Wall clock time and date at job start Sat Apr 11 2020 05:45:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99901 * 2 1 4 4 O 1.20827 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99977 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.45832 * 60.02527 * 5 3 2 7 7 C 1.53038 * 109.45760 * 300.06855 * 5 3 2 8 8 C 1.53196 * 109.30850 * 178.61422 * 7 5 3 9 9 N 1.46928 * 108.77671 * 54.63844 * 8 7 5 10 10 C 1.34774 * 120.63478 * 126.66577 * 9 8 7 11 11 O 1.21279 * 119.99704 * 353.56784 * 10 9 8 12 12 C 1.50696 * 120.00367 * 173.56842 * 10 9 8 13 13 H 1.08998 * 109.46941 * 35.76464 * 12 10 9 14 14 C 1.53008 * 109.47120 * 275.76966 * 12 10 9 15 15 C 1.50692 * 109.47370 * 155.76783 * 12 10 9 16 16 H 1.07999 * 120.00025 * 0.02562 * 15 12 10 17 17 C 1.37882 * 120.00282 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99430 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00215 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47489 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47243 * 120.00228 * 19 17 15 22 22 H 1.48504 * 109.47426 * 239.99934 * 19 17 15 23 23 C 1.46932 * 118.73674 * 306.38897 * 9 8 7 24 24 H 1.08989 * 109.58688 * 173.40070 * 23 9 8 25 25 C 1.53005 * 109.58496 * 293.82467 * 23 9 8 26 26 H 1.08999 * 109.87061 * 66.09178 * 25 23 9 27 27 C 1.54097 * 109.88024 * 187.10528 * 25 23 9 28 28 C 1.54804 * 104.18830 * 121.44821 * 27 25 23 29 29 C 1.55003 * 102.09446 * 20.88398 * 28 27 25 30 30 O 1.43750 * 109.87854 * 305.09176 * 25 23 9 31 31 C 1.53045 * 109.45776 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47596 * 300.00224 * 1 2 3 33 33 H 1.09003 * 109.46993 * 60.00431 * 1 2 3 34 34 H 1.09001 * 109.46632 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.49849 * 298.55910 * 7 5 3 36 36 H 1.08999 * 109.50246 * 58.63402 * 7 5 3 37 37 H 1.08997 * 109.58988 * 294.84358 * 8 7 5 38 38 H 1.09009 * 109.58543 * 174.42016 * 8 7 5 39 39 H 1.09001 * 109.47065 * 68.07123 * 14 12 10 40 40 H 1.08998 * 109.46774 * 188.07401 * 14 12 10 41 41 H 1.08999 * 109.46758 * 308.07315 * 14 12 10 42 42 H 0.97008 * 119.99527 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.49069 * 240.12954 * 27 25 23 44 44 H 1.09006 * 110.48242 * 2.64412 * 27 25 23 45 45 H 1.09004 * 110.90492 * 139.07985 * 28 27 25 46 46 H 1.09002 * 110.91554 * 262.64730 * 28 27 25 47 47 H 1.08997 * 110.61415 * 81.47044 * 29 28 27 48 48 H 1.09000 * 110.61806 * 204.31276 * 29 28 27 49 49 H 1.08989 * 109.49682 * 61.43532 * 31 5 3 50 50 H 1.09000 * 109.49310 * 301.33529 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9562 0.7809 -0.8894 7 6 4.1128 0.5798 1.2497 8 6 5.6437 0.6317 1.2295 9 7 6.0676 2.0309 1.0833 10 6 6.9378 2.5794 1.9542 11 8 7.2887 1.9568 2.9340 12 6 7.4747 3.9662 1.7104 13 1 6.6960 4.5839 1.2631 14 6 8.6728 3.8898 0.7617 15 6 7.9084 4.5742 3.0192 16 1 7.8059 4.0125 3.9359 17 6 8.4361 5.8478 3.0465 18 7 8.5604 6.5320 1.9303 19 14 8.9730 6.6018 4.6690 20 1 8.7295 5.6344 5.7691 21 1 10.4205 6.9277 4.6085 22 1 8.1963 7.8425 4.9194 23 6 5.5295 2.8190 -0.0339 24 1 5.8459 3.8572 0.0656 25 6 6.0419 2.2483 -1.3578 26 1 5.6332 1.2499 -1.5138 27 6 5.6294 3.1711 -2.5209 28 6 6.9713 3.5777 -3.1770 29 6 7.9232 2.4545 -2.6924 30 8 7.4782 2.1913 -1.3423 31 6 3.9999 2.7426 0.0011 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 3.7433 1.0886 2.1402 36 1 3.7837 -0.4592 1.2614 37 1 6.0181 0.0468 0.3894 38 1 6.0354 0.2269 2.1627 39 1 8.3333 3.5856 -0.2284 40 1 9.1486 4.8683 0.6980 41 1 9.3897 3.1610 1.1398 42 1 8.9320 7.4279 1.9495 43 1 5.0047 2.6317 -3.2328 44 1 5.1053 4.0493 -2.1436 45 1 6.8891 3.5759 -4.2639 46 1 7.3019 4.5514 -2.8154 47 1 7.8125 1.5641 -3.3112 48 1 8.9574 2.7987 -2.6985 49 1 3.6315 3.2304 0.9034 50 1 3.5908 3.2431 -0.8766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000886376942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:40 Heat of formation + Delta-G solvation = -166.697401 kcal Electronic energy + Delta-G solvation = -32425.503367 eV Core-core repulsion = 28224.905383 eV Total energy + Delta-G solvation = -4200.597984 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.03918 -40.01209 -38.54398 -37.10913 -36.36092 -33.73230 -32.81615 -32.37401 -31.33069 -30.23542 -28.35805 -28.06259 -25.54362 -25.01964 -23.59306 -23.05487 -22.14579 -21.24733 -21.09673 -19.60351 -18.36717 -17.87313 -16.99740 -16.56521 -16.35196 -16.17136 -15.80759 -15.47594 -15.14094 -14.97502 -14.44232 -14.11483 -14.06928 -13.80137 -13.63224 -13.54027 -13.06059 -12.89832 -12.65029 -12.37714 -12.37056 -12.12473 -11.88257 -11.71104 -11.55822 -11.23368 -11.15590 -11.08042 -10.99965 -10.92804 -10.85507 -10.70615 -10.53683 -10.51926 -10.40812 -10.35169 -10.07310 -9.90973 -9.41924 -8.75078 -8.49280 -8.15696 -7.99298 -5.94891 -3.97865 2.04654 2.51924 3.36266 3.43615 3.50571 3.59048 3.80526 3.99808 4.41721 4.52762 4.60280 4.62623 4.65960 4.80734 4.85973 4.90535 4.93878 5.07189 5.12135 5.16337 5.26841 5.30846 5.37465 5.42315 5.52043 5.54888 5.68038 5.71972 5.75710 5.79940 5.83952 5.93470 5.95066 6.07467 6.12131 6.17363 6.19078 6.28517 6.40189 6.90745 7.02072 7.18694 7.24547 7.33760 7.58289 7.59899 7.91833 8.07996 8.25169 8.49487 9.07907 9.33017 9.66303 11.11512 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.004100 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.545330 B = 6827.899129 C = 8095.393247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.359 6.359 3 C 0.465 3.535 4 O -0.504 6.504 5 C -0.079 4.079 6 H 0.110 0.890 7 C -0.124 4.124 8 C 0.112 3.888 9 N -0.615 5.615 10 C 0.532 3.468 11 O -0.549 6.549 12 C 0.035 3.965 13 H 0.043 0.957 14 C -0.138 4.138 15 C -0.497 4.497 16 H 0.068 0.932 17 C 0.059 3.941 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.285 1.285 22 H -0.285 1.285 23 C 0.142 3.858 24 H 0.120 0.880 25 C 0.065 3.935 26 H 0.065 0.935 27 C -0.151 4.151 28 C -0.154 4.154 29 C 0.043 3.957 30 O -0.345 6.345 31 C -0.113 4.113 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.100 0.900 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.061 0.939 38 H 0.095 0.905 39 H 0.046 0.954 40 H 0.087 0.913 41 H 0.021 0.979 42 H 0.258 0.742 43 H 0.072 0.928 44 H 0.083 0.917 45 H 0.075 0.925 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.092 0.908 49 H 0.085 0.915 50 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.004 -11.455 -13.381 21.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.308 3.692 4 O -0.391 6.391 5 C -0.098 4.098 6 H 0.127 0.873 7 C -0.163 4.163 8 C -0.011 4.011 9 N -0.350 5.350 10 C 0.325 3.675 11 O -0.425 6.425 12 C 0.014 3.986 13 H 0.060 0.940 14 C -0.196 4.196 15 C -0.536 4.536 16 H 0.086 0.914 17 C -0.141 4.141 18 N -0.534 5.534 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.211 1.211 22 H -0.211 1.211 23 C 0.037 3.963 24 H 0.137 0.863 25 C 0.006 3.994 26 H 0.082 0.918 27 C -0.189 4.189 28 C -0.191 4.191 29 C -0.033 4.033 30 O -0.263 6.263 31 C -0.152 4.152 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.118 0.882 35 H 0.092 0.908 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.113 0.887 39 H 0.065 0.935 40 H 0.105 0.895 41 H 0.040 0.960 42 H 0.068 0.932 43 H 0.091 0.909 44 H 0.102 0.898 45 H 0.093 0.907 46 H 0.102 0.898 47 H 0.071 0.929 48 H 0.110 0.890 49 H 0.104 0.896 50 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -11.832 -11.365 -12.667 20.727 hybrid contribution -0.205 0.503 0.469 0.718 sum -12.037 -10.862 -12.198 20.290 Atomic orbital electron populations 1.23252 0.76581 1.03567 1.02532 1.86516 1.23240 1.33671 1.84140 1.23930 0.92088 0.81219 0.71939 1.90673 1.67154 1.36335 1.44937 1.21176 0.86478 0.99888 1.02238 0.87262 1.21953 0.97199 1.00998 0.96139 1.21390 0.91990 0.84523 1.03184 1.48250 1.46833 1.11191 1.28712 1.21979 0.75490 0.90009 0.80048 1.90513 1.58829 1.64616 1.28550 1.18848 0.95470 0.86379 0.97857 0.93986 1.21837 0.98052 1.02789 0.96897 1.21189 1.40453 0.99118 0.92830 0.91405 1.24908 0.95793 0.96942 0.96500 1.69895 1.46220 1.11503 1.25753 0.86467 0.78146 0.78906 0.84144 1.19657 1.21071 1.21139 1.21519 0.91299 0.98411 0.85090 0.86277 1.23135 0.83148 0.98169 0.94992 0.91756 1.22997 0.98303 1.00430 0.97158 1.23122 0.94916 1.00571 1.00540 1.23542 0.99383 0.96280 0.84135 1.89123 1.18418 1.92003 1.26749 1.21889 0.95050 0.93420 1.04792 0.91904 0.91989 0.88186 0.90766 0.89843 0.92065 0.88687 0.93542 0.89456 0.95986 0.93182 0.90921 0.89838 0.90673 0.89803 0.92863 0.88980 0.89613 0.89719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.33 16 2 O -0.36 -3.78 10.44 -39.25 -0.41 -4.19 16 3 C 0.47 5.64 7.26 36.01 0.26 5.90 16 4 O -0.50 -7.41 15.73 -18.75 -0.29 -7.71 16 5 C -0.08 -0.89 2.39 -91.73 -0.22 -1.11 16 6 H 0.11 1.03 6.38 -51.93 -0.33 0.70 16 7 C -0.12 -1.50 5.30 -26.61 -0.14 -1.64 16 8 C 0.11 1.67 6.06 -3.71 -0.02 1.64 16 9 N -0.62 -11.07 2.46 -165.21 -0.41 -11.48 16 10 C 0.53 12.54 6.79 -10.99 -0.07 12.47 16 11 O -0.55 -14.70 15.21 5.56 0.08 -14.62 16 12 C 0.04 0.90 1.92 -92.93 -0.18 0.72 16 13 H 0.04 1.08 6.03 -51.93 -0.31 0.77 16 14 C -0.14 -3.36 9.06 37.16 0.34 -3.02 16 15 C -0.50 -14.40 8.33 -34.44 -0.29 -14.69 16 16 H 0.07 2.08 7.01 -52.49 -0.37 1.71 16 17 C 0.06 1.66 5.28 -17.82 -0.09 1.56 16 18 N -0.89 -25.25 11.30 55.43 0.63 -24.63 16 19 Si 0.90 22.15 29.54 -169.99 -5.02 17.12 16 20 H -0.27 -6.81 7.11 56.52 0.40 -6.40 16 21 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 22 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 23 C 0.14 2.14 2.06 -67.59 -0.14 2.00 16 24 H 0.12 2.09 5.38 -51.94 -0.28 1.81 16 25 C 0.06 0.83 2.66 -26.16 -0.07 0.76 16 26 H 0.06 0.73 5.82 -51.93 -0.30 0.43 16 27 C -0.15 -1.56 6.02 -25.21 -0.15 -1.71 16 28 C -0.15 -1.61 7.16 -24.72 -0.18 -1.78 16 29 C 0.04 0.51 7.69 38.22 0.29 0.80 16 30 O -0.34 -5.29 8.04 -35.23 -0.28 -5.58 16 31 C -0.11 -1.46 4.02 -26.61 -0.11 -1.57 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.06 0.46 8.13 -51.93 -0.42 0.04 16 34 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.58 16 36 H 0.08 0.83 8.08 -51.93 -0.42 0.41 16 37 H 0.06 0.81 7.68 -51.93 -0.40 0.41 16 38 H 0.09 1.59 7.00 -51.92 -0.36 1.23 16 39 H 0.05 0.99 4.87 -51.93 -0.25 0.73 16 40 H 0.09 2.32 5.90 -51.93 -0.31 2.01 16 41 H 0.02 0.54 8.13 -51.93 -0.42 0.12 16 42 H 0.26 6.96 8.31 -40.82 -0.34 6.62 16 43 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.08 0.88 7.04 -51.93 -0.37 0.51 16 45 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 48 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.09 1.27 8.13 -51.93 -0.42 0.85 16 50 H 0.08 0.97 6.89 -51.93 -0.36 0.62 16 LS Contribution 382.48 15.07 5.76 5.76 Total: -1.00 -34.23 382.48 -7.49 -41.71 By element: Atomic # 1 Polarization: 9.78 SS G_CDS: -7.84 Total: 1.93 kcal Atomic # 6 Polarization: 1.37 SS G_CDS: 0.30 Total: 1.67 kcal Atomic # 7 Polarization: -36.33 SS G_CDS: 0.22 Total: -36.11 kcal Atomic # 8 Polarization: -31.19 SS G_CDS: -0.90 Total: -32.10 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -34.23 -7.49 -41.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886376942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.985 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.713 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds