Wall clock time and date at job start Sat Apr 11 2020 05:45:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.42901 * 114.00073 * 2 1 4 4 C 1.53000 * 109.46985 * 179.97438 * 3 2 1 5 5 N 1.46501 * 109.47026 * 65.00054 * 4 3 2 6 6 C 1.46501 * 119.99804 * 269.99596 * 5 4 3 7 7 C 1.50700 * 109.47479 * 269.99886 * 6 5 4 8 8 H 1.08007 * 119.99569 * 0.02562 * 7 6 5 9 9 C 1.37876 * 120.00343 * 179.97438 * 7 6 5 10 10 N 1.31513 * 119.99582 * 0.02562 * 9 7 6 11 11 Si 1.86791 * 119.99954 * 180.02562 * 9 7 6 12 12 H 1.48503 * 109.47157 * 90.00148 * 11 9 7 13 13 H 1.48501 * 109.47224 * 210.00207 * 11 9 7 14 14 H 1.48503 * 109.47565 * 330.00052 * 11 9 7 15 15 C 1.34770 * 120.00223 * 89.99768 * 5 4 3 16 16 O 1.21596 * 120.00123 * 0.02562 * 15 5 4 17 17 N 1.34777 * 120.00417 * 179.97438 * 15 5 4 18 18 C 1.40188 * 120.00657 * 184.58969 * 17 15 5 19 19 C 1.38824 * 119.99276 * 144.88313 * 18 17 15 20 20 C 1.38128 * 120.04332 * 179.70049 * 19 18 17 21 21 C 1.38798 * 120.01444 * 0.60005 * 20 19 18 22 22 N 1.40096 * 120.00959 * 179.69631 * 21 20 19 23 23 C 1.46901 * 110.99774 * 59.72450 * 22 21 20 24 24 C 1.46900 * 110.99693 * 295.77084 * 22 21 20 25 25 C 1.39055 * 119.97851 * 359.42455 * 21 20 19 26 26 F 1.35097 * 120.02028 * 180.30134 * 25 21 20 27 27 C 1.38247 * 119.95756 * 0.27123 * 25 21 20 28 28 H 1.08999 * 109.47249 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46965 * 300.00221 * 1 2 3 30 30 H 1.08996 * 109.47228 * 60.00382 * 1 2 3 31 31 H 1.09000 * 109.47515 * 60.00186 * 3 2 1 32 32 H 1.08995 * 109.46909 * 299.99706 * 3 2 1 33 33 H 1.08997 * 109.47657 * 304.99629 * 4 3 2 34 34 H 1.09004 * 109.47273 * 184.99309 * 4 3 2 35 35 H 1.08995 * 109.47041 * 30.00125 * 6 5 4 36 36 H 1.09005 * 109.46695 * 149.99971 * 6 5 4 37 37 H 0.97004 * 119.99762 * 179.97438 * 10 9 7 38 38 H 0.97005 * 119.99821 * 4.59189 * 17 15 5 39 39 H 1.08003 * 119.98045 * 0.02562 * 19 18 17 40 40 H 1.08002 * 119.99268 * 180.29557 * 20 19 18 41 41 H 1.09000 * 109.46783 * 60.00416 * 23 22 21 42 42 H 1.09002 * 109.47228 * 299.99951 * 23 22 21 43 43 H 1.08993 * 109.46560 * 179.97438 * 23 22 21 44 44 H 1.08995 * 109.46754 * 179.97438 * 24 22 21 45 45 H 1.08995 * 109.47453 * 299.99684 * 24 22 21 46 46 H 1.08996 * 109.47302 * 60.00482 * 24 22 21 47 47 H 1.08003 * 120.00405 * 179.97438 * 27 25 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.1062 -0.8926 -1.3402 7 6 5.5017 -1.2983 -0.9412 8 1 6.2200 -0.5463 -0.6497 9 6 5.8610 -2.6294 -0.9472 10 7 4.9860 -3.5450 -1.3016 11 14 7.5904 -3.1321 -0.4519 12 1 7.6330 -3.3836 1.0111 13 1 7.9734 -4.3695 -1.1782 14 1 8.5400 -2.0430 -0.7947 15 6 4.2633 1.3328 -2.3200 16 8 4.1562 2.5417 -2.2457 17 7 4.6696 0.7618 -3.4712 18 6 5.0599 1.5644 -4.5523 19 6 6.0890 1.1512 -5.3875 20 6 6.4702 1.9384 -6.4566 21 6 5.8329 3.1492 -6.6895 22 7 6.2240 3.9504 -7.7701 23 6 6.0598 3.2348 -9.0425 24 6 7.6062 4.4196 -7.6045 25 6 4.8024 3.5641 -5.8531 26 9 4.1775 4.7397 -6.0825 27 6 4.4174 2.7726 -4.7870 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 -0.3633 0.5137 -0.8900 31 1 1.6886 1.8464 0.8900 32 1 1.6886 1.8463 -0.8900 33 1 3.8508 0.5685 0.8427 34 1 3.9785 2.1765 0.0901 35 1 3.3858 -1.3632 -0.6713 36 1 3.9138 -1.2123 -2.3644 37 1 5.2389 -4.4815 -1.3062 38 1 4.6920 -0.2046 -3.5518 39 1 6.5883 0.2113 -5.2043 40 1 7.2677 1.6138 -7.1087 41 1 5.0131 2.9597 -9.1721 42 1 6.6740 2.3343 -9.0348 43 1 6.3701 3.8797 -9.8645 44 1 7.8842 5.0388 -8.4572 45 1 7.6836 5.0058 -6.6888 46 1 8.2763 3.5621 -7.5447 47 1 3.6174 3.0943 -4.1367 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000880919869.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:04 Heat of formation + Delta-G solvation = -87.103667 kcal Electronic energy + Delta-G solvation = -30125.946272 eV Core-core repulsion = 25837.632177 eV Total energy + Delta-G solvation = -4288.314095 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.80272 -41.78262 -40.41068 -38.89106 -37.84415 -36.65497 -35.11288 -34.57699 -31.64129 -31.39608 -29.79022 -28.76186 -28.47772 -27.12371 -25.65642 -24.84062 -23.91597 -23.88827 -22.18269 -20.94009 -19.50735 -18.84082 -18.42966 -17.78487 -17.48059 -17.38874 -17.08256 -16.73992 -16.68544 -16.46931 -16.15811 -15.89056 -15.62502 -15.36639 -15.31991 -15.03681 -14.88882 -14.39244 -14.09364 -13.74200 -13.65075 -13.52667 -13.35801 -13.11543 -13.06804 -12.90367 -12.77282 -12.75742 -12.63608 -12.61088 -12.44109 -12.14873 -11.92084 -11.68713 -11.28138 -11.04820 -10.62418 -10.53771 -9.86161 -9.57942 -9.51779 -9.00475 -8.17836 -6.33401 0.03685 0.16912 1.42252 1.44961 1.53570 1.69719 2.04370 2.41060 2.59598 2.79461 2.92861 2.96003 3.12304 3.34584 3.78629 4.08042 4.14259 4.15794 4.21746 4.28147 4.38412 4.41660 4.43125 4.53112 4.55248 4.60366 4.64571 4.70257 4.74233 4.84038 4.88906 4.94648 4.95374 4.99702 5.01397 5.16231 5.21241 5.29395 5.41198 5.60358 5.76559 5.80847 5.93577 6.05647 6.08605 6.29360 6.32466 6.68398 6.95339 7.37704 7.54224 8.86895 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009824 B = 0.003586 C = 0.002816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2849.416005 B = 7806.291685 C = 9942.031876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.408 6.408 3 C 0.054 3.946 4 C 0.133 3.867 5 N -0.603 5.603 6 C 0.262 3.738 7 C -0.548 4.548 8 H 0.051 0.949 9 C 0.026 3.974 10 N -0.916 5.916 11 Si 0.956 3.044 12 H -0.278 1.278 13 H -0.280 1.280 14 H -0.272 1.272 15 C 0.702 3.298 16 O -0.622 6.622 17 N -0.679 5.679 18 C 0.188 3.812 19 C -0.144 4.144 20 C -0.087 4.087 21 C 0.028 3.972 22 N -0.523 5.523 23 C 0.027 3.973 24 C 0.028 3.972 25 C 0.124 3.876 26 F -0.138 7.138 27 C -0.169 4.169 28 H 0.089 0.911 29 H 0.058 0.942 30 H 0.040 0.960 31 H 0.083 0.917 32 H 0.039 0.961 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.032 0.968 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.420 0.580 39 H 0.149 0.851 40 H 0.163 0.837 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.044 0.956 47 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.138 9.197 -9.804 13.444 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.328 6.328 3 C -0.023 4.023 4 C 0.010 3.990 5 N -0.336 5.336 6 C 0.141 3.859 7 C -0.587 4.587 8 H 0.069 0.931 9 C -0.175 4.175 10 N -0.555 5.555 11 Si 0.782 3.218 12 H -0.204 1.204 13 H -0.205 1.205 14 H -0.197 1.197 15 C 0.404 3.596 16 O -0.504 6.504 17 N -0.327 5.327 18 C 0.092 3.908 19 C -0.166 4.166 20 C -0.107 4.107 21 C -0.068 4.068 22 N -0.244 5.244 23 C -0.119 4.119 24 C -0.119 4.119 25 C 0.103 3.897 26 F -0.117 7.117 27 C -0.191 4.191 28 H 0.107 0.893 29 H 0.076 0.924 30 H 0.058 0.942 31 H 0.101 0.899 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.112 0.888 35 H 0.050 0.950 36 H 0.035 0.965 37 H 0.077 0.923 38 H 0.260 0.740 39 H 0.166 0.834 40 H 0.180 0.820 41 H 0.081 0.919 42 H 0.064 0.936 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.076 0.924 46 H 0.062 0.938 47 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges -0.205 10.089 -9.703 13.999 hybrid contribution 0.688 -1.254 0.576 1.542 sum 0.483 8.835 -9.127 12.712 Atomic orbital electron populations 1.22862 0.80092 1.03316 1.00547 1.87997 1.21060 1.28260 1.95475 1.22969 0.93747 0.84749 1.00862 1.21427 0.92630 0.99339 0.85626 1.47343 1.67365 1.08330 1.10540 1.18975 0.96050 0.74216 0.96666 1.21688 0.97857 0.92454 1.46680 0.93099 1.25597 1.00829 0.96287 0.94795 1.70023 1.35990 1.01532 1.47948 0.85591 0.80184 0.77709 0.78350 1.20354 1.20496 1.19682 1.15967 0.77969 0.84764 0.80854 1.90801 1.62386 1.13041 1.84198 1.42877 1.68277 1.10668 1.10882 1.17524 0.93876 0.91385 0.88024 1.21097 0.96030 1.02829 0.96594 1.21421 0.99547 0.92756 0.96975 1.18778 0.97755 0.94378 0.95850 1.59599 1.25218 1.38561 1.01063 1.22537 1.02153 0.97705 0.89515 1.22517 0.85753 1.00312 1.03284 1.17437 0.93962 0.82686 0.95613 1.91440 1.81186 1.44925 1.94145 1.21068 1.03462 0.96313 0.98270 0.89260 0.92367 0.94183 0.89872 0.94317 0.89735 0.88752 0.94962 0.96452 0.92325 0.74023 0.83362 0.81976 0.91947 0.93612 0.89011 0.88862 0.92418 0.93757 0.84994 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.72 11.01 113.37 1.25 1.96 16 2 O -0.41 -14.30 9.53 -148.98 -1.42 -15.72 16 3 C 0.05 1.73 6.28 71.98 0.45 2.18 16 4 C 0.13 4.87 5.81 86.38 0.50 5.37 16 5 N -0.60 -25.57 2.42 -844.19 -2.04 -27.62 16 6 C 0.26 12.46 4.79 85.63 0.41 12.87 16 7 C -0.55 -28.01 9.39 25.60 0.24 -27.77 16 8 H 0.05 2.67 7.81 -2.91 -0.02 2.64 16 9 C 0.03 1.32 5.46 84.65 0.46 1.78 16 10 N -0.92 -49.38 13.29 21.45 0.28 -49.10 16 11 Si 0.96 41.00 29.54 68.60 2.03 43.03 16 12 H -0.28 -11.81 7.11 99.48 0.71 -11.11 16 13 H -0.28 -11.67 7.11 99.48 0.71 -10.97 16 14 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 15 C 0.70 29.91 8.12 179.06 1.45 31.37 16 16 O -0.62 -28.03 13.36 -4.02 -0.05 -28.09 16 17 N -0.68 -26.08 5.22 -317.04 -1.66 -27.73 16 18 C 0.19 6.48 6.30 38.09 0.24 6.72 16 19 C -0.14 -3.98 9.96 22.38 0.22 -3.76 16 20 C -0.09 -2.02 8.57 22.38 0.19 -1.83 16 21 C 0.03 0.75 4.75 38.15 0.18 0.93 16 22 N -0.52 -11.66 4.83 -744.64 -3.59 -15.25 16 23 C 0.03 0.44 9.34 127.69 1.19 1.64 16 24 C 0.03 0.48 9.39 127.69 1.20 1.68 16 25 C 0.12 4.01 7.31 22.47 0.16 4.17 16 26 F -0.14 -4.69 17.07 44.97 0.77 -3.93 16 27 C -0.17 -6.02 8.67 22.41 0.19 -5.83 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.19 16 30 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.04 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.08 3.12 8.07 -2.39 -0.02 3.10 16 34 H 0.09 3.30 7.42 -2.38 -0.02 3.29 16 35 H 0.03 1.69 7.11 -2.39 -0.02 1.67 16 36 H 0.02 0.86 6.30 -2.38 -0.02 0.84 16 37 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 38 H 0.42 16.11 6.52 -92.70 -0.60 15.50 16 39 H 0.15 3.68 8.06 -2.91 -0.02 3.66 16 40 H 0.16 2.70 7.02 -2.91 -0.02 2.68 16 41 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 0.63 7.11 -2.39 -0.02 0.61 16 43 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 44 H 0.09 1.22 8.12 -2.39 -0.02 1.20 16 45 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 46 H 0.04 0.66 7.36 -2.39 -0.02 0.64 16 47 H 0.13 5.28 6.22 -2.91 -0.02 5.26 16 Total: -1.00 -63.90 392.26 3.05 -60.84 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.38 Total: 32.07 kcal Atomic # 6 Polarization: 23.13 SS G_CDS: 8.36 Total: 31.49 kcal Atomic # 7 Polarization: -112.69 SS G_CDS: -7.01 Total: -119.70 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -1.47 Total: -43.81 kcal Atomic # 9 Polarization: -4.69 SS G_CDS: 0.77 Total: -3.93 kcal Atomic # 14 Polarization: 41.00 SS G_CDS: 2.03 Total: 43.03 kcal Total: -63.90 3.05 -60.84 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000880919869.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.260 kcal (2) G-P(sol) polarization free energy of solvation -63.896 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds