Wall clock time and date at job start Sat Apr 11 2020 05:44:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34226 * 117.00053 * 2 1 4 4 O 1.20830 * 120.00279 * 0.02562 * 3 2 1 5 5 C 1.50696 * 119.99791 * 179.97438 * 3 2 1 6 6 C 1.53000 * 109.47204 * 180.02562 * 5 3 2 7 7 N 1.46496 * 109.47222 * 180.02562 * 6 5 3 8 8 C 1.37098 * 120.00022 * 268.46950 * 7 6 5 9 9 H 1.08000 * 119.99899 * 137.66580 * 8 7 6 10 10 C 1.38951 * 119.99954 * 317.67279 * 8 7 6 11 11 N 1.31412 * 120.00053 * 342.36056 * 10 8 7 12 12 Si 1.86802 * 120.00166 * 162.36144 * 10 8 7 13 13 H 1.48506 * 109.47014 * 89.99783 * 12 10 8 14 14 H 1.48491 * 109.47303 * 209.99769 * 12 10 8 15 15 H 1.48501 * 109.47131 * 330.00344 * 12 10 8 16 16 C 1.34774 * 120.00265 * 88.47504 * 7 6 5 17 17 O 1.21296 * 120.00012 * 3.25902 * 16 7 6 18 18 C 1.50707 * 120.00267 * 183.26279 * 16 7 6 19 19 H 1.09004 * 109.40890 * 21.31891 * 18 16 7 20 20 C 1.52959 * 109.41270 * 141.17736 * 18 16 7 21 21 C 1.53232 * 109.40003 * 183.63540 * 20 18 16 22 22 C 1.51265 * 108.53587 * 305.37059 * 21 20 18 23 23 O 1.20762 * 120.85015 * 231.32341 * 22 21 20 24 24 C 1.51266 * 118.30013 * 51.60248 * 22 21 20 25 25 H 1.08997 * 109.62574 * 188.67963 * 24 22 21 26 26 C 1.53006 * 109.62581 * 68.11551 * 24 22 21 27 27 C 1.52955 * 109.35401 * 261.49882 * 18 16 7 28 28 C 1.53003 * 109.48139 * 296.30339 * 27 18 16 29 29 C 1.53000 * 109.48609 * 56.33570 * 27 18 16 30 30 H 1.09004 * 109.46895 * 59.99500 * 1 2 3 31 31 H 1.08998 * 109.47349 * 179.97438 * 1 2 3 32 32 H 1.08998 * 109.47108 * 300.00263 * 1 2 3 33 33 H 1.08998 * 109.47332 * 60.00145 * 5 3 2 34 34 H 1.09004 * 109.47450 * 300.00384 * 5 3 2 35 35 H 1.08998 * 109.47154 * 59.99673 * 6 5 3 36 36 H 1.09004 * 109.46935 * 300.00337 * 6 5 3 37 37 H 0.96998 * 120.00214 * 180.02562 * 11 10 8 38 38 H 1.08993 * 109.48358 * 63.65493 * 20 18 16 39 39 H 1.09004 * 109.47874 * 303.61593 * 20 18 16 40 40 H 1.09004 * 109.62289 * 185.65506 * 21 20 18 41 41 H 1.08997 * 109.62440 * 65.09135 * 21 20 18 42 42 H 1.08999 * 109.46973 * 59.99711 * 26 24 22 43 43 H 1.09001 * 109.46980 * 180.02562 * 26 24 22 44 44 H 1.09004 * 109.46867 * 299.99717 * 26 24 22 45 45 H 1.09007 * 109.46868 * 60.00609 * 28 27 18 46 46 H 1.08998 * 109.47129 * 180.02562 * 28 27 18 47 47 H 1.08992 * 109.47256 * 300.00792 * 28 27 18 48 48 H 1.08994 * 109.47137 * 53.10890 * 29 27 18 49 49 H 1.08999 * 109.46588 * 173.10724 * 29 27 18 50 50 H 1.09000 * 109.46817 * 293.10587 * 29 27 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0002 2.7419 0.0011 7 7 5.4632 2.8185 0.0011 8 6 6.1461 2.8856 1.1879 9 1 7.0465 2.3054 1.3264 10 6 5.6799 3.6999 2.2127 11 7 4.8131 4.6527 1.9522 12 14 6.2851 3.4404 3.9608 13 1 7.4979 4.2657 4.1924 14 1 5.2229 3.8424 4.9173 15 1 6.6162 2.0069 4.1623 16 6 6.1377 2.8232 -1.1657 17 8 5.5319 2.8237 -2.2165 18 6 7.6448 2.8277 -1.1649 19 1 8.0076 2.4529 -0.2078 20 6 8.1565 1.9274 -2.2906 21 6 9.6863 1.8601 -2.2329 22 6 10.2313 3.2707 -2.2664 23 8 11.0875 3.5852 -3.0579 24 6 9.6810 4.2758 -1.2789 25 1 10.0522 5.2708 -1.5240 26 6 10.1161 3.8954 0.1378 27 6 8.1475 4.2570 -1.3747 28 6 7.7128 4.7533 -2.7552 29 6 7.5589 5.1686 -0.2960 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3634 -1.0276 -0.0005 32 1 -0.3633 0.5139 0.8899 33 1 3.9564 0.7805 -0.8891 34 1 3.9557 0.7807 0.8908 35 1 3.6101 3.2359 0.8910 36 1 3.6108 3.2363 -0.8889 37 1 4.4878 5.2214 2.6675 38 1 7.8466 2.3361 -3.2523 39 1 7.7437 0.9257 -2.1710 40 1 10.0608 1.3024 -3.0913 41 1 9.9966 1.3694 -1.3104 42 1 11.2046 3.8907 0.1947 43 1 9.7179 4.6209 0.8473 44 1 9.7352 2.9034 0.3808 45 1 6.6249 4.7376 -2.8209 46 1 8.0715 5.7716 -2.9047 47 1 8.1326 4.1040 -3.5235 48 1 7.7657 4.7476 0.6878 49 1 8.0107 6.1578 -0.3703 50 1 6.4812 5.2497 -0.4374 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000871343245.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:31 Heat of formation + Delta-G solvation = -185.787514 kcal Electronic energy + Delta-G solvation = -32419.173669 eV Core-core repulsion = 28217.747876 eV Total energy + Delta-G solvation = -4201.425793 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.07212 -41.48808 -40.17539 -38.20094 -37.56212 -36.69738 -33.99990 -33.75060 -32.62636 -31.97892 -29.25522 -28.42438 -27.88885 -26.76243 -25.60034 -25.06193 -23.27294 -21.92131 -21.45371 -20.73170 -19.24123 -18.65317 -18.17059 -17.72283 -17.60564 -17.45392 -16.86783 -16.61750 -16.28425 -16.09443 -15.62702 -15.55331 -15.17667 -14.88191 -14.83450 -14.46862 -14.14715 -14.04516 -13.76446 -13.70688 -13.43996 -13.32688 -13.17086 -13.05613 -12.92811 -12.79848 -12.71379 -12.62925 -12.53522 -12.37894 -12.25749 -12.08281 -12.05837 -11.87675 -11.75362 -11.58533 -11.56721 -11.40242 -11.07309 -10.74063 -10.23768 -10.09891 -9.30357 -8.13671 -5.94823 0.98176 1.15458 1.50539 1.59250 1.65951 1.69990 2.14562 2.44385 3.02540 3.17266 3.21017 3.62406 3.76765 3.85422 3.96645 4.08679 4.17535 4.19598 4.27703 4.30434 4.31798 4.33040 4.43431 4.52898 4.57261 4.63482 4.65078 4.70406 4.76485 4.82032 4.90042 4.92843 4.99506 5.01684 5.08316 5.12703 5.19740 5.25925 5.29960 5.32460 5.35506 5.46109 5.48103 5.57465 5.65594 5.82211 6.18536 6.51889 6.52358 6.72150 7.29065 7.71877 8.16066 8.88677 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011749 B = 0.004378 C = 0.003581 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2382.644585 B = 6394.751664 C = 7817.867388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.363 6.363 3 C 0.471 3.529 4 O -0.540 6.540 5 C -0.113 4.113 6 C 0.138 3.862 7 N -0.444 5.444 8 C -0.340 4.340 9 H 0.108 0.892 10 C 0.018 3.982 11 N -0.886 5.886 12 Si 0.958 3.042 13 H -0.269 1.269 14 H -0.299 1.299 15 H -0.254 1.254 16 C 0.482 3.518 17 O -0.628 6.628 18 C -0.083 4.083 19 H 0.113 0.887 20 C -0.096 4.096 21 C -0.159 4.159 22 C 0.376 3.624 23 O -0.498 6.498 24 C -0.122 4.122 25 H 0.090 0.910 26 C -0.142 4.142 27 C -0.027 4.027 28 C -0.143 4.143 29 C -0.119 4.119 30 H 0.058 0.942 31 H 0.138 0.862 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.029 0.971 37 H 0.265 0.735 38 H 0.059 0.941 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.129 0.871 42 H 0.070 0.930 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.043 0.957 46 H 0.056 0.944 47 H 0.052 0.948 48 H 0.076 0.924 49 H 0.045 0.955 50 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.527 -8.369 0.665 9.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.279 6.279 3 C 0.315 3.685 4 O -0.430 6.430 5 C -0.152 4.152 6 C 0.013 3.987 7 N -0.162 5.162 8 C -0.468 4.468 9 H 0.125 0.875 10 C -0.187 4.187 11 N -0.522 5.522 12 Si 0.783 3.217 13 H -0.195 1.195 14 H -0.226 1.226 15 H -0.178 1.178 16 C 0.273 3.727 17 O -0.515 6.515 18 C -0.104 4.104 19 H 0.131 0.869 20 C -0.134 4.134 21 C -0.197 4.197 22 C 0.255 3.745 23 O -0.374 6.374 24 C -0.141 4.141 25 H 0.109 0.891 26 C -0.199 4.199 27 C -0.027 4.027 28 C -0.200 4.200 29 C -0.176 4.176 30 H 0.077 0.923 31 H 0.156 0.844 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.047 0.953 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.100 0.900 40 H 0.117 0.883 41 H 0.147 0.853 42 H 0.089 0.911 43 H 0.091 0.909 44 H 0.096 0.904 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.071 0.929 48 H 0.094 0.906 49 H 0.064 0.936 50 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges 4.317 -7.768 -0.138 8.888 hybrid contribution -0.837 0.658 0.771 1.315 sum 3.480 -7.110 0.633 7.941 Atomic orbital electron populations 1.23563 0.74936 1.05812 1.02341 1.86509 1.25025 1.32490 1.83874 1.23986 0.92379 0.81186 0.70951 1.90648 1.67965 1.37561 1.46808 1.21705 0.86349 1.00954 1.06189 1.20771 0.83495 0.92553 1.01871 1.43498 1.03734 1.63509 1.05437 1.19547 1.11391 1.25728 0.90089 0.87470 1.25992 0.96715 0.93171 1.02782 1.70049 1.31850 1.16488 1.33831 0.85467 0.77788 0.79616 0.78866 1.19458 1.22597 1.17798 1.20992 0.90644 0.77951 0.83112 1.90514 1.71488 1.56596 1.32946 1.21239 0.91304 0.96192 1.01626 0.86933 1.21399 0.93353 1.00296 0.98397 1.22315 0.95909 0.94837 1.06623 1.25212 0.77484 0.92054 0.79789 1.90359 1.28433 1.82268 1.36309 1.22031 0.94824 0.99615 0.97636 0.89122 1.21846 1.01665 1.03671 0.92749 1.20316 0.92689 0.94178 0.95565 1.21966 1.01252 1.00466 0.96296 1.21723 0.99242 0.97612 0.99063 0.92302 0.84425 0.92176 0.87847 0.86030 0.89748 0.95272 0.92563 0.92208 0.90002 0.88315 0.85346 0.91099 0.90862 0.90430 0.93811 0.92453 0.92936 0.90554 0.93553 0.95184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.59 10.56 113.37 1.20 1.78 16 2 O -0.36 -10.90 10.57 -51.37 -0.54 -11.44 16 3 C 0.47 17.37 7.96 71.23 0.57 17.94 16 4 O -0.54 -23.47 15.73 21.95 0.35 -23.12 16 5 C -0.11 -4.20 6.13 29.85 0.18 -4.01 16 6 C 0.14 6.32 4.28 86.38 0.37 6.69 16 7 N -0.44 -19.41 2.32 -635.53 -1.48 -20.89 16 8 C -0.34 -14.17 6.33 84.04 0.53 -13.64 16 9 H 0.11 4.01 6.47 -2.91 -0.02 3.99 16 10 C 0.02 0.77 4.78 84.93 0.41 1.18 16 11 N -0.89 -43.60 11.60 21.66 0.25 -43.35 16 12 Si 0.96 34.96 29.59 68.60 2.03 36.99 16 13 H -0.27 -9.53 7.11 99.48 0.71 -8.82 16 14 H -0.30 -11.70 7.11 99.48 0.71 -10.99 16 15 H -0.25 -8.65 7.11 99.48 0.71 -7.95 16 16 C 0.48 20.38 4.97 87.66 0.44 20.81 16 17 O -0.63 -30.33 14.46 -3.08 -0.04 -30.38 16 18 C -0.08 -2.72 1.26 -11.57 -0.01 -2.74 16 19 H 0.11 3.41 4.27 -2.39 -0.01 3.40 16 20 C -0.10 -2.73 4.60 30.66 0.14 -2.59 16 21 C -0.16 -3.59 5.89 30.11 0.18 -3.41 16 22 C 0.38 10.29 5.08 29.46 0.15 10.44 16 23 O -0.50 -16.44 17.89 -1.46 -0.03 -16.47 16 24 C -0.12 -3.26 2.27 -11.14 -0.03 -3.29 16 25 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 26 C -0.14 -3.17 8.39 71.98 0.60 -2.56 16 27 C -0.03 -0.86 0.33 -51.97 -0.02 -0.88 16 28 C -0.14 -4.99 7.52 71.98 0.54 -4.45 16 29 C -0.12 -4.36 6.42 71.98 0.46 -3.89 16 30 H 0.06 1.33 8.13 -2.38 -0.02 1.31 16 31 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.06 1.35 8.13 -2.39 -0.02 1.33 16 33 H 0.10 3.68 8.14 -2.39 -0.02 3.66 16 34 H 0.12 4.08 8.14 -2.38 -0.02 4.06 16 35 H 0.08 4.30 5.72 -2.39 -0.01 4.28 16 36 H 0.03 1.50 7.38 -2.38 -0.02 1.48 16 37 H 0.26 12.77 8.31 -92.71 -0.77 12.00 16 38 H 0.06 1.92 6.03 -2.39 -0.01 1.91 16 39 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 40 H 0.10 2.02 8.14 -2.38 -0.02 2.00 16 41 H 0.13 2.17 7.80 -2.39 -0.02 2.15 16 42 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.07 1.71 6.61 -2.39 -0.02 1.69 16 44 H 0.08 1.59 5.95 -2.39 -0.01 1.57 16 45 H 0.04 1.81 6.40 -2.38 -0.02 1.80 16 46 H 0.06 1.83 8.14 -2.39 -0.02 1.81 16 47 H 0.05 1.76 5.60 -2.39 -0.01 1.75 16 48 H 0.08 2.80 5.38 -2.39 -0.01 2.78 16 49 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.03 1.35 7.26 -2.39 -0.02 1.33 16 Total: -1.00 -62.64 382.95 7.20 -55.44 By element: Atomic # 1 Polarization: 34.87 SS G_CDS: 0.95 Total: 35.83 kcal Atomic # 6 Polarization: 11.68 SS G_CDS: 5.71 Total: 17.39 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -1.22 Total: -64.24 kcal Atomic # 8 Polarization: -81.14 SS G_CDS: -0.27 Total: -81.41 kcal Atomic # 14 Polarization: 34.96 SS G_CDS: 2.03 Total: 36.99 kcal Total: -62.64 7.20 -55.44 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000871343245.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.347 kcal (2) G-P(sol) polarization free energy of solvation -62.641 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.988 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds