Wall clock time and date at job start Sat Apr 11 2020 05:44:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.42891 * 109.47253 * 2 1 4 4 C 1.42900 * 114.00531 * 179.97438 * 3 2 1 5 5 C 1.53881 * 113.59037 * 150.00129 * 4 3 2 6 6 C 1.53251 * 86.88367 * 89.61293 * 5 4 3 7 7 C 1.52463 * 128.58241 * 245.05517 * 6 5 4 8 8 C 1.52460 * 128.58821 * 165.11461 * 6 5 4 9 9 H 1.09004 * 117.51335 * 225.09130 * 8 6 5 10 10 C 1.50697 * 117.51249 * 10.14651 * 8 6 5 11 11 O 1.20828 * 120.00136 * 0.02562 * 10 8 6 12 12 O 1.34231 * 120.00499 * 180.02562 * 10 8 6 13 13 C 1.45200 * 117.00542 * 179.97438 * 12 10 8 14 14 C 1.50700 * 109.47207 * 180.02562 * 13 12 10 15 15 O 1.21283 * 119.99803 * 0.02562 * 14 13 12 16 16 N 1.34777 * 119.99675 * 180.28017 * 14 13 12 17 17 C 1.46496 * 120.00345 * 359.72090 * 16 14 13 18 18 C 1.53005 * 109.46942 * 90.00092 * 17 16 14 19 19 C 1.46497 * 119.99525 * 179.72583 * 16 14 13 20 20 C 1.50709 * 109.47273 * 89.99834 * 19 16 14 21 21 H 1.07999 * 119.99476 * 359.97438 * 20 19 16 22 22 C 1.37873 * 120.00210 * 179.97438 * 20 19 16 23 23 N 1.31517 * 119.99914 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 120.00074 * 179.97438 * 22 20 19 25 25 H 1.48503 * 109.46996 * 90.00193 * 24 22 20 26 26 H 1.48502 * 109.46931 * 210.00078 * 24 22 20 27 27 H 1.48498 * 109.47167 * 330.00145 * 24 22 20 28 28 C 1.53248 * 87.69424 * 25.08169 * 6 5 4 29 29 H 1.09001 * 109.47246 * 179.97438 * 1 2 3 30 30 H 1.08999 * 109.47315 * 299.99837 * 1 2 3 31 31 H 1.08999 * 109.47227 * 59.99604 * 1 2 3 32 32 H 1.09008 * 109.47172 * 240.00340 * 2 1 3 33 33 H 1.08999 * 109.47227 * 120.00396 * 2 1 3 34 34 H 1.09000 * 112.87783 * 18.83637 * 4 3 2 35 35 H 1.08997 * 113.64805 * 335.11252 * 5 4 3 36 36 H 1.09003 * 113.64469 * 204.10738 * 5 4 3 37 37 H 1.09002 * 117.51038 * 134.94779 * 7 6 5 38 38 H 1.08998 * 117.51304 * 349.84805 * 7 6 5 39 39 H 1.09009 * 109.46588 * 60.00092 * 13 12 10 40 40 H 1.08998 * 109.46989 * 300.00636 * 13 12 10 41 41 H 1.08995 * 109.47364 * 210.00706 * 17 16 14 42 42 H 1.09002 * 109.47090 * 330.00257 * 17 16 14 43 43 H 1.08997 * 109.46656 * 60.00331 * 18 17 16 44 44 H 1.09002 * 109.47083 * 180.02562 * 18 17 16 45 45 H 1.08998 * 109.46999 * 300.00039 * 18 17 16 46 46 H 1.09000 * 109.46889 * 209.99487 * 19 16 14 47 47 H 1.09001 * 109.47460 * 330.00097 * 19 16 14 48 48 H 0.97000 * 120.00447 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.64592 * 89.41604 * 28 6 5 50 50 H 1.09003 * 113.65242 * 220.41902 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3472 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.9485 2.7262 -0.7045 6 6 3.8498 3.4233 0.6567 7 6 2.9396 4.5739 1.0719 8 6 4.4604 4.7508 1.0917 9 1 4.9514 4.7846 2.0643 10 6 5.0743 5.6181 0.0231 11 8 5.0695 5.2524 -1.1285 12 8 5.6265 6.7970 0.3505 13 6 6.1995 7.5794 -0.7302 14 6 6.7686 8.8601 -0.1761 15 8 6.6986 9.0905 1.0125 16 7 7.3508 9.7517 -1.0023 17 6 7.4358 9.4731 -2.4381 18 6 6.1912 10.0221 -3.1386 19 6 7.8986 10.9994 -0.4646 20 6 9.3415 10.7911 -0.0824 21 1 9.8039 9.8256 -0.2255 22 6 10.0711 11.8329 0.4497 23 7 9.5077 13.0084 0.6244 24 14 11.8592 11.5744 0.9240 25 1 12.7296 11.8861 -0.2381 26 1 12.2055 12.4707 2.0563 27 1 12.0641 10.1610 1.3309 28 6 4.0019 2.0432 1.3052 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8899 32 1 1.8934 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 3.9286 0.5461 -0.3233 35 1 3.2602 3.1237 -1.4503 36 1 4.9694 2.6336 -1.0752 37 1 2.4298 4.4914 2.0318 38 1 2.3835 5.0847 0.2859 39 1 5.4247 7.8117 -1.4609 40 1 6.9931 7.0077 -1.2114 41 1 8.3248 9.9514 -2.8490 42 1 7.4966 8.3964 -2.5963 43 1 6.1305 11.0988 -2.9804 44 1 6.2542 9.8144 -4.2068 45 1 5.3022 9.5436 -2.7277 46 1 7.8324 11.7812 -1.2213 47 1 7.3289 11.2967 0.4159 48 1 10.0209 13.7413 0.9991 49 1 5.0376 1.7605 1.4939 50 1 3.3563 1.8931 2.1706 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869930957.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:07 Heat of formation + Delta-G solvation = -132.186367 kcal Electronic energy + Delta-G solvation = -29274.057620 eV Core-core repulsion = 25074.956147 eV Total energy + Delta-G solvation = -4199.101473 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.01298 -40.95278 -40.27365 -38.19370 -37.34028 -36.96109 -34.95064 -34.37404 -31.77586 -31.50410 -30.72966 -28.54532 -26.78233 -25.90457 -24.75015 -24.07918 -23.78572 -23.51778 -21.65629 -20.31313 -19.56607 -19.03192 -18.64834 -18.09207 -17.77390 -17.54788 -17.37723 -16.91674 -16.47821 -16.37584 -16.25577 -15.83787 -15.11930 -14.86313 -14.84184 -14.68645 -14.52172 -14.23442 -13.92949 -13.86221 -13.61474 -13.47955 -13.29831 -13.09157 -13.08486 -12.88894 -12.72654 -12.69224 -12.51982 -12.28664 -12.23775 -12.06949 -12.05240 -11.81010 -11.73042 -11.69906 -11.37027 -11.04681 -10.92598 -10.72668 -10.65076 -10.36197 -9.56442 -8.24107 -6.38838 0.96820 1.21406 1.36283 1.39428 1.49513 1.59715 2.29464 2.42596 2.57830 2.76439 3.05834 3.31727 3.41947 3.53058 3.61092 3.69105 3.81483 3.86323 3.95235 4.01029 4.13531 4.24248 4.28990 4.36131 4.45711 4.55377 4.55651 4.56939 4.74657 4.76423 4.80119 4.86273 4.91596 4.92602 4.94371 5.01125 5.06867 5.10046 5.13535 5.17751 5.24175 5.27905 5.32321 5.34225 5.52881 5.78346 6.02942 6.39530 6.53210 6.65856 6.70183 7.19563 7.35213 8.83308 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.022799 B = 0.001908 C = 0.001842 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.825958 B =14669.218416 C =15194.900972 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.386 6.386 4 C 0.070 3.930 5 C -0.093 4.093 6 C -0.116 4.116 7 C -0.104 4.104 8 C -0.169 4.169 9 H 0.147 0.853 10 C 0.491 3.509 11 O -0.519 6.519 12 O -0.349 6.349 13 C 0.063 3.937 14 C 0.499 3.501 15 O -0.578 6.578 16 N -0.594 5.594 17 C 0.094 3.906 18 C -0.163 4.163 19 C 0.263 3.737 20 C -0.547 4.547 21 H 0.054 0.946 22 C 0.009 3.991 23 N -0.926 5.926 24 Si 0.969 3.031 25 H -0.262 1.262 26 H -0.281 1.281 27 H -0.274 1.274 28 C -0.107 4.107 29 H 0.088 0.912 30 H 0.057 0.943 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.060 0.940 34 H 0.098 0.902 35 H 0.063 0.937 36 H 0.099 0.901 37 H 0.132 0.868 38 H 0.097 0.903 39 H 0.120 0.880 40 H 0.117 0.883 41 H 0.082 0.918 42 H 0.097 0.903 43 H 0.044 0.956 44 H 0.098 0.902 45 H 0.055 0.945 46 H 0.030 0.970 47 H -0.001 1.001 48 H 0.268 0.732 49 H 0.112 0.888 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.108 -27.273 -5.123 31.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.305 6.305 4 C 0.012 3.988 5 C -0.130 4.130 6 C -0.117 4.117 7 C -0.141 4.141 8 C -0.188 4.188 9 H 0.164 0.836 10 C 0.335 3.665 11 O -0.408 6.408 12 O -0.265 6.265 13 C -0.014 4.014 14 C 0.286 3.714 15 O -0.458 6.458 16 N -0.327 5.327 17 C -0.028 4.028 18 C -0.221 4.221 19 C 0.142 3.858 20 C -0.586 4.586 21 H 0.073 0.927 22 C -0.190 4.190 23 N -0.566 5.566 24 Si 0.793 3.207 25 H -0.187 1.187 26 H -0.206 1.206 27 H -0.199 1.199 28 C -0.144 4.144 29 H 0.107 0.893 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.116 0.884 35 H 0.081 0.919 36 H 0.117 0.883 37 H 0.150 0.850 38 H 0.115 0.885 39 H 0.138 0.862 40 H 0.134 0.866 41 H 0.101 0.899 42 H 0.115 0.885 43 H 0.064 0.936 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.048 0.952 47 H 0.017 0.983 48 H 0.077 0.923 49 H 0.130 0.870 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -15.225 -26.877 -4.829 31.265 hybrid contribution 1.215 0.711 0.290 1.437 sum -14.010 -26.167 -4.539 30.026 Atomic orbital electron populations 1.21767 0.93332 1.03229 1.02512 1.22719 0.95998 0.82927 1.00998 1.87899 1.20139 1.27848 1.94623 1.22938 0.81590 0.97945 0.96337 1.22709 1.01658 0.94261 0.94392 1.22463 1.01013 0.88387 0.99803 1.22945 0.88258 0.98255 1.04620 1.21829 0.99221 0.98862 0.98902 0.83569 1.23222 0.74544 0.79236 0.89460 1.90616 1.55756 1.72555 1.21916 1.86572 1.68258 1.31481 1.40168 1.22805 1.00433 0.89770 0.88363 1.20559 0.78918 0.85500 0.86433 1.90678 1.59401 1.78025 1.17719 1.48204 1.55940 1.19821 1.08700 1.21864 1.00276 1.02238 0.78405 1.22175 0.96881 1.01146 1.01903 1.18796 0.92558 0.80972 0.93491 1.21712 0.96888 0.97177 1.42797 0.92747 1.25853 1.03465 0.94650 0.95074 1.70047 1.38625 1.02598 1.45311 0.85398 0.79018 0.77935 0.78343 1.18703 1.20599 1.19876 1.23107 1.02860 0.90463 0.98009 0.89287 0.92369 0.92678 0.92519 0.92182 0.88443 0.91872 0.88255 0.84957 0.88499 0.86222 0.86552 0.89909 0.88474 0.93637 0.88348 0.92548 0.95191 0.98272 0.92342 0.86997 0.89488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 10.28 71.98 0.74 -0.67 16 2 C 0.05 0.53 6.50 71.98 0.47 1.00 16 3 O -0.39 -6.31 10.28 -148.98 -1.53 -7.84 16 4 C 0.07 0.97 4.37 31.19 0.14 1.10 16 5 C -0.09 -1.70 6.30 30.98 0.20 -1.51 16 6 C -0.12 -2.10 2.81 -52.37 -0.15 -2.25 16 7 C -0.10 -1.91 10.23 30.45 0.31 -1.60 16 8 C -0.17 -3.69 6.30 -11.68 -0.07 -3.76 16 9 H 0.15 2.86 8.14 -2.38 -0.02 2.85 16 10 C 0.49 14.05 7.74 71.24 0.55 14.60 16 11 O -0.52 -15.53 14.90 21.96 0.33 -15.20 16 12 O -0.35 -12.04 9.75 -45.07 -0.44 -12.48 16 13 C 0.06 2.05 4.50 71.24 0.32 2.37 16 14 C 0.50 21.94 7.75 87.66 0.68 22.62 16 15 O -0.58 -31.79 16.08 15.76 0.25 -31.54 16 16 N -0.59 -25.62 2.46 -826.15 -2.03 -27.65 16 17 C 0.09 2.88 5.93 86.38 0.51 3.39 16 18 C -0.16 -4.09 10.24 71.98 0.74 -3.35 16 19 C 0.26 14.29 5.16 85.64 0.44 14.73 16 20 C -0.55 -31.80 9.39 25.60 0.24 -31.56 16 21 H 0.05 3.12 7.81 -2.91 -0.02 3.10 16 22 C 0.01 0.51 5.46 84.65 0.46 0.97 16 23 N -0.93 -56.15 13.29 21.45 0.28 -55.87 16 24 Si 0.97 45.13 29.54 68.60 2.03 47.16 16 25 H -0.26 -11.40 7.11 99.48 0.71 -10.70 16 26 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 27 H -0.27 -12.66 7.11 99.48 0.71 -11.95 16 28 C -0.11 -1.37 7.93 30.98 0.25 -1.13 16 29 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 30 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 33 H 0.06 0.49 8.14 -2.39 -0.02 0.47 16 34 H 0.10 0.95 7.87 -2.39 -0.02 0.93 16 35 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 36 H 0.10 1.83 8.05 -2.39 -0.02 1.81 16 37 H 0.13 1.85 8.14 -2.39 -0.02 1.83 16 38 H 0.10 1.91 8.14 -2.39 -0.02 1.89 16 39 H 0.12 3.26 7.15 -2.38 -0.02 3.25 16 40 H 0.12 3.27 7.40 -2.39 -0.02 3.25 16 41 H 0.08 2.62 8.07 -2.39 -0.02 2.60 16 42 H 0.10 2.35 6.45 -2.39 -0.02 2.33 16 43 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 44 H 0.10 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.06 1.35 7.20 -2.39 -0.02 1.33 16 46 H 0.03 1.64 8.07 -2.39 -0.02 1.62 16 47 H 0.00 -0.05 7.42 -2.39 -0.02 -0.07 16 48 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 49 H 0.11 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -78.60 418.15 5.63 -72.98 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: 0.91 Total: 15.50 kcal Atomic # 6 Polarization: 9.14 SS G_CDS: 5.82 Total: 14.96 kcal Atomic # 7 Polarization: -81.78 SS G_CDS: -1.74 Total: -83.52 kcal Atomic # 8 Polarization: -65.68 SS G_CDS: -1.39 Total: -67.07 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.60 5.63 -72.98 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869930957.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.209 kcal (2) G-P(sol) polarization free energy of solvation -78.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.812 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.977 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds