Wall clock time and date at job start Sat Apr 11 2020 05:44:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00053 * 2 1 4 4 O 1.20830 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99791 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47204 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47222 * 180.02562 * 6 5 3 8 8 C 1.37098 * 120.00022 * 268.46950 * 7 6 5 9 9 H 1.08000 * 119.99899 * 137.66580 * 8 7 6 10 10 C 1.38951 * 119.99954 * 317.67279 * 8 7 6 11 11 N 1.31412 * 120.00053 * 342.36056 * 10 8 7 12 12 Si 1.86802 * 120.00166 * 162.36144 * 10 8 7 13 13 H 1.48506 * 109.47014 * 89.99783 * 12 10 8 14 14 H 1.48491 * 109.47303 * 209.99769 * 12 10 8 15 15 H 1.48501 * 109.47131 * 330.00344 * 12 10 8 16 16 C 1.34774 * 120.00265 * 88.47504 * 7 6 5 17 17 O 1.21296 * 120.00012 * 3.25902 * 16 7 6 18 18 C 1.50707 * 120.00267 * 183.26279 * 16 7 6 19 19 H 1.09004 * 109.40890 * 21.31891 * 18 16 7 20 20 C 1.52959 * 109.41270 * 141.17736 * 18 16 7 21 21 C 1.53232 * 109.40003 * 183.63540 * 20 18 16 22 22 C 1.51265 * 108.53587 * 305.37059 * 21 20 18 23 23 O 1.20762 * 120.85015 * 231.32341 * 22 21 20 24 24 C 1.51266 * 118.30013 * 51.60248 * 22 21 20 25 25 H 1.08997 * 109.62574 * 188.67963 * 24 22 21 26 26 C 1.53006 * 109.62581 * 68.11551 * 24 22 21 27 27 C 1.52955 * 109.35401 * 261.49882 * 18 16 7 28 28 C 1.53003 * 109.48139 * 296.30339 * 27 18 16 29 29 C 1.53000 * 109.48609 * 56.33570 * 27 18 16 30 30 H 1.09004 * 109.46895 * 59.99500 * 1 2 3 31 31 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47108 * 300.00263 * 1 2 3 33 33 H 1.08998 * 109.47332 * 60.00145 * 5 3 2 34 34 H 1.09004 * 109.47450 * 300.00384 * 5 3 2 35 35 H 1.08998 * 109.47154 * 59.99673 * 6 5 3 36 36 H 1.09004 * 109.46935 * 300.00337 * 6 5 3 37 37 H 0.96998 * 120.00214 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.48358 * 63.65493 * 20 18 16 39 39 H 1.09004 * 109.47874 * 303.61593 * 20 18 16 40 40 H 1.09004 * 109.62289 * 185.65506 * 21 20 18 41 41 H 1.08997 * 109.62440 * 65.09135 * 21 20 18 42 42 H 1.08999 * 109.46973 * 59.99711 * 26 24 22 43 43 H 1.09001 * 109.46980 * 180.02562 * 26 24 22 44 44 H 1.09004 * 109.46867 * 299.99717 * 26 24 22 45 45 H 1.09007 * 109.46868 * 60.00609 * 28 27 18 46 46 H 1.08998 * 109.47129 * 180.02562 * 28 27 18 47 47 H 1.08992 * 109.47256 * 300.00792 * 28 27 18 48 48 H 1.08994 * 109.47137 * 53.10890 * 29 27 18 49 49 H 1.08999 * 109.46588 * 173.10724 * 29 27 18 50 50 H 1.09000 * 109.46817 * 293.10587 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7419 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1461 2.8856 1.1879 9 1 7.0465 2.3054 1.3264 10 6 5.6799 3.6999 2.2127 11 7 4.8131 4.6527 1.9522 12 14 6.2851 3.4404 3.9608 13 1 7.4979 4.2657 4.1924 14 1 5.2229 3.8424 4.9173 15 1 6.6162 2.0069 4.1623 16 6 6.1377 2.8232 -1.1657 17 8 5.5319 2.8237 -2.2165 18 6 7.6448 2.8277 -1.1649 19 1 8.0076 2.4529 -0.2078 20 6 8.1565 1.9274 -2.2906 21 6 9.6863 1.8601 -2.2329 22 6 10.2313 3.2707 -2.2664 23 8 11.0875 3.5852 -3.0579 24 6 9.6810 4.2758 -1.2789 25 1 10.0522 5.2708 -1.5240 26 6 10.1161 3.8954 0.1378 27 6 8.1475 4.2570 -1.3747 28 6 7.7128 4.7533 -2.7552 29 6 7.5589 5.1686 -0.2960 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.9564 0.7805 -0.8891 34 1 3.9557 0.7807 0.8908 35 1 3.6101 3.2359 0.8910 36 1 3.6108 3.2363 -0.8889 37 1 4.4878 5.2214 2.6675 38 1 7.8466 2.3361 -3.2523 39 1 7.7437 0.9257 -2.1710 40 1 10.0608 1.3024 -3.0913 41 1 9.9966 1.3694 -1.3104 42 1 11.2046 3.8907 0.1947 43 1 9.7179 4.6209 0.8473 44 1 9.7352 2.9034 0.3808 45 1 6.6249 4.7376 -2.8209 46 1 8.0715 5.7716 -2.9047 47 1 8.1326 4.1040 -3.5235 48 1 7.7657 4.7476 0.6878 49 1 8.0107 6.1578 -0.3703 50 1 6.4812 5.2497 -0.4374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000871343245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:32 Heat of formation + Delta-G solvation = -171.807162 kcal Electronic energy + Delta-G solvation = -32418.567436 eV Core-core repulsion = 28217.747876 eV Total energy + Delta-G solvation = -4200.819560 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.70441 -40.06714 -38.69235 -36.79029 -36.14609 -34.99479 -32.76652 -32.08048 -31.17062 -30.57237 -27.96451 -27.21023 -26.46197 -25.08515 -24.37955 -23.60280 -21.96608 -20.50633 -20.01951 -19.14492 -17.82022 -17.26444 -16.69919 -16.27351 -16.20688 -15.96964 -15.50559 -15.32498 -14.77739 -14.60781 -14.34197 -14.05911 -13.83524 -13.52515 -13.44872 -13.14082 -12.76433 -12.59277 -12.40080 -12.25406 -12.14546 -11.94580 -11.93014 -11.68138 -11.53826 -11.35116 -11.29982 -11.24259 -11.08141 -11.07286 -10.81978 -10.62679 -10.58157 -10.48543 -10.21413 -10.14109 -10.06588 -10.00081 -9.67752 -9.12434 -8.99940 -8.42049 -7.56422 -6.43759 -4.20909 2.16680 2.62560 3.00485 3.04728 3.16665 3.16939 3.77849 4.04036 4.29689 4.60109 4.84685 4.89533 4.98719 5.19858 5.21489 5.23498 5.27180 5.32837 5.42467 5.55573 5.60171 5.65166 5.68963 5.76530 5.78209 5.86091 5.94930 6.03375 6.04112 6.11624 6.18114 6.22112 6.23117 6.37598 6.39649 6.44880 6.57336 6.65777 6.69368 6.75573 6.78108 6.86356 7.00324 7.24931 7.36287 7.38814 7.69285 7.87022 8.13782 8.25179 8.99525 9.40046 9.83984 10.57996 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.004378 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.644585 B = 6394.751664 C = 7817.867388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.367 6.367 3 C 0.465 3.535 4 O -0.505 6.505 5 C -0.124 4.124 6 C 0.131 3.869 7 N -0.437 5.437 8 C -0.345 4.345 9 H 0.088 0.912 10 C 0.053 3.947 11 N -0.849 5.849 12 Si 0.901 3.099 13 H -0.275 1.275 14 H -0.283 1.283 15 H -0.269 1.269 16 C 0.490 3.510 17 O -0.598 6.598 18 C -0.089 4.089 19 H 0.100 0.900 20 C -0.101 4.101 21 C -0.169 4.169 22 C 0.373 3.627 23 O -0.471 6.471 24 C -0.127 4.127 25 H 0.090 0.910 26 C -0.143 4.143 27 C -0.031 4.031 28 C -0.148 4.148 29 C -0.132 4.132 30 H 0.059 0.941 31 H 0.095 0.905 32 H 0.060 0.940 33 H 0.096 0.904 34 H 0.105 0.895 35 H 0.109 0.891 36 H 0.065 0.935 37 H 0.270 0.730 38 H 0.078 0.922 39 H 0.071 0.929 40 H 0.084 0.916 41 H 0.097 0.903 42 H 0.050 0.950 43 H 0.076 0.924 44 H 0.068 0.932 45 H 0.076 0.924 46 H 0.046 0.954 47 H 0.047 0.953 48 H 0.078 0.922 49 H 0.034 0.966 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.453 -6.073 -0.332 6.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.284 6.284 3 C 0.308 3.692 4 O -0.392 6.392 5 C -0.163 4.163 6 C 0.007 3.993 7 N -0.155 5.155 8 C -0.473 4.473 9 H 0.106 0.894 10 C -0.155 4.155 11 N -0.483 5.483 12 Si 0.728 3.272 13 H -0.201 1.201 14 H -0.208 1.208 15 H -0.193 1.193 16 C 0.279 3.721 17 O -0.483 6.483 18 C -0.110 4.110 19 H 0.118 0.882 20 C -0.139 4.139 21 C -0.206 4.206 22 C 0.249 3.751 23 O -0.345 6.345 24 C -0.146 4.146 25 H 0.108 0.892 26 C -0.200 4.200 27 C -0.032 4.032 28 C -0.205 4.205 29 C -0.189 4.189 30 H 0.078 0.922 31 H 0.114 0.886 32 H 0.078 0.922 33 H 0.114 0.886 34 H 0.123 0.877 35 H 0.127 0.873 36 H 0.083 0.917 37 H 0.081 0.919 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.102 0.898 41 H 0.116 0.884 42 H 0.070 0.930 43 H 0.095 0.905 44 H 0.087 0.913 45 H 0.095 0.905 46 H 0.065 0.935 47 H 0.066 0.934 48 H 0.097 0.903 49 H 0.053 0.947 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 2.232 -5.432 -1.140 5.983 hybrid contribution -0.066 -0.075 1.142 1.146 sum 2.166 -5.507 0.002 5.918 Atomic orbital electron populations 1.23166 0.77363 1.03028 1.02336 1.86539 1.22753 1.34461 1.84657 1.24109 0.92452 0.80880 0.71744 1.90656 1.67293 1.36225 1.45031 1.21922 0.85769 1.03523 1.05109 1.21069 0.82782 0.90574 1.04911 1.43317 1.03997 1.63398 1.04773 1.19196 1.11216 1.26287 0.90575 0.89430 1.25342 0.96690 0.93593 0.99847 1.69900 1.29988 1.15174 1.33274 0.86348 0.78749 0.79078 0.83064 1.20095 1.20843 1.19313 1.20303 0.88932 0.78978 0.83900 1.90534 1.70388 1.55419 1.31928 1.21225 0.94378 0.95357 1.00077 0.88185 1.21460 0.91626 1.00506 1.00331 1.22323 0.98173 0.95843 1.04298 1.24974 0.78205 0.91204 0.80683 1.90353 1.26969 1.81731 1.35465 1.22086 0.97159 0.99230 0.96168 0.89185 1.21820 1.00312 1.03365 0.94504 1.20388 0.90950 0.94916 0.96942 1.22040 1.03491 0.99576 0.95379 1.21894 1.02013 0.96396 0.98627 0.92189 0.88630 0.92162 0.88596 0.87733 0.87349 0.91697 0.91909 0.90366 0.91035 0.89758 0.88436 0.93049 0.90498 0.91340 0.90490 0.93476 0.93363 0.90337 0.94714 0.90841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.42 10.56 101.05 1.07 1.48 16 2 O -0.37 -5.74 10.57 -39.25 -0.41 -6.15 16 3 C 0.47 8.52 7.96 36.00 0.29 8.80 16 4 O -0.51 -10.61 15.73 -18.75 -0.30 -10.90 16 5 C -0.12 -2.29 6.13 -27.88 -0.17 -2.46 16 6 C 0.13 2.88 4.28 -4.04 -0.02 2.86 16 7 N -0.44 -9.41 2.32 -114.81 -0.27 -9.68 16 8 C -0.35 -7.32 6.33 -14.93 -0.09 -7.42 16 9 H 0.09 1.76 6.47 -52.49 -0.34 1.42 16 10 C 0.05 1.17 4.78 -17.47 -0.08 1.08 16 11 N -0.85 -20.20 11.60 55.50 0.64 -19.56 16 12 Si 0.90 17.46 29.59 -169.99 -5.03 12.43 16 13 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 14 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 15 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 16 C 0.49 10.22 4.97 -10.98 -0.05 10.17 16 17 O -0.60 -13.93 14.46 5.54 0.08 -13.85 16 18 C -0.09 -1.53 1.26 -91.81 -0.12 -1.64 16 19 H 0.10 1.66 4.27 -51.93 -0.22 1.44 16 20 C -0.10 -1.54 4.60 -26.63 -0.12 -1.66 16 21 C -0.17 -2.20 5.89 -27.49 -0.16 -2.36 16 22 C 0.37 5.62 5.08 -28.48 -0.14 5.47 16 23 O -0.47 -8.33 17.89 6.00 0.11 -8.22 16 24 C -0.13 -1.85 2.27 -91.15 -0.21 -2.06 16 25 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 26 C -0.14 -1.84 8.39 37.16 0.31 -1.53 16 27 C -0.03 -0.52 0.33 -154.19 -0.05 -0.57 16 28 C -0.15 -2.56 7.52 37.16 0.28 -2.28 16 29 C -0.13 -2.41 6.42 37.16 0.24 -2.17 16 30 H 0.06 0.71 8.13 -51.93 -0.42 0.28 16 31 H 0.10 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.10 1.71 8.14 -51.93 -0.42 1.29 16 34 H 0.10 1.81 8.14 -51.93 -0.42 1.38 16 35 H 0.11 2.62 5.72 -51.93 -0.30 2.32 16 36 H 0.06 1.57 7.38 -51.93 -0.38 1.18 16 37 H 0.27 6.27 8.31 -40.82 -0.34 5.93 16 38 H 0.08 1.29 6.03 -51.93 -0.31 0.98 16 39 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 40 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 41 H 0.10 1.08 7.80 -51.93 -0.41 0.67 16 42 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 43 H 0.08 1.01 6.61 -51.93 -0.34 0.67 16 44 H 0.07 0.85 5.95 -51.93 -0.31 0.54 16 45 H 0.08 1.53 6.40 -51.93 -0.33 1.19 16 46 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.05 0.81 5.60 -51.93 -0.29 0.52 16 48 H 0.08 1.47 5.38 -51.93 -0.28 1.19 16 49 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 50 H 0.07 1.61 7.26 -51.93 -0.38 1.23 16 LS Contribution 382.95 15.07 5.77 5.77 Total: -1.00 -27.56 382.95 -6.12 -33.68 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -7.68 Total: 10.75 kcal Atomic # 6 Polarization: 4.77 SS G_CDS: 0.96 Total: 5.73 kcal Atomic # 7 Polarization: -29.61 SS G_CDS: 0.38 Total: -29.23 kcal Atomic # 8 Polarization: -38.60 SS G_CDS: -0.52 Total: -39.12 kcal Atomic # 14 Polarization: 17.46 SS G_CDS: -5.03 Total: 12.43 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -27.56 -6.12 -33.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.128 kcal (2) G-P(sol) polarization free energy of solvation -27.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds