Wall clock time and date at job start Sat Apr 11 2020 05:45:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34228 * 116.99901 * 2 1 4 4 O 1.20827 * 119.99889 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99977 * 179.97438 * 3 2 1 6 6 H 1.08998 * 109.45832 * 60.02527 * 5 3 2 7 7 C 1.53038 * 109.45760 * 300.06855 * 5 3 2 8 8 C 1.53196 * 109.30850 * 178.61422 * 7 5 3 9 9 N 1.46928 * 108.77671 * 54.63844 * 8 7 5 10 10 C 1.34774 * 120.63478 * 126.66577 * 9 8 7 11 11 O 1.21279 * 119.99704 * 353.56784 * 10 9 8 12 12 C 1.50696 * 120.00367 * 173.56842 * 10 9 8 13 13 H 1.08998 * 109.46941 * 35.76464 * 12 10 9 14 14 C 1.53008 * 109.47120 * 275.76966 * 12 10 9 15 15 C 1.50692 * 109.47370 * 155.76783 * 12 10 9 16 16 H 1.07999 * 120.00025 * 0.02562 * 15 12 10 17 17 C 1.37882 * 120.00282 * 180.02562 * 15 12 10 18 18 N 1.31517 * 119.99430 * 0.02562 * 17 15 12 19 19 Si 1.86793 * 120.00215 * 179.97438 * 17 15 12 20 20 H 1.48501 * 109.47489 * 0.02562 * 19 17 15 21 21 H 1.48503 * 109.47243 * 120.00228 * 19 17 15 22 22 H 1.48504 * 109.47426 * 239.99934 * 19 17 15 23 23 C 1.46932 * 118.73674 * 306.38897 * 9 8 7 24 24 H 1.08989 * 109.58688 * 173.40070 * 23 9 8 25 25 C 1.53005 * 109.58496 * 293.82467 * 23 9 8 26 26 H 1.08999 * 109.87061 * 66.09178 * 25 23 9 27 27 C 1.54097 * 109.88024 * 187.10528 * 25 23 9 28 28 C 1.54804 * 104.18830 * 121.44821 * 27 25 23 29 29 C 1.55003 * 102.09446 * 20.88398 * 28 27 25 30 30 O 1.43750 * 109.87854 * 305.09176 * 25 23 9 31 31 C 1.53045 * 109.45776 * 180.02562 * 5 3 2 32 32 H 1.08995 * 109.47596 * 300.00224 * 1 2 3 33 33 H 1.09003 * 109.46993 * 60.00431 * 1 2 3 34 34 H 1.09001 * 109.46632 * 180.02562 * 1 2 3 35 35 H 1.09002 * 109.49849 * 298.55910 * 7 5 3 36 36 H 1.08999 * 109.50246 * 58.63402 * 7 5 3 37 37 H 1.08997 * 109.58988 * 294.84358 * 8 7 5 38 38 H 1.09009 * 109.58543 * 174.42016 * 8 7 5 39 39 H 1.09001 * 109.47065 * 68.07123 * 14 12 10 40 40 H 1.08998 * 109.46774 * 188.07401 * 14 12 10 41 41 H 1.08999 * 109.46758 * 308.07315 * 14 12 10 42 42 H 0.97008 * 119.99527 * 180.02562 * 18 17 15 43 43 H 1.08995 * 110.49069 * 240.12954 * 27 25 23 44 44 H 1.09006 * 110.48242 * 2.64412 * 27 25 23 45 45 H 1.09004 * 110.90492 * 139.07985 * 28 27 25 46 46 H 1.09002 * 110.91554 * 262.64730 * 28 27 25 47 47 H 1.08997 * 110.61415 * 81.47044 * 29 28 27 48 48 H 1.09000 * 110.61806 * 204.31276 * 29 28 27 49 49 H 1.08989 * 109.49682 * 61.43532 * 31 5 3 50 50 H 1.09000 * 109.49310 * 301.33529 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 1 3.9562 0.7809 -0.8894 7 6 4.1128 0.5798 1.2497 8 6 5.6437 0.6317 1.2295 9 7 6.0676 2.0309 1.0833 10 6 6.9378 2.5794 1.9542 11 8 7.2887 1.9568 2.9340 12 6 7.4747 3.9662 1.7104 13 1 6.6960 4.5839 1.2631 14 6 8.6728 3.8898 0.7617 15 6 7.9084 4.5742 3.0192 16 1 7.8059 4.0125 3.9359 17 6 8.4361 5.8478 3.0465 18 7 8.5604 6.5320 1.9303 19 14 8.9730 6.6018 4.6690 20 1 8.7295 5.6344 5.7691 21 1 10.4205 6.9277 4.6085 22 1 8.1963 7.8425 4.9194 23 6 5.5295 2.8190 -0.0339 24 1 5.8459 3.8572 0.0656 25 6 6.0419 2.2483 -1.3578 26 1 5.6332 1.2499 -1.5138 27 6 5.6294 3.1711 -2.5209 28 6 6.9713 3.5777 -3.1770 29 6 7.9232 2.4545 -2.6924 30 8 7.4782 2.1913 -1.3423 31 6 3.9999 2.7426 0.0011 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3632 -1.0277 0.0005 35 1 3.7433 1.0886 2.1402 36 1 3.7837 -0.4592 1.2614 37 1 6.0181 0.0468 0.3894 38 1 6.0354 0.2269 2.1627 39 1 8.3333 3.5856 -0.2284 40 1 9.1486 4.8683 0.6980 41 1 9.3897 3.1610 1.1398 42 1 8.9320 7.4279 1.9495 43 1 5.0047 2.6317 -3.2328 44 1 5.1053 4.0493 -2.1436 45 1 6.8891 3.5759 -4.2639 46 1 7.3019 4.5514 -2.8154 47 1 7.8125 1.5641 -3.3112 48 1 8.9574 2.7987 -2.6985 49 1 3.6315 3.2304 0.9034 50 1 3.5908 3.2431 -0.8766 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886376942.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:39 Heat of formation + Delta-G solvation = -188.062897 kcal Electronic energy + Delta-G solvation = -32426.429845 eV Core-core repulsion = 28224.905383 eV Total energy + Delta-G solvation = -4201.524461 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.10945 -41.15048 -39.90021 -38.33958 -37.42196 -35.79870 -34.20328 -33.46714 -32.50199 -32.08834 -29.43671 -28.82100 -27.19649 -26.67540 -24.84524 -24.35418 -23.31081 -22.51814 -22.01744 -20.95540 -19.65992 -18.88492 -18.31974 -18.09798 -17.54812 -17.34852 -17.01076 -16.86901 -16.58384 -16.16426 -16.08838 -15.54641 -15.09608 -14.93642 -14.70472 -14.62134 -14.47394 -14.29072 -14.03726 -13.74753 -13.43611 -13.38233 -13.05584 -12.92936 -12.89130 -12.73768 -12.56597 -12.49634 -12.35692 -12.19323 -12.12179 -12.09854 -11.98093 -11.83817 -11.76493 -11.68473 -11.43804 -11.39062 -10.94399 -10.59503 -10.43916 -10.11264 -9.44886 -8.13087 -6.24017 1.11725 1.37334 1.38972 1.52428 1.68932 1.98072 2.16435 2.45436 2.97438 3.14605 3.42032 3.61523 3.68244 3.73300 3.83096 3.99520 4.05245 4.12155 4.23084 4.24044 4.33375 4.35124 4.37037 4.40951 4.54878 4.58570 4.69579 4.73154 4.74412 4.79803 4.85358 4.92182 4.94829 4.98971 5.01611 5.05191 5.15110 5.19447 5.20969 5.31521 5.36374 5.41435 5.52062 5.70411 5.78115 6.03689 6.14707 6.25511 6.61388 6.69208 6.82193 7.40478 7.55015 8.91803 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.011253 B = 0.004100 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2487.545330 B = 6827.899129 C = 8095.393247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.535 6.535 5 C -0.072 4.072 6 H 0.143 0.857 7 C -0.114 4.114 8 C 0.110 3.890 9 N -0.606 5.606 10 C 0.528 3.472 11 O -0.594 6.594 12 C 0.034 3.966 13 H 0.036 0.964 14 C -0.119 4.119 15 C -0.530 4.530 16 H 0.039 0.961 17 C 0.022 3.978 18 N -0.906 5.906 19 Si 0.952 3.048 20 H -0.281 1.281 21 H -0.274 1.274 22 H -0.271 1.271 23 C 0.138 3.862 24 H 0.087 0.913 25 C 0.067 3.933 26 H 0.092 0.908 27 C -0.147 4.147 28 C -0.151 4.151 29 C 0.037 3.963 30 O -0.384 6.384 31 C -0.105 4.105 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.133 0.867 35 H 0.052 0.948 36 H 0.116 0.884 37 H 0.090 0.910 38 H 0.072 0.928 39 H 0.075 0.925 40 H 0.064 0.936 41 H 0.001 0.999 42 H 0.264 0.736 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.104 0.896 46 H 0.060 0.940 47 H 0.080 0.920 48 H 0.084 0.916 49 H 0.058 0.942 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.559 -12.911 -15.855 24.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.316 3.684 4 O -0.424 6.424 5 C -0.091 4.091 6 H 0.161 0.839 7 C -0.152 4.152 8 C -0.012 4.012 9 N -0.338 5.338 10 C 0.320 3.680 11 O -0.475 6.475 12 C 0.013 3.987 13 H 0.053 0.947 14 C -0.177 4.177 15 C -0.568 4.568 16 H 0.058 0.942 17 C -0.178 4.178 18 N -0.546 5.546 19 Si 0.778 3.222 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.196 1.196 23 C 0.034 3.966 24 H 0.105 0.895 25 C 0.008 3.992 26 H 0.109 0.891 27 C -0.185 4.185 28 C -0.188 4.188 29 C -0.039 4.039 30 O -0.303 6.303 31 C -0.144 4.144 32 H 0.074 0.926 33 H 0.083 0.917 34 H 0.151 0.849 35 H 0.071 0.929 36 H 0.134 0.866 37 H 0.108 0.892 38 H 0.090 0.910 39 H 0.094 0.906 40 H 0.083 0.917 41 H 0.021 0.979 42 H 0.074 0.926 43 H 0.125 0.875 44 H 0.096 0.904 45 H 0.123 0.877 46 H 0.079 0.921 47 H 0.098 0.902 48 H 0.102 0.898 49 H 0.077 0.923 50 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -13.425 -12.835 -15.203 24.002 hybrid contribution 0.217 0.932 1.189 1.526 sum -13.209 -11.903 -14.013 22.639 Atomic orbital electron populations 1.23551 0.74923 1.05718 1.02413 1.86499 1.24813 1.32453 1.83546 1.23893 0.92111 0.81269 0.71120 1.90674 1.67806 1.37449 1.46503 1.21122 0.86425 0.98461 1.03049 0.83928 1.21859 0.94706 1.02846 0.95814 1.21617 0.94026 0.82360 1.03246 1.48137 1.44841 1.12740 1.28079 1.21531 0.76607 0.89371 0.80533 1.90475 1.61065 1.65373 1.30555 1.18727 0.95607 0.87823 0.96509 0.94677 1.21637 0.97075 1.00735 0.98230 1.21322 1.42188 0.99975 0.93343 0.94219 1.25559 0.95478 0.97024 0.99708 1.69968 1.45828 1.11761 1.27006 0.85593 0.78334 0.78143 0.80115 1.20625 1.19935 1.19632 1.21679 0.92781 0.96574 0.85591 0.89486 1.23229 0.82247 0.99876 0.93844 0.89081 1.23035 0.98585 1.00126 0.96720 1.23104 0.94535 0.98913 1.02274 1.23740 0.99261 0.97845 0.83010 1.89050 1.19907 1.92208 1.29183 1.21761 0.93079 0.95089 1.04443 0.92557 0.91671 0.84939 0.92905 0.86592 0.89185 0.90990 0.90619 0.91742 0.97926 0.92644 0.87471 0.90379 0.87721 0.92077 0.90214 0.89773 0.92340 0.87718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.34 10.56 113.37 1.20 1.54 16 2 O -0.36 -6.34 10.44 -51.40 -0.54 -6.87 16 3 C 0.47 10.22 7.26 71.24 0.52 10.73 16 4 O -0.53 -14.89 15.73 21.96 0.35 -14.55 16 5 C -0.07 -1.42 2.39 -11.51 -0.03 -1.44 16 6 H 0.14 1.93 6.38 -2.39 -0.02 1.91 16 7 C -0.11 -2.52 5.30 30.67 0.16 -2.36 16 8 C 0.11 3.14 6.06 86.36 0.52 3.67 16 9 N -0.61 -22.11 2.46 -795.01 -1.96 -24.07 16 10 C 0.53 26.13 6.79 87.66 0.59 26.72 16 11 O -0.59 -33.69 15.21 -3.03 -0.05 -33.74 16 12 C 0.03 1.84 1.92 -12.29 -0.02 1.82 16 13 H 0.04 1.92 6.03 -2.39 -0.01 1.91 16 14 C -0.12 -6.05 9.06 71.98 0.65 -5.40 16 15 C -0.53 -32.28 8.33 25.60 0.21 -32.07 16 16 H 0.04 2.59 7.01 -2.91 -0.02 2.57 16 17 C 0.02 1.25 5.28 84.66 0.45 1.69 16 18 N -0.91 -52.30 11.30 21.45 0.24 -52.05 16 19 Si 0.95 46.44 29.54 68.60 2.03 48.47 16 20 H -0.28 -14.03 7.11 99.48 0.71 -13.33 16 21 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 22 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 23 C 0.14 4.10 2.06 44.98 0.09 4.19 16 24 H 0.09 3.18 5.38 -2.39 -0.01 3.16 16 25 C 0.07 1.53 2.66 30.97 0.08 1.62 16 26 H 0.09 1.63 5.82 -2.39 -0.01 1.62 16 27 C -0.15 -2.57 6.02 31.58 0.19 -2.38 16 28 C -0.15 -2.78 7.16 31.90 0.23 -2.55 16 29 C 0.04 0.80 7.69 72.67 0.56 1.36 16 30 O -0.38 -11.26 8.04 -148.98 -1.20 -12.46 16 31 C -0.11 -2.61 4.02 30.67 0.12 -2.49 16 32 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 33 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 34 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 36 H 0.12 1.88 8.08 -2.39 -0.02 1.86 16 37 H 0.09 2.11 7.68 -2.39 -0.02 2.09 16 38 H 0.07 2.44 7.00 -2.38 -0.02 2.43 16 39 H 0.08 3.33 4.87 -2.39 -0.01 3.32 16 40 H 0.06 3.56 5.90 -2.39 -0.01 3.54 16 41 H 0.00 0.08 8.13 -2.39 -0.02 0.06 16 42 H 0.26 14.33 8.31 -92.70 -0.77 13.56 16 43 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.47 7.04 -2.38 -0.02 1.46 16 45 H 0.10 1.32 8.14 -2.38 -0.02 1.30 16 46 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 47 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 48 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 49 H 0.06 1.77 8.13 -2.39 -0.02 1.75 16 50 H 0.10 2.19 6.89 -2.39 -0.02 2.18 16 Total: -1.00 -79.13 382.48 5.35 -73.77 By element: Atomic # 1 Polarization: 15.90 SS G_CDS: 0.95 Total: 16.85 kcal Atomic # 6 Polarization: -0.88 SS G_CDS: 5.53 Total: 4.65 kcal Atomic # 7 Polarization: -74.41 SS G_CDS: -1.72 Total: -76.13 kcal Atomic # 8 Polarization: -66.18 SS G_CDS: -1.43 Total: -67.62 kcal Atomic # 14 Polarization: 46.44 SS G_CDS: 2.03 Total: 48.47 kcal Total: -79.13 5.35 -73.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886376942.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -114.288 kcal (2) G-P(sol) polarization free energy of solvation -79.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -193.414 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -188.063 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds