Wall clock time and date at job start Sat Apr 11 2020 05:44:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47512 * 2 1 4 4 C 1.42895 * 114.00296 * 180.02562 * 3 2 1 5 5 C 1.53883 * 113.59213 * 149.99602 * 4 3 2 6 6 C 1.53262 * 86.88122 * 89.60978 * 5 4 3 7 7 C 1.52591 * 128.57873 * 245.01147 * 6 5 4 8 8 C 1.52464 * 128.58291 * 165.11495 * 6 5 4 9 9 H 1.09001 * 117.51486 * 10.10875 * 8 6 5 10 10 C 1.50698 * 117.50970 * 225.04497 * 8 6 5 11 11 O 1.20822 * 120.00419 * 0.15526 * 10 8 6 12 12 O 1.34228 * 120.00046 * 180.15273 * 10 8 6 13 13 C 1.45199 * 117.00411 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.47522 * 180.02562 * 13 12 10 15 15 O 1.21290 * 119.99894 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00198 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99867 * 359.97438 * 16 14 13 18 18 C 1.52997 * 109.47186 * 269.99805 * 17 16 14 19 19 C 1.46506 * 120.00199 * 179.97438 * 16 14 13 20 20 C 1.50696 * 109.46871 * 89.99405 * 19 16 14 21 21 H 1.07999 * 120.00319 * 0.02562 * 20 19 16 22 22 C 1.37885 * 119.99717 * 180.02562 * 20 19 16 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.53251 * 87.69041 * 25.08514 * 6 5 4 29 29 H 1.09000 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47308 * 300.00803 * 1 2 3 31 31 H 1.09000 * 109.46712 * 59.99708 * 1 2 3 32 32 H 1.09002 * 109.46644 * 239.99530 * 2 1 3 33 33 H 1.09000 * 109.46712 * 120.00292 * 2 1 3 34 34 H 1.09009 * 112.88394 * 18.82845 * 4 3 2 35 35 H 1.08996 * 113.64622 * 335.11433 * 5 4 3 36 36 H 1.09002 * 113.72760 * 204.11498 * 5 4 3 37 37 H 1.09004 * 117.53421 * 134.98786 * 7 6 5 38 38 H 1.09003 * 117.53845 * 349.84477 * 7 6 5 39 39 H 1.09007 * 109.46728 * 60.00092 * 13 12 10 40 40 H 1.08999 * 109.47068 * 300.00114 * 13 12 10 41 41 H 1.08994 * 109.47418 * 30.00487 * 17 16 14 42 42 H 1.09004 * 109.47077 * 150.00105 * 17 16 14 43 43 H 1.09003 * 109.47333 * 300.00653 * 18 17 16 44 44 H 1.09004 * 109.46868 * 60.00171 * 18 17 16 45 45 H 1.09000 * 109.47464 * 179.97438 * 18 17 16 46 46 H 1.09005 * 109.46943 * 329.99725 * 19 16 14 47 47 H 1.09002 * 109.47064 * 209.99988 * 19 16 14 48 48 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.64615 * 89.42073 * 28 6 5 50 50 H 1.09007 * 113.64222 * 220.41615 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9481 2.7261 -0.7058 6 6 3.8504 3.4231 0.6557 7 6 2.9406 4.5752 1.0718 8 6 4.4616 4.7505 1.0904 9 1 4.9056 5.3776 0.3174 10 6 5.1406 4.7970 2.4350 11 8 5.1879 3.8047 3.1226 12 8 5.6929 5.9409 2.8687 13 6 6.3294 5.9126 4.1734 14 6 6.8878 7.2760 4.4898 15 8 6.7622 8.1824 3.6938 16 7 7.5277 7.4880 5.6569 17 6 7.6799 6.3930 6.6181 18 6 6.4831 6.3809 7.5711 19 6 8.0711 8.8134 5.9642 20 6 7.0262 9.6313 6.6784 21 1 6.0547 9.2063 6.8834 22 6 7.3105 10.9223 7.0703 23 7 6.3989 11.6360 7.6941 24 14 8.9906 11.6576 6.7152 25 1 9.9045 11.3759 7.8513 26 1 9.5424 11.0554 5.4750 27 1 8.8605 13.1262 6.5369 28 6 4.0031 2.0427 1.3037 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.9284 0.5459 -0.3251 35 1 3.2592 3.1239 -1.4509 36 1 4.9686 2.6350 -1.0780 37 1 2.4313 4.4935 2.0321 38 1 2.3843 5.0870 0.2865 39 1 7.1374 5.1809 4.1676 40 1 5.5949 5.6367 4.9301 41 1 7.7284 5.4443 6.0836 42 1 8.5975 6.5356 7.1890 43 1 6.4345 7.3296 8.1056 44 1 5.5655 6.2382 7.0002 45 1 6.5960 5.5659 8.2861 46 1 8.3538 9.3138 5.0380 47 1 8.9484 8.7073 6.6023 48 1 6.5990 12.5442 7.9701 49 1 5.0389 1.7600 1.4915 50 1 3.3581 1.8925 2.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000869930958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:10 Heat of formation + Delta-G solvation = -107.146090 kcal Electronic energy + Delta-G solvation = -29408.309033 eV Core-core repulsion = 25210.293387 eV Total energy + Delta-G solvation = -4198.015645 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.97154 -39.87231 -38.97210 -37.40469 -36.18859 -35.38571 -33.66751 -32.70029 -30.99884 -30.35236 -29.36867 -27.22231 -26.11647 -24.74312 -23.28868 -22.93012 -22.85812 -22.25652 -20.61540 -18.98199 -18.60407 -17.89462 -17.12619 -16.95275 -16.57334 -16.40846 -16.15754 -15.90161 -15.64044 -15.25899 -14.59378 -14.43156 -14.21574 -13.99980 -13.63946 -13.32296 -13.32036 -12.97135 -12.93798 -12.66110 -12.50968 -12.40036 -12.21877 -12.15382 -12.02021 -11.71943 -11.68337 -11.52031 -11.41007 -11.08592 -10.84534 -10.76860 -10.57593 -10.54238 -10.42382 -10.27713 -10.15720 -10.11747 -9.75209 -9.51131 -9.09390 -8.59620 -7.82323 -6.09039 -4.07813 2.05496 2.38572 3.16881 3.17319 3.26401 3.35113 3.39107 3.50250 3.73842 4.13472 4.23153 4.37829 4.39239 4.46347 4.52861 4.69427 4.78513 4.79762 4.86844 4.95581 4.98701 5.12800 5.22350 5.24029 5.24631 5.32894 5.35099 5.39567 5.49044 5.50018 5.51927 5.66599 5.70897 5.73378 5.74720 5.77877 5.84871 5.92485 6.07288 6.25784 6.38458 6.61303 6.79443 6.92816 6.93153 7.25751 7.58899 7.74973 8.11428 8.45050 8.82689 8.95069 9.50692 11.04028 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.001931 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.556007 B =14500.154300 C =14708.131685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.364 6.364 4 C 0.065 3.935 5 C -0.099 4.099 6 C -0.117 4.117 7 C -0.107 4.107 8 C -0.155 4.155 9 H 0.137 0.863 10 C 0.492 3.508 11 O -0.508 6.508 12 O -0.326 6.326 13 C 0.051 3.949 14 C 0.510 3.490 15 O -0.517 6.517 16 N -0.589 5.589 17 C 0.107 3.893 18 C -0.173 4.173 19 C 0.217 3.783 20 C -0.528 4.528 21 H 0.077 0.923 22 C 0.072 3.928 23 N -0.896 5.896 24 Si 0.874 3.126 25 H -0.276 1.276 26 H -0.264 1.264 27 H -0.284 1.284 28 C -0.104 4.104 29 H 0.070 0.930 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.048 0.952 33 H 0.049 0.951 34 H 0.077 0.923 35 H 0.082 0.918 36 H 0.100 0.900 37 H 0.104 0.896 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.063 0.937 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.048 0.952 45 H 0.056 0.944 46 H 0.042 0.958 47 H 0.028 0.972 48 H 0.264 0.736 49 H 0.097 0.903 50 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.540 -24.940 -14.664 29.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.020 4.020 3 O -0.283 6.283 4 C 0.007 3.993 5 C -0.136 4.136 6 C -0.117 4.117 7 C -0.144 4.144 8 C -0.174 4.174 9 H 0.155 0.845 10 C 0.335 3.665 11 O -0.397 6.397 12 O -0.240 6.240 13 C -0.026 4.026 14 C 0.295 3.705 15 O -0.393 6.393 16 N -0.323 5.323 17 C -0.017 4.017 18 C -0.231 4.231 19 C 0.097 3.903 20 C -0.567 4.567 21 H 0.096 0.904 22 C -0.130 4.130 23 N -0.535 5.535 24 Si 0.701 3.299 25 H -0.201 1.201 26 H -0.188 1.188 27 H -0.209 1.209 28 C -0.141 4.141 29 H 0.089 0.911 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.118 0.882 37 H 0.123 0.877 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.115 0.885 41 H 0.082 0.918 42 H 0.098 0.902 43 H 0.101 0.899 44 H 0.067 0.933 45 H 0.075 0.925 46 H 0.060 0.940 47 H 0.046 0.954 48 H 0.074 0.926 49 H 0.115 0.885 50 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -5.720 -24.372 -14.771 29.067 hybrid contribution 1.047 0.345 0.302 1.143 sum -4.674 -24.027 -14.469 28.434 Atomic orbital electron populations 1.21747 0.93690 1.02238 1.03247 1.22529 0.95617 0.83835 1.00031 1.87912 1.19580 1.26207 1.94564 1.22940 0.81791 0.97411 0.97206 1.22804 1.01810 0.94300 0.94651 1.22244 1.02305 0.88767 0.98417 1.22860 0.89266 0.98466 1.03829 1.21706 0.97766 1.03812 0.94116 0.84489 1.22629 0.75699 0.80767 0.87371 1.90633 1.56215 1.35798 1.57054 1.86558 1.66019 1.36255 1.35214 1.22913 0.98414 0.98001 0.83256 1.19709 0.79634 0.88517 0.82678 1.90720 1.56399 1.44349 1.47785 1.47893 1.55671 1.12738 1.15969 1.21510 0.99654 0.88957 0.91531 1.22251 0.97736 1.03479 0.99612 1.19732 0.94482 0.79037 0.97039 1.21335 1.00598 0.97966 1.36755 0.90446 1.24861 0.96962 0.96660 0.94544 1.69894 1.33852 1.10137 1.39570 0.86879 0.84726 0.79034 0.79303 1.20137 1.18838 1.20936 1.22936 1.01925 0.91985 0.97280 0.91134 0.91740 0.91852 0.93410 0.93305 0.90530 0.89950 0.88163 0.87741 0.86861 0.88801 0.88479 0.91831 0.90197 0.89945 0.93250 0.92499 0.93980 0.95371 0.92561 0.88463 0.90354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 10.28 37.16 0.38 -0.48 16 2 C 0.06 0.37 6.50 37.16 0.24 0.61 16 3 O -0.36 -3.30 10.28 -35.23 -0.36 -3.66 16 4 C 0.06 0.51 4.37 -25.81 -0.11 0.40 16 5 C -0.10 -0.73 7.93 -26.14 -0.21 -0.94 16 6 C -0.12 -1.13 2.82 -154.73 -0.44 -1.57 16 7 C -0.11 -1.07 10.24 -26.88 -0.28 -1.34 16 8 C -0.16 -1.74 6.30 -91.98 -0.58 -2.32 16 9 H 0.14 1.36 8.14 -51.93 -0.42 0.93 16 10 C 0.49 7.14 7.74 36.00 0.28 7.42 16 11 O -0.51 -7.82 14.89 -18.75 -0.28 -8.10 16 12 O -0.33 -5.57 9.75 -45.90 -0.45 -6.01 16 13 C 0.05 0.84 4.50 36.00 0.16 1.01 16 14 C 0.51 10.70 7.75 -10.99 -0.09 10.62 16 15 O -0.52 -13.21 16.08 -14.11 -0.23 -13.43 16 16 N -0.59 -12.03 2.46 -175.06 -0.43 -12.46 16 17 C 0.11 1.65 5.98 -4.04 -0.02 1.63 16 18 C -0.17 -2.68 10.24 37.16 0.38 -2.30 16 19 C 0.22 5.24 4.27 -5.19 -0.02 5.22 16 20 C -0.53 -14.93 9.48 -34.44 -0.33 -15.26 16 21 H 0.08 2.39 7.67 -52.49 -0.40 1.99 16 22 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 23 N -0.90 -27.46 13.96 55.43 0.77 -26.69 16 24 Si 0.87 21.39 27.47 -169.99 -4.67 16.72 16 25 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 26 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 27 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 28 C -0.10 -1.00 6.30 -26.14 -0.16 -1.16 16 29 H 0.07 0.28 8.14 -51.93 -0.42 -0.14 16 30 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.05 0.26 8.14 -51.93 -0.42 -0.17 16 33 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.47 7.87 -51.92 -0.41 0.06 16 35 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.10 1.11 8.14 -51.93 -0.42 0.68 16 38 H 0.11 0.92 8.14 -51.93 -0.42 0.50 16 39 H 0.09 1.30 7.39 -51.93 -0.38 0.91 16 40 H 0.10 1.49 7.18 -51.93 -0.37 1.11 16 41 H 0.06 0.78 6.44 -51.93 -0.33 0.45 16 42 H 0.08 1.13 7.89 -51.93 -0.41 0.72 16 43 H 0.08 1.56 7.26 -51.93 -0.38 1.19 16 44 H 0.05 0.77 7.22 -51.93 -0.38 0.40 16 45 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.04 1.10 6.48 -51.93 -0.34 0.76 16 47 H 0.03 0.63 7.32 -51.93 -0.38 0.25 16 48 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 49 H 0.10 0.93 8.05 -51.93 -0.42 0.51 16 50 H 0.08 0.85 8.14 -51.92 -0.42 0.43 16 LS Contribution 412.59 15.07 6.22 6.22 Total: -1.00 -35.45 412.59 -8.75 -44.20 By element: Atomic # 1 Polarization: 8.16 SS G_CDS: -8.44 Total: -0.28 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -0.89 Total: 3.51 kcal Atomic # 7 Polarization: -39.50 SS G_CDS: 0.34 Total: -39.15 kcal Atomic # 8 Polarization: -29.90 SS G_CDS: -1.32 Total: -31.22 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -4.67 Total: 16.72 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -35.45 -8.75 -44.20 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869930958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.944 kcal (2) G-P(sol) polarization free energy of solvation -35.453 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.749 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds