 1.21 8.06 -52.48 -0.42 0.78 16 40 H 0.12 0.84 8.06 -52.49 -0.42 0.41 16 41 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 42 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 43 H 0.12 1.16 8.06 -52.48 -0.42 0.74 16 44 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 45 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 46 H 0.01 0.28 8.14 -51.93 -0.42 -0.14 16 47 H 0.06 1.18 7.93 -51.92 -0.41 0.77 16 LS Contribution 383.53 15.07 5.78 5.78 Total: -1.00 -31.10 383.53 -14.14 -45.24 By element: Atomic # 1 Polarization: 13.21 SS G_CDS: -8.56 Total: 4.65 kcal Atomic # 6 Polarization: 0.94 SS G_CDS: -6.21 Total: -5.28 kcal Atomic # 7 Polarization: -66.78 SS G_CDS: -0.12 Total: -66.90 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.03 Total: 16.50 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.10 -14.14 -45.24 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596124279.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.538 kcal (2) G-P(sol) polarization free energy of solvation -31.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -14.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.241 kcal (6) G-S(sol) free energy of system = (1) + (5) 168.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds