Wall clock time and date at job start Sat Apr 11 2020 05:45:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34228 * 117.00158 * 2 1 4 4 O 1.20826 * 119.99888 * 0.02562 * 3 2 1 5 5 C 1.50690 * 119.99754 * 179.97438 * 3 2 1 6 6 H 1.09005 * 110.75644 * 56.53171 * 5 3 2 7 7 C 1.54378 * 110.85206 * 292.82872 * 5 3 2 8 8 O 1.43236 * 107.59193 * 220.45285 * 7 5 3 9 9 C 1.43645 * 109.97075 * 358.29054 * 8 7 5 10 10 H 1.08999 * 110.30796 * 265.40653 * 9 8 7 11 11 C 1.53001 * 110.30614 * 143.34122 * 9 8 7 12 12 C 1.52993 * 109.47311 * 66.45518 * 11 9 8 13 13 C 1.50702 * 109.47123 * 179.97438 * 12 11 9 14 14 O 1.21279 * 120.00026 * 359.97438 * 13 12 11 15 15 N 1.34775 * 120.00021 * 179.97438 * 13 12 11 16 16 C 1.46501 * 120.00473 * 180.02562 * 15 13 12 17 17 C 1.50697 * 109.46926 * 89.99854 * 16 15 13 18 18 H 1.07997 * 120.00344 * 0.02562 * 17 16 15 19 19 C 1.37880 * 119.99788 * 180.02562 * 17 16 15 20 20 N 1.31518 * 119.99933 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00262 * 180.02562 * 19 17 16 22 22 H 1.48505 * 109.46890 * 359.97438 * 21 19 17 23 23 H 1.48490 * 109.47238 * 119.99551 * 21 19 17 24 24 H 1.48492 * 109.47114 * 239.99810 * 21 19 17 25 25 C 1.46503 * 119.99943 * 0.02562 * 15 13 12 26 26 C 1.53004 * 109.46925 * 89.99859 * 25 15 13 27 27 C 1.53004 * 117.49726 * 243.61677 * 26 25 15 28 28 C 1.52997 * 60.00327 * 252.51395 * 27 26 25 29 29 C 1.54944 * 105.13606 * 24.42620 * 9 8 7 30 30 H 1.09005 * 109.47482 * 299.99952 * 1 2 3 31 31 H 1.08998 * 109.47215 * 59.99860 * 1 2 3 32 32 H 1.09001 * 109.47758 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.82735 * 100.94294 * 7 5 3 34 34 H 1.09000 * 109.82904 * 339.97469 * 7 5 3 35 35 H 1.09008 * 109.46663 * 186.45603 * 11 9 8 36 36 H 1.08999 * 109.47075 * 306.44812 * 11 9 8 37 37 H 1.08998 * 109.47384 * 299.99694 * 12 11 9 38 38 H 1.08999 * 109.47627 * 59.99632 * 12 11 9 39 39 H 1.08998 * 109.47340 * 210.00567 * 16 15 13 40 40 H 1.09010 * 109.46448 * 330.00369 * 16 15 13 41 41 H 0.96999 * 120.00267 * 180.02562 * 20 19 17 42 42 H 1.09001 * 109.47264 * 209.99914 * 25 15 13 43 43 H 1.08993 * 109.47527 * 329.99923 * 25 15 13 44 44 H 1.08999 * 115.55034 * 29.33422 * 26 25 15 45 45 H 1.09000 * 117.49677 * 0.02562 * 27 26 25 46 46 H 1.09001 * 117.49298 * 145.01958 * 27 26 25 47 47 H 1.09002 * 117.50233 * 252.51544 * 28 27 26 48 48 H 1.09002 * 117.51788 * 107.48022 * 28 27 26 49 49 H 1.09000 * 111.12659 * 81.47422 * 29 9 8 50 50 H 1.09000 * 111.12286 * 205.63327 * 29 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5663 1.2747 0.0006 6 1 3.9818 0.7334 -0.8494 7 6 4.1437 0.7448 1.3306 8 8 5.2251 1.6056 1.7065 9 6 5.4146 2.6202 0.7075 10 1 6.1805 2.3120 -0.0042 11 6 5.8041 3.9460 1.3645 12 6 7.1845 3.8092 2.0099 13 6 7.5684 5.1152 2.6564 14 8 6.8125 6.0623 2.6055 15 7 8.7516 5.2308 3.2912 16 6 9.1247 6.5002 3.9202 17 6 8.6433 6.5138 5.3482 18 1 8.1130 5.6619 5.7474 19 6 8.8800 7.6138 6.1450 20 7 9.5263 8.6511 5.6590 21 14 8.2841 7.6305 7.9153 22 1 7.5901 6.3525 8.2160 23 1 9.4452 7.7902 8.8270 24 1 7.3425 8.7621 8.1100 25 6 9.6649 4.0869 3.3523 26 6 10.6013 4.1168 2.1426 27 6 10.5069 2.9585 1.1474 28 6 11.7125 3.0666 2.0832 29 6 4.0423 2.7530 0.0004 30 1 -0.3634 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3635 -1.0276 -0.0005 33 1 4.5110 -0.2726 1.1949 34 1 3.3729 0.7612 2.1010 35 1 5.8324 4.7312 0.6090 36 1 5.0698 4.2027 2.1279 37 1 7.1562 3.0240 2.7654 38 1 7.9188 3.5524 1.2465 39 1 10.2089 6.6104 3.9011 40 1 8.6659 7.3247 3.3743 41 1 9.6932 9.4248 6.2196 42 1 10.2531 4.1400 4.2684 43 1 9.0893 3.1614 3.3432 44 1 10.8227 5.1068 1.7438 45 1 9.7775 2.1755 1.3542 46 1 10.6660 3.1865 0.0934 47 1 12.6647 3.3656 1.6450 48 1 11.7766 2.3547 2.9061 49 1 3.3640 3.3842 0.5745 50 1 4.1591 3.1281 -1.0163 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874359047.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:03 Heat of formation + Delta-G solvation = -150.011920 kcal Electronic energy + Delta-G solvation = -29837.046936 eV Core-core repulsion = 25637.172489 eV Total energy + Delta-G solvation = -4199.874447 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.17178 -39.60796 -38.98271 -37.12503 -36.88384 -34.44000 -33.42184 -32.81752 -32.43875 -29.42452 -28.11313 -27.54892 -26.08620 -24.46026 -23.89256 -22.31983 -22.26184 -21.14327 -20.66904 -20.50370 -18.23257 -18.09231 -17.45898 -17.12275 -16.46705 -16.37673 -16.35799 -15.67605 -15.30606 -14.96930 -14.83215 -14.46885 -14.24994 -14.11109 -13.79755 -13.63882 -13.40560 -12.91784 -12.79461 -12.55942 -12.37498 -12.29941 -12.00716 -11.77155 -11.69372 -11.46263 -11.38030 -11.27282 -11.23584 -11.19849 -10.96956 -10.88118 -10.80337 -10.68414 -10.54129 -10.28785 -10.03813 -9.75972 -9.71183 -9.54132 -8.76809 -8.38978 -7.59391 -5.99638 -4.03720 1.73864 2.21289 3.33066 3.40452 3.44449 3.50714 3.55493 3.81468 3.86461 4.07250 4.33478 4.45476 4.49438 4.63268 4.67138 4.69973 4.77414 4.89246 4.93447 5.05037 5.08127 5.11123 5.22355 5.31166 5.33605 5.34927 5.43183 5.45660 5.55328 5.60604 5.68040 5.71775 5.83620 5.90200 5.95023 5.96433 6.02947 6.15602 6.21587 6.26301 6.44685 6.51980 6.78588 7.14224 7.29216 7.50907 7.62951 7.97689 8.29662 8.51727 8.96840 9.19812 9.61391 11.08455 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011327 B = 0.002537 C = 0.002204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2471.386432 B =11035.526681 C =12698.685261 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.358 6.358 3 C 0.471 3.529 4 O -0.496 6.496 5 C -0.121 4.121 6 H 0.123 0.877 7 C 0.069 3.931 8 O -0.368 6.368 9 C 0.082 3.918 10 H 0.078 0.922 11 C -0.102 4.102 12 C -0.138 4.138 13 C 0.506 3.494 14 O -0.545 6.545 15 N -0.596 5.596 16 C 0.245 3.755 17 C -0.522 4.522 18 H 0.057 0.943 19 C 0.060 3.940 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.283 1.283 25 C 0.143 3.857 26 C -0.164 4.164 27 C -0.185 4.185 28 C -0.177 4.177 29 C -0.137 4.137 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.083 0.917 34 H 0.072 0.928 35 H 0.084 0.916 36 H 0.079 0.921 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.031 0.969 40 H 0.042 0.958 41 H 0.262 0.738 42 H 0.085 0.915 43 H 0.069 0.931 44 H 0.107 0.893 45 H 0.094 0.906 46 H 0.089 0.911 47 H 0.091 0.909 48 H 0.094 0.906 49 H 0.098 0.902 50 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.217 -21.243 -14.682 27.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.275 6.275 3 C 0.313 3.687 4 O -0.383 6.383 5 C -0.141 4.141 6 H 0.141 0.859 7 C -0.008 4.008 8 O -0.287 6.287 9 C 0.025 3.975 10 H 0.096 0.904 11 C -0.139 4.139 12 C -0.178 4.178 13 C 0.294 3.706 14 O -0.423 6.423 15 N -0.327 5.327 16 C 0.126 3.874 17 C -0.561 4.561 18 H 0.076 0.924 19 C -0.142 4.142 20 N -0.535 5.535 21 Si 0.725 3.275 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.209 1.209 25 C 0.018 3.982 26 C -0.183 4.183 27 C -0.222 4.222 28 C -0.215 4.215 29 C -0.174 4.174 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.121 0.879 33 H 0.101 0.899 34 H 0.090 0.910 35 H 0.102 0.898 36 H 0.097 0.903 37 H 0.109 0.891 38 H 0.105 0.895 39 H 0.049 0.951 40 H 0.060 0.940 41 H 0.071 0.929 42 H 0.103 0.897 43 H 0.087 0.913 44 H 0.125 0.875 45 H 0.112 0.888 46 H 0.107 0.893 47 H 0.109 0.891 48 H 0.112 0.888 49 H 0.117 0.883 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -8.664 -20.254 -14.447 26.344 hybrid contribution -0.551 0.058 0.751 0.933 sum -9.215 -20.196 -13.695 26.083 Atomic orbital electron populations 1.23313 0.75969 1.03881 1.02782 1.86506 1.23727 1.33236 1.84037 1.23334 0.91410 0.81504 0.72425 1.90708 1.66863 1.36301 1.44410 1.22680 0.88261 1.00680 1.02442 0.85876 1.22953 0.90056 0.94729 0.93063 1.88510 1.51528 1.42783 1.45919 1.23139 0.95679 0.89098 0.89544 0.90438 1.21482 0.97079 0.94197 1.01177 1.21672 0.97677 0.97250 1.01180 1.20391 0.81704 0.89568 0.78982 1.90658 1.50387 1.40819 1.60410 1.48183 1.16764 1.14273 1.53514 1.19262 0.95743 0.79863 0.92515 1.21485 1.36346 1.02077 0.96237 0.92449 1.24939 0.95203 0.95302 0.98753 1.69946 1.41196 1.05889 1.36457 0.86459 0.78443 0.78115 0.84514 1.19790 1.21017 1.20934 1.21004 0.91322 0.89319 0.96563 1.22939 1.00652 0.95166 0.99543 1.23047 1.01354 1.01410 0.96402 1.22893 0.93454 1.02710 1.02432 1.23363 0.97250 0.93357 1.03444 0.91667 0.91786 0.87893 0.89894 0.91008 0.89766 0.90252 0.89072 0.89504 0.95081 0.93972 0.92858 0.89668 0.91286 0.87495 0.88789 0.89281 0.89091 0.88777 0.88318 0.88833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 10.56 101.05 1.07 1.27 16 2 O -0.36 -3.00 10.56 -39.25 -0.41 -3.41 16 3 C 0.47 4.61 7.13 36.00 0.26 4.87 16 4 O -0.50 -6.38 15.44 -18.75 -0.29 -6.67 16 5 C -0.12 -0.97 3.50 -89.83 -0.31 -1.29 16 6 H 0.12 0.67 8.14 -51.93 -0.42 0.24 16 7 C 0.07 0.60 7.39 37.88 0.28 0.88 16 8 O -0.37 -4.26 10.69 -35.23 -0.38 -4.64 16 9 C 0.08 0.86 3.43 -25.70 -0.09 0.77 16 10 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 11 C -0.10 -1.40 4.25 -26.73 -0.11 -1.51 16 12 C -0.14 -2.07 4.17 -27.89 -0.12 -2.18 16 13 C 0.51 10.62 7.67 -10.98 -0.08 10.53 16 14 O -0.54 -13.85 15.56 5.56 0.09 -13.76 16 15 N -0.60 -12.71 2.46 -175.05 -0.43 -13.14 16 16 C 0.25 6.49 5.16 -5.19 -0.03 6.46 16 17 C -0.52 -15.05 9.39 -34.44 -0.32 -15.38 16 18 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 19 C 0.06 1.73 5.46 -17.82 -0.10 1.64 16 20 N -0.90 -26.99 13.29 55.43 0.74 -26.25 16 21 Si 0.90 22.27 29.54 -169.99 -5.02 17.25 16 22 H -0.27 -6.70 7.11 56.52 0.40 -6.30 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 H -0.28 -7.04 7.11 56.52 0.40 -6.64 16 25 C 0.14 2.34 5.49 -4.04 -0.02 2.32 16 26 C -0.16 -2.28 5.95 -90.61 -0.54 -2.82 16 27 C -0.19 -2.02 9.18 -26.73 -0.25 -2.26 16 28 C -0.18 -1.99 10.25 -26.73 -0.27 -2.27 16 29 C -0.14 -1.29 5.70 -24.48 -0.14 -1.43 16 30 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 31 H 0.06 0.38 8.13 -51.93 -0.42 -0.05 16 32 H 0.10 0.33 8.14 -51.93 -0.42 -0.10 16 33 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.07 0.65 7.81 -51.93 -0.41 0.25 16 35 H 0.08 1.16 8.10 -51.92 -0.42 0.74 16 36 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 37 H 0.09 1.33 7.16 -51.93 -0.37 0.96 16 38 H 0.09 1.10 6.84 -51.93 -0.36 0.75 16 39 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 40 H 0.04 1.26 7.42 -51.92 -0.39 0.88 16 41 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 42 H 0.09 1.48 8.07 -51.93 -0.42 1.06 16 43 H 0.07 0.98 6.17 -51.93 -0.32 0.66 16 44 H 0.11 1.69 8.14 -51.93 -0.42 1.26 16 45 H 0.09 0.93 7.87 -51.93 -0.41 0.52 16 46 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.10 1.14 7.29 -51.93 -0.38 0.77 16 50 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 LS Contribution 412.11 15.07 6.21 6.21 Total: -1.00 -35.65 412.11 -8.78 -44.43 By element: Atomic # 1 Polarization: 8.88 SS G_CDS: -8.50 Total: 0.38 kcal Atomic # 6 Polarization: 0.39 SS G_CDS: -0.78 Total: -0.39 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: 0.31 Total: -39.40 kcal Atomic # 8 Polarization: -27.49 SS G_CDS: -0.99 Total: -28.49 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -35.65 -8.78 -44.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874359047.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.578 kcal (2) G-P(sol) polarization free energy of solvation -35.654 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.434 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds