Wall clock time and date at job start Sat Apr 11 2020 05:44:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42895 * 109.47512 * 2 1 4 4 C 1.42895 * 114.00296 * 180.02562 * 3 2 1 5 5 C 1.53883 * 113.59213 * 149.99602 * 4 3 2 6 6 C 1.53262 * 86.88122 * 89.60978 * 5 4 3 7 7 C 1.52591 * 128.57873 * 245.01147 * 6 5 4 8 8 C 1.52464 * 128.58291 * 165.11495 * 6 5 4 9 9 H 1.09001 * 117.51486 * 10.10875 * 8 6 5 10 10 C 1.50698 * 117.50970 * 225.04497 * 8 6 5 11 11 O 1.20822 * 120.00419 * 0.15526 * 10 8 6 12 12 O 1.34228 * 120.00046 * 180.15273 * 10 8 6 13 13 C 1.45199 * 117.00411 * 179.97438 * 12 10 8 14 14 C 1.50697 * 109.47522 * 180.02562 * 13 12 10 15 15 O 1.21290 * 119.99894 * 359.97438 * 14 13 12 16 16 N 1.34772 * 120.00198 * 180.02562 * 14 13 12 17 17 C 1.46499 * 119.99867 * 359.97438 * 16 14 13 18 18 C 1.52997 * 109.47186 * 269.99805 * 17 16 14 19 19 C 1.46506 * 120.00199 * 179.97438 * 16 14 13 20 20 C 1.50696 * 109.46871 * 89.99405 * 19 16 14 21 21 H 1.07999 * 120.00319 * 0.02562 * 20 19 16 22 22 C 1.37885 * 119.99717 * 180.02562 * 20 19 16 23 23 N 1.31516 * 119.99913 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99766 * 0.02562 * 22 20 19 25 25 H 1.48500 * 109.47353 * 269.99586 * 24 22 20 26 26 H 1.48501 * 109.47293 * 30.00037 * 24 22 20 27 27 H 1.48504 * 109.46680 * 149.99835 * 24 22 20 28 28 C 1.53251 * 87.69041 * 25.08514 * 6 5 4 29 29 H 1.09000 * 109.47615 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.47308 * 300.00803 * 1 2 3 31 31 H 1.09000 * 109.46712 * 59.99708 * 1 2 3 32 32 H 1.09002 * 109.46644 * 239.99530 * 2 1 3 33 33 H 1.09000 * 109.46712 * 120.00292 * 2 1 3 34 34 H 1.09009 * 112.88394 * 18.82845 * 4 3 2 35 35 H 1.08996 * 113.64622 * 335.11433 * 5 4 3 36 36 H 1.09002 * 113.72760 * 204.11498 * 5 4 3 37 37 H 1.09004 * 117.53421 * 134.98786 * 7 6 5 38 38 H 1.09003 * 117.53845 * 349.84477 * 7 6 5 39 39 H 1.09007 * 109.46728 * 60.00092 * 13 12 10 40 40 H 1.08999 * 109.47068 * 300.00114 * 13 12 10 41 41 H 1.08994 * 109.47418 * 30.00487 * 17 16 14 42 42 H 1.09004 * 109.47077 * 150.00105 * 17 16 14 43 43 H 1.09003 * 109.47333 * 300.00653 * 18 17 16 44 44 H 1.09004 * 109.46868 * 60.00171 * 18 17 16 45 45 H 1.09000 * 109.47464 * 179.97438 * 18 17 16 46 46 H 1.09005 * 109.46943 * 329.99725 * 19 16 14 47 47 H 1.09002 * 109.47064 * 209.99988 * 19 16 14 48 48 H 0.97001 * 119.99646 * 179.97438 * 23 22 20 49 49 H 1.09001 * 113.64615 * 89.42073 * 28 6 5 50 50 H 1.09007 * 113.64222 * 220.41615 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.4309 1.4600 -0.0006 5 6 3.9481 2.7261 -0.7058 6 6 3.8504 3.4231 0.6557 7 6 2.9406 4.5752 1.0718 8 6 4.4616 4.7505 1.0904 9 1 4.9056 5.3776 0.3174 10 6 5.1406 4.7970 2.4350 11 8 5.1879 3.8047 3.1226 12 8 5.6929 5.9409 2.8687 13 6 6.3294 5.9126 4.1734 14 6 6.8878 7.2760 4.4898 15 8 6.7622 8.1824 3.6938 16 7 7.5277 7.4880 5.6569 17 6 7.6799 6.3930 6.6181 18 6 6.4831 6.3809 7.5711 19 6 8.0711 8.8134 5.9642 20 6 7.0262 9.6313 6.6784 21 1 6.0547 9.2063 6.8834 22 6 7.3105 10.9223 7.0703 23 7 6.3989 11.6360 7.6941 24 14 8.9906 11.6576 6.7152 25 1 9.9045 11.3759 7.8513 26 1 9.5424 11.0554 5.4750 27 1 8.8605 13.1262 6.5369 28 6 4.0031 2.0427 1.3037 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 -0.3633 0.5139 -0.8900 32 1 1.8932 -0.5139 -0.8900 33 1 1.8932 -0.5139 0.8900 34 1 3.9284 0.5459 -0.3251 35 1 3.2592 3.1239 -1.4509 36 1 4.9686 2.6350 -1.0780 37 1 2.4313 4.4935 2.0321 38 1 2.3843 5.0870 0.2865 39 1 7.1374 5.1809 4.1676 40 1 5.5949 5.6367 4.9301 41 1 7.7284 5.4443 6.0836 42 1 8.5975 6.5356 7.1890 43 1 6.4345 7.3296 8.1056 44 1 5.5655 6.2382 7.0002 45 1 6.5960 5.5659 8.2861 46 1 8.3538 9.3138 5.0380 47 1 8.9484 8.7073 6.6023 48 1 6.5990 12.5442 7.9701 49 1 5.0389 1.7600 1.4915 50 1 3.3581 1.8925 2.1696 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000869930958.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:09 Heat of formation + Delta-G solvation = -128.440188 kcal Electronic energy + Delta-G solvation = -29409.232414 eV Core-core repulsion = 25210.293387 eV Total energy + Delta-G solvation = -4198.939027 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.02285 -40.98272 -40.29875 -38.20024 -37.36793 -37.00394 -34.83129 -34.37608 -32.02059 -31.51561 -30.84051 -28.95349 -26.77729 -25.87075 -24.25572 -24.14305 -23.80247 -23.52147 -21.66396 -20.33911 -19.57537 -19.12392 -19.01703 -18.08650 -17.78488 -17.57825 -17.41824 -16.87479 -16.59460 -16.33656 -16.03666 -15.85855 -15.16580 -14.90644 -14.80976 -14.72756 -14.46361 -14.33056 -14.18374 -13.85977 -13.75743 -13.54089 -13.41823 -13.10113 -13.05337 -12.96136 -12.72265 -12.67807 -12.44136 -12.26970 -12.09295 -12.07588 -12.02059 -11.81365 -11.68582 -11.64000 -11.39677 -11.03911 -10.93589 -10.80159 -10.77804 -10.35911 -9.55858 -8.31992 -6.36609 0.96022 1.18007 1.32555 1.38066 1.47914 1.55552 2.30109 2.32551 2.57336 2.76424 3.01409 3.30509 3.39723 3.52361 3.61417 3.71284 3.80397 3.84409 3.95485 4.00285 4.14018 4.23301 4.27259 4.38261 4.45178 4.54099 4.54378 4.55254 4.71853 4.74368 4.75524 4.80636 4.87893 4.89571 4.92088 4.93401 4.98050 5.05709 5.11656 5.12732 5.23231 5.25888 5.31401 5.43478 5.46856 5.57397 6.23547 6.38800 6.48142 6.62966 6.65220 7.14993 7.29596 8.84633 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.024522 B = 0.001931 C = 0.001903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1141.556007 B =14500.154300 C =14708.131685 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.050 3.950 3 O -0.385 6.385 4 C 0.069 3.931 5 C -0.089 4.089 6 C -0.115 4.115 7 C -0.110 4.110 8 C -0.167 4.167 9 H 0.150 0.850 10 C 0.491 3.509 11 O -0.520 6.520 12 O -0.349 6.349 13 C 0.061 3.939 14 C 0.502 3.498 15 O -0.575 6.575 16 N -0.592 5.592 17 C 0.099 3.901 18 C -0.167 4.167 19 C 0.223 3.777 20 C -0.532 4.532 21 H 0.033 0.967 22 C 0.009 3.991 23 N -0.945 5.945 24 Si 0.947 3.053 25 H -0.251 1.251 26 H -0.255 1.255 27 H -0.284 1.284 28 C -0.110 4.110 29 H 0.088 0.912 30 H 0.052 0.948 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.099 0.901 35 H 0.088 0.912 36 H 0.120 0.880 37 H 0.092 0.908 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.109 0.891 41 H 0.106 0.894 42 H 0.098 0.902 43 H 0.038 0.962 44 H 0.041 0.959 45 H 0.095 0.905 46 H 0.022 0.978 47 H 0.056 0.944 48 H 0.267 0.733 49 H 0.097 0.903 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.867 -27.487 -15.891 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.026 4.026 3 O -0.305 6.305 4 C 0.011 3.989 5 C -0.125 4.125 6 C -0.115 4.115 7 C -0.147 4.147 8 C -0.186 4.186 9 H 0.168 0.832 10 C 0.335 3.665 11 O -0.409 6.409 12 O -0.265 6.265 13 C -0.015 4.015 14 C 0.289 3.711 15 O -0.454 6.454 16 N -0.324 5.324 17 C -0.022 4.022 18 C -0.225 4.225 19 C 0.102 3.898 20 C -0.570 4.570 21 H 0.051 0.949 22 C -0.189 4.189 23 N -0.586 5.586 24 Si 0.769 3.231 25 H -0.175 1.175 26 H -0.179 1.179 27 H -0.210 1.210 28 C -0.147 4.147 29 H 0.107 0.893 30 H 0.071 0.929 31 H 0.079 0.921 32 H 0.082 0.918 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.107 0.893 36 H 0.138 0.862 37 H 0.110 0.890 38 H 0.150 0.850 39 H 0.146 0.854 40 H 0.127 0.873 41 H 0.124 0.876 42 H 0.117 0.883 43 H 0.057 0.943 44 H 0.060 0.940 45 H 0.114 0.886 46 H 0.040 0.960 47 H 0.074 0.926 48 H 0.076 0.924 49 H 0.115 0.885 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.046 -26.985 -15.968 31.616 hybrid contribution 0.392 1.048 0.741 1.342 sum -3.654 -25.937 -15.227 30.297 Atomic orbital electron populations 1.21767 0.93323 1.03231 1.02513 1.22706 0.96015 0.83002 1.00891 1.87890 1.20256 1.27755 1.94584 1.22965 0.81517 0.98581 0.95843 1.22863 1.03083 0.93214 0.93384 1.22489 1.00742 0.88155 1.00152 1.22959 0.88591 0.99151 1.03958 1.21843 0.98285 1.05754 0.92687 0.83210 1.23231 0.75182 0.79850 0.88208 1.90615 1.56699 1.35886 1.57670 1.86567 1.66623 1.37895 1.35384 1.22811 0.99627 0.95326 0.83752 1.20529 0.78713 0.89809 0.82064 1.90681 1.58545 1.46559 1.49643 1.47984 1.54991 1.12617 1.16841 1.21912 1.00181 0.88963 0.91151 1.22183 0.97758 1.02554 1.00044 1.19445 0.94098 0.80539 0.95761 1.21546 0.99950 0.98757 1.36763 0.94864 1.25853 1.01606 0.97146 0.94252 1.70055 1.36529 1.10722 1.41266 0.85729 0.79468 0.77731 0.80145 1.17497 1.17864 1.21011 1.22978 1.01678 0.92503 0.97554 0.89312 0.92915 0.92103 0.91817 0.93087 0.88273 0.89340 0.86223 0.88965 0.84968 0.85380 0.87332 0.87571 0.88324 0.94283 0.94009 0.88612 0.95988 0.92589 0.92374 0.88453 0.92363 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.54 10.28 71.98 0.74 -0.80 16 2 C 0.05 0.58 6.50 71.98 0.47 1.04 16 3 O -0.39 -6.42 10.28 -148.98 -1.53 -7.95 16 4 C 0.07 0.94 4.37 31.19 0.14 1.08 16 5 C -0.09 -1.09 7.93 30.98 0.25 -0.85 16 6 C -0.12 -2.07 2.82 -52.32 -0.15 -2.22 16 7 C -0.11 -2.12 10.24 30.50 0.31 -1.81 16 8 C -0.17 -3.61 6.30 -11.68 -0.07 -3.68 16 9 H 0.15 2.79 8.14 -2.39 -0.02 2.77 16 10 C 0.49 13.93 7.74 71.24 0.55 14.48 16 11 O -0.52 -15.48 14.89 21.98 0.33 -15.15 16 12 O -0.35 -11.84 9.75 -45.04 -0.44 -12.28 16 13 C 0.06 1.95 4.50 71.24 0.32 2.27 16 14 C 0.50 21.14 7.75 87.66 0.68 21.82 16 15 O -0.57 -30.28 16.08 15.74 0.25 -30.02 16 16 N -0.59 -23.88 2.46 -826.15 -2.03 -25.91 16 17 C 0.10 2.82 5.98 86.38 0.52 3.34 16 18 C -0.17 -5.04 10.24 71.98 0.74 -4.30 16 19 C 0.22 10.77 4.27 85.63 0.37 11.14 16 20 C -0.53 -31.07 9.48 25.60 0.24 -30.82 16 21 H 0.03 2.17 7.67 -2.91 -0.02 2.15 16 22 C 0.01 0.54 5.47 84.66 0.46 1.01 16 23 N -0.95 -59.94 13.96 21.45 0.30 -59.64 16 24 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 25 H -0.25 -10.70 7.11 99.48 0.71 -9.99 16 26 H -0.25 -11.46 6.54 99.48 0.65 -10.81 16 27 H -0.28 -13.26 7.11 99.48 0.71 -12.56 16 28 C -0.11 -1.98 6.30 30.98 0.20 -1.79 16 29 H 0.09 0.55 8.14 -2.39 -0.02 0.53 16 30 H 0.05 0.65 8.14 -2.38 -0.02 0.63 16 31 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.05 0.55 8.14 -2.39 -0.02 0.53 16 34 H 0.10 0.91 7.87 -2.38 -0.02 0.89 16 35 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.99 8.14 -2.38 -0.02 1.97 16 38 H 0.13 1.99 8.14 -2.39 -0.02 1.97 16 39 H 0.13 3.15 7.39 -2.38 -0.02 3.13 16 40 H 0.11 3.19 7.18 -2.39 -0.02 3.17 16 41 H 0.11 2.16 6.44 -2.39 -0.02 2.15 16 42 H 0.10 2.47 7.89 -2.39 -0.02 2.45 16 43 H 0.04 1.51 7.26 -2.39 -0.02 1.49 16 44 H 0.04 1.29 7.22 -2.39 -0.02 1.27 16 45 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.02 1.16 6.48 -2.38 -0.02 1.14 16 47 H 0.06 2.40 7.32 -2.39 -0.02 2.38 16 48 H 0.27 15.78 8.31 -92.71 -0.77 15.01 16 49 H 0.10 1.74 8.05 -2.39 -0.02 1.72 16 50 H 0.06 1.27 8.14 -2.38 -0.02 1.25 16 Total: -1.00 -81.73 412.59 5.38 -76.35 By element: Atomic # 1 Polarization: 17.66 SS G_CDS: 0.86 Total: 18.53 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 5.75 Total: 9.91 kcal Atomic # 7 Polarization: -83.82 SS G_CDS: -1.73 Total: -85.55 kcal Atomic # 8 Polarization: -64.02 SS G_CDS: -1.39 Total: -65.41 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Total: -81.73 5.38 -76.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000869930958.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.087 kcal (2) G-P(sol) polarization free energy of solvation -81.734 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.821 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.353 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.440 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds