Wall clock time and date at job start Sat Apr 11 2020 05:45:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00073 * 2 1 4 4 C 1.53000 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47026 * 65.00054 * 4 3 2 6 6 C 1.46501 * 119.99804 * 269.99596 * 5 4 3 7 7 C 1.50700 * 109.47479 * 269.99886 * 6 5 4 8 8 H 1.08007 * 119.99569 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00343 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99582 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47157 * 90.00148 * 11 9 7 13 13 H 1.48501 * 109.47224 * 210.00207 * 11 9 7 14 14 H 1.48503 * 109.47565 * 330.00052 * 11 9 7 15 15 C 1.34770 * 120.00223 * 89.99768 * 5 4 3 16 16 O 1.21596 * 120.00123 * 0.02562 * 15 5 4 17 17 N 1.34777 * 120.00417 * 179.97438 * 15 5 4 18 18 C 1.40188 * 120.00657 * 184.58969 * 17 15 5 19 19 C 1.38824 * 119.99276 * 144.88313 * 18 17 15 20 20 C 1.38128 * 120.04332 * 179.70049 * 19 18 17 21 21 C 1.38798 * 120.01444 * 0.60005 * 20 19 18 22 22 N 1.40096 * 120.00959 * 179.69631 * 21 20 19 23 23 C 1.46901 * 110.99774 * 59.72450 * 22 21 20 24 24 C 1.46900 * 110.99693 * 295.77084 * 22 21 20 25 25 C 1.39055 * 119.97851 * 359.42455 * 21 20 19 26 26 F 1.35097 * 120.02028 * 180.30134 * 25 21 20 27 27 C 1.38247 * 119.95756 * 0.27123 * 25 21 20 28 28 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46965 * 300.00221 * 1 2 3 30 30 H 1.08996 * 109.47228 * 60.00382 * 1 2 3 31 31 H 1.09000 * 109.47515 * 60.00186 * 3 2 1 32 32 H 1.08995 * 109.46909 * 299.99706 * 3 2 1 33 33 H 1.08997 * 109.47657 * 304.99629 * 4 3 2 34 34 H 1.09004 * 109.47273 * 184.99309 * 4 3 2 35 35 H 1.08995 * 109.47041 * 30.00125 * 6 5 4 36 36 H 1.09005 * 109.46695 * 149.99971 * 6 5 4 37 37 H 0.97004 * 119.99762 * 179.97438 * 10 9 7 38 38 H 0.97005 * 119.99821 * 4.59189 * 17 15 5 39 39 H 1.08003 * 119.98045 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.99268 * 180.29557 * 20 19 18 41 41 H 1.09000 * 109.46783 * 60.00416 * 23 22 21 42 42 H 1.09002 * 109.47228 * 299.99951 * 23 22 21 43 43 H 1.08993 * 109.46560 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.46754 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47453 * 299.99684 * 24 22 21 46 46 H 1.08996 * 109.47302 * 60.00482 * 24 22 21 47 47 H 1.08003 * 120.00405 * 179.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3402 7 6 5.5017 -1.2983 -0.9412 8 1 6.2200 -0.5463 -0.6497 9 6 5.8610 -2.6294 -0.9472 10 7 4.9860 -3.5450 -1.3016 11 14 7.5904 -3.1321 -0.4519 12 1 7.6330 -3.3836 1.0111 13 1 7.9734 -4.3695 -1.1782 14 1 8.5400 -2.0430 -0.7947 15 6 4.2633 1.3328 -2.3200 16 8 4.1562 2.5417 -2.2457 17 7 4.6696 0.7618 -3.4712 18 6 5.0599 1.5644 -4.5523 19 6 6.0890 1.1512 -5.3875 20 6 6.4702 1.9384 -6.4566 21 6 5.8329 3.1492 -6.6895 22 7 6.2240 3.9504 -7.7701 23 6 6.0598 3.2348 -9.0425 24 6 7.6062 4.4196 -7.6045 25 6 4.8024 3.5641 -5.8531 26 9 4.1775 4.7397 -6.0825 27 6 4.4174 2.7726 -4.7870 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0901 35 1 3.3858 -1.3632 -0.6713 36 1 3.9138 -1.2123 -2.3644 37 1 5.2389 -4.4815 -1.3062 38 1 4.6920 -0.2046 -3.5518 39 1 6.5883 0.2113 -5.2043 40 1 7.2677 1.6138 -7.1087 41 1 5.0131 2.9597 -9.1721 42 1 6.6740 2.3343 -9.0348 43 1 6.3701 3.8797 -9.8645 44 1 7.8842 5.0388 -8.4572 45 1 7.6836 5.0058 -6.6888 46 1 8.2763 3.5621 -7.5447 47 1 3.6174 3.0943 -4.1367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000880919869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:05 Heat of formation + Delta-G solvation = -69.538331 kcal Electronic energy + Delta-G solvation = -30125.184582 eV Core-core repulsion = 25837.632177 eV Total energy + Delta-G solvation = -4287.552404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -48.52319 -40.33510 -39.17915 -37.63213 -36.65944 -34.98348 -33.76468 -32.66670 -30.43146 -29.99409 -28.46395 -27.71752 -27.08034 -25.93352 -24.52296 -22.99282 -22.69200 -22.61080 -21.01591 -19.43653 -18.09453 -17.26922 -16.73741 -16.54862 -16.23090 -15.98999 -15.80324 -15.55783 -15.34547 -14.87286 -14.65426 -14.57198 -14.50433 -14.38679 -14.06460 -13.71030 -13.36791 -13.06166 -12.67491 -12.58857 -12.49662 -12.15972 -12.04320 -11.87194 -11.84111 -11.74947 -11.53811 -11.50653 -11.32072 -11.01732 -10.91799 -10.58860 -10.22974 -9.88947 -9.78161 -9.50168 -9.33289 -8.64938 -8.61993 -8.58375 -8.00094 -7.59132 -6.21118 -4.29331 1.25258 1.37597 3.15614 3.20001 3.27597 3.31413 3.49899 3.74083 3.94173 4.14581 4.27121 4.40853 4.64321 4.89589 5.02167 5.11873 5.16826 5.21403 5.34354 5.37819 5.38801 5.45156 5.48480 5.61907 5.64608 5.68533 5.70259 5.73233 5.77900 5.84426 5.89736 6.00579 6.12405 6.33809 6.35265 6.43076 6.66306 6.73964 6.75695 7.05830 7.16819 7.30047 7.38531 7.45830 7.70720 7.77160 8.02379 8.47194 8.79988 9.12891 9.39179 10.84913 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003586 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.416005 B = 7806.291685 C = 9942.031876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.046 3.954 4 C 0.139 3.861 5 N -0.599 5.599 6 C 0.241 3.759 7 C -0.542 4.542 8 H 0.061 0.939 9 C 0.066 3.934 10 N -0.889 5.889 11 Si 0.896 3.104 12 H -0.279 1.279 13 H -0.285 1.285 14 H -0.274 1.274 15 C 0.707 3.293 16 O -0.606 6.606 17 N -0.680 5.680 18 C 0.214 3.786 19 C -0.152 4.152 20 C -0.100 4.100 21 C 0.013 3.987 22 N -0.503 5.503 23 C 0.029 3.971 24 C 0.029 3.971 25 C 0.142 3.858 26 F -0.130 7.130 27 C -0.159 4.159 28 H 0.082 0.918 29 H 0.034 0.966 30 H 0.035 0.965 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.089 0.911 34 H 0.089 0.911 35 H 0.055 0.945 36 H 0.025 0.975 37 H 0.265 0.735 38 H 0.421 0.579 39 H 0.135 0.865 40 H 0.128 0.872 41 H 0.070 0.930 42 H 0.031 0.969 43 H 0.070 0.930 44 H 0.071 0.929 45 H 0.070 0.930 46 H 0.031 0.969 47 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.445 9.131 -8.593 12.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.294 6.294 3 C -0.032 4.032 4 C 0.015 3.985 5 N -0.332 5.332 6 C 0.122 3.878 7 C -0.581 4.581 8 H 0.079 0.921 9 C -0.137 4.137 10 N -0.527 5.527 11 Si 0.723 3.277 12 H -0.205 1.205 13 H -0.211 1.211 14 H -0.199 1.199 15 C 0.409 3.591 16 O -0.487 6.487 17 N -0.329 5.329 18 C 0.117 3.883 19 C -0.174 4.174 20 C -0.120 4.120 21 C -0.082 4.082 22 N -0.224 5.224 23 C -0.118 4.118 24 C -0.118 4.118 25 C 0.121 3.879 26 F -0.109 7.109 27 C -0.181 4.181 28 H 0.101 0.899 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.069 0.931 32 H 0.067 0.933 33 H 0.107 0.893 34 H 0.107 0.893 35 H 0.073 0.927 36 H 0.043 0.957 37 H 0.075 0.925 38 H 0.262 0.738 39 H 0.153 0.847 40 H 0.146 0.854 41 H 0.088 0.912 42 H 0.050 0.950 43 H 0.089 0.911 44 H 0.089 0.911 45 H 0.089 0.911 46 H 0.050 0.950 47 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -1.786 9.999 -8.472 13.227 hybrid contribution 1.201 -1.303 0.282 1.794 sum -0.585 8.696 -8.190 11.960 Atomic orbital electron populations 1.22676 0.82172 1.02368 0.99180 1.88049 1.18658 1.27479 1.95213 1.23071 0.95358 0.84920 0.99855 1.21258 0.90876 0.99508 0.86863 1.47351 1.66996 1.09276 1.09551 1.19410 0.97633 0.72883 0.97916 1.21552 0.97268 0.92452 1.46802 0.92117 1.24931 0.97552 0.96329 0.94890 1.69933 1.34358 1.01228 1.47135 0.86530 0.84291 0.78052 0.78794 1.20485 1.21104 1.19852 1.15833 0.77910 0.84901 0.80429 1.90818 1.61571 1.12502 1.83826 1.42950 1.68319 1.10708 1.10879 1.17319 0.92316 0.91188 0.87521 1.20898 0.97165 1.02309 0.97038 1.21115 0.99535 0.93845 0.97527 1.18623 0.99229 0.94202 0.96160 1.59573 1.23707 1.38317 1.00823 1.22454 1.02202 0.96828 0.90354 1.22450 0.86864 0.99664 1.02828 1.17274 0.92814 0.82781 0.95024 1.91470 1.80833 1.44491 1.94076 1.21259 1.03468 0.95621 0.97796 0.89899 0.94707 0.94667 0.93120 0.93316 0.89277 0.89260 0.92681 0.95689 0.92512 0.73814 0.84748 0.85408 0.91150 0.95024 0.91083 0.91072 0.91117 0.95042 0.82629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 11.01 101.05 1.11 1.55 16 2 O -0.38 -6.53 9.53 -35.23 -0.34 -6.87 16 3 C 0.05 0.73 6.28 37.16 0.23 0.96 16 4 C 0.14 2.50 5.81 -4.04 -0.02 2.47 16 5 N -0.60 -12.34 2.42 -180.80 -0.44 -12.78 16 6 C 0.24 5.58 4.79 -5.19 -0.02 5.56 16 7 C -0.54 -13.70 9.39 -34.44 -0.32 -14.02 16 8 H 0.06 1.58 7.81 -52.48 -0.41 1.17 16 9 C 0.07 1.71 5.46 -17.82 -0.10 1.61 16 10 N -0.89 -23.86 13.29 55.43 0.74 -23.13 16 11 Si 0.90 20.16 29.54 -169.99 -5.02 15.14 16 12 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 13 H -0.29 -6.37 7.11 56.52 0.40 -5.97 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 C 0.71 14.60 8.12 -86.92 -0.71 13.89 16 16 O -0.61 -13.22 13.36 5.28 0.07 -13.15 16 17 N -0.68 -12.73 5.22 -14.18 -0.07 -12.80 16 18 C 0.21 3.65 6.30 -83.60 -0.53 3.12 16 19 C -0.15 -2.22 9.96 -39.40 -0.39 -2.61 16 20 C -0.10 -1.29 8.57 -39.41 -0.34 -1.63 16 21 C 0.01 0.19 4.75 -83.57 -0.40 -0.21 16 22 N -0.50 -6.22 4.83 -186.72 -0.90 -7.12 16 23 C 0.03 0.28 9.34 60.07 0.56 0.84 16 24 C 0.03 0.29 9.39 60.06 0.56 0.86 16 25 C 0.14 2.29 7.31 -39.27 -0.29 2.00 16 26 F -0.13 -2.17 17.07 2.25 0.04 -2.13 16 27 C -0.16 -2.75 8.67 -39.36 -0.34 -3.09 16 28 H 0.08 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.03 0.39 8.14 -51.93 -0.42 -0.04 16 30 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.09 1.61 8.07 -51.93 -0.42 1.19 16 34 H 0.09 1.54 7.42 -51.93 -0.39 1.15 16 35 H 0.06 1.39 7.11 -51.93 -0.37 1.02 16 36 H 0.03 0.59 6.30 -51.93 -0.33 0.27 16 37 H 0.27 6.80 8.31 -40.82 -0.34 6.46 16 38 H 0.42 7.87 6.52 -40.82 -0.27 7.60 16 39 H 0.13 1.81 8.06 -52.48 -0.42 1.38 16 40 H 0.13 1.36 7.02 -52.49 -0.37 0.99 16 41 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.03 0.28 7.11 -51.93 -0.37 -0.09 16 43 H 0.07 0.57 8.12 -51.93 -0.42 0.14 16 44 H 0.07 0.59 8.12 -51.93 -0.42 0.17 16 45 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 46 H 0.03 0.30 7.36 -51.93 -0.38 -0.09 16 47 H 0.16 2.93 6.22 -52.48 -0.33 2.60 16 LS Contribution 392.26 15.07 5.91 5.91 Total: -1.00 -29.47 392.26 -7.98 -37.45 By element: Atomic # 1 Polarization: 15.15 SS G_CDS: -6.98 Total: 8.17 kcal Atomic # 6 Polarization: 12.29 SS G_CDS: -0.99 Total: 11.31 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -0.68 Total: -55.83 kcal Atomic # 8 Polarization: -19.75 SS G_CDS: -0.27 Total: -20.01 kcal Atomic # 9 Polarization: -2.17 SS G_CDS: 0.04 Total: -2.13 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -29.47 -7.98 -37.45 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880919869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.089 kcal (2) G-P(sol) polarization free energy of solvation -29.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.982 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds