Wall clock time and date at job start Sat Apr 11 2020 05:45:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45206 * 1 3 3 C 1.34229 * 117.00261 * 2 1 4 4 O 1.20825 * 119.99632 * 359.97438 * 3 2 1 5 5 C 1.50699 * 120.00061 * 180.02562 * 3 2 1 6 6 H 1.08995 * 109.46185 * 59.96768 * 5 3 2 7 7 C 1.53044 * 109.45639 * 299.99596 * 5 3 2 8 8 C 1.53196 * 109.30949 * 178.61657 * 7 5 3 9 9 N 1.46918 * 108.77476 * 54.63648 * 8 7 5 10 10 C 1.34781 * 120.63090 * 126.41491 * 9 8 7 11 11 O 1.21285 * 119.99763 * 175.02720 * 10 9 8 12 12 C 1.50698 * 119.99938 * 355.02423 * 10 9 8 13 13 H 1.09002 * 109.47050 * 50.70074 * 12 10 9 14 14 C 1.52997 * 109.47390 * 290.69872 * 12 10 9 15 15 C 1.50696 * 109.47195 * 170.69632 * 12 10 9 16 16 H 1.08002 * 120.00293 * 359.97438 * 15 12 10 17 17 C 1.37877 * 120.00359 * 180.02562 * 15 12 10 18 18 N 1.31519 * 119.99739 * 359.97438 * 17 15 12 19 19 Si 1.86792 * 120.00338 * 180.02562 * 17 15 12 20 20 H 1.48502 * 109.47357 * 59.99536 * 19 17 15 21 21 H 1.48504 * 109.47309 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47352 * 299.99586 * 19 17 15 23 23 C 1.46928 * 118.74246 * 306.38665 * 9 8 7 24 24 H 1.08996 * 109.58937 * 293.82870 * 23 9 8 25 25 C 1.52999 * 109.59108 * 173.54032 * 23 9 8 26 26 H 1.09003 * 110.33366 * 310.35025 * 25 23 9 27 27 C 1.54475 * 110.37415 * 188.09600 * 25 23 9 28 28 C 1.54505 * 104.06445 * 217.18825 * 27 25 23 29 29 C 1.54479 * 104.06170 * 0.02562 * 28 27 25 30 30 O 1.44421 * 110.37092 * 72.59538 * 25 23 9 31 31 C 1.53039 * 109.45876 * 179.97438 * 5 3 2 32 32 H 1.08997 * 109.47098 * 59.99698 * 1 2 3 33 33 H 1.08998 * 109.46994 * 180.02562 * 1 2 3 34 34 H 1.08999 * 109.46780 * 300.00426 * 1 2 3 35 35 H 1.09005 * 109.49878 * 298.56839 * 7 5 3 36 36 H 1.08991 * 109.49643 * 58.63401 * 7 5 3 37 37 H 1.08997 * 109.58004 * 174.42434 * 8 7 5 38 38 H 1.09003 * 109.58580 * 294.84630 * 8 7 5 39 39 H 1.08994 * 109.47318 * 173.38517 * 14 12 10 40 40 H 1.09006 * 109.47089 * 293.38189 * 14 12 10 41 41 H 1.09001 * 109.47267 * 53.37450 * 14 12 10 42 42 H 0.96997 * 119.99933 * 180.02562 * 18 17 15 43 43 H 1.08997 * 110.51322 * 335.83811 * 27 25 23 44 44 H 1.09006 * 110.51222 * 98.54664 * 27 25 23 45 45 H 1.09009 * 110.51025 * 118.64324 * 28 27 25 46 46 H 1.08991 * 110.51561 * 241.35603 * 28 27 25 47 47 H 1.09006 * 110.37300 * 142.80857 * 29 28 27 48 48 H 1.09006 * 110.37228 * 265.14328 * 29 28 27 49 49 H 1.08999 * 109.50015 * 301.33193 * 31 5 3 50 50 H 1.08998 * 109.49811 * 61.43287 * 31 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 1 3.9556 0.7803 -0.8905 7 6 4.1137 0.5807 1.2488 8 6 5.6447 0.6326 1.2275 9 7 6.0684 2.0315 1.0798 10 6 6.9354 2.5822 1.9526 11 8 7.3472 3.7082 1.7695 12 6 7.3929 1.7989 3.1560 13 1 7.7425 0.8165 2.8385 14 6 6.2257 1.6342 4.1313 15 6 8.5168 2.5359 3.8375 16 1 8.8654 3.4772 3.4389 17 6 9.1010 2.0081 4.9694 18 7 8.6770 0.8616 5.4545 19 14 10.4937 2.9220 5.8145 20 1 10.0168 4.2601 6.2476 21 1 10.9455 2.1495 6.9996 22 1 11.6266 3.0829 4.8680 23 6 5.5297 2.8187 -0.0377 24 1 5.8941 2.4114 -0.9807 25 6 5.9768 4.2756 0.0986 26 1 5.7756 4.6409 1.1056 27 6 5.2598 5.1582 -0.9470 28 6 6.3355 6.1810 -1.3760 29 6 7.5754 5.7949 -0.5394 30 8 7.3820 4.4012 -0.2103 31 6 4.0001 2.7424 -0.0011 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 -1.0276 0.0005 34 1 -0.3633 0.5139 0.8900 35 1 3.7448 1.0902 2.1391 36 1 3.7846 -0.4582 1.2615 37 1 6.0369 0.2284 2.1607 38 1 6.0184 0.0469 0.3876 39 1 6.5217 0.9704 4.9435 40 1 5.9527 2.6077 4.5389 41 1 5.3710 1.2076 3.6064 42 1 9.0877 0.4904 6.2510 43 1 4.9416 4.5583 -1.7995 44 1 4.4071 5.6669 -0.4971 45 1 6.5492 6.0866 -2.4408 46 1 6.0147 7.1951 -1.1383 47 1 8.4847 5.9245 -1.1265 48 1 7.6212 6.3942 0.3700 49 1 3.5905 3.2426 -0.8787 50 1 3.6323 3.2308 0.9013 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000886376943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:41 Heat of formation + Delta-G solvation = -172.226106 kcal Electronic energy + Delta-G solvation = -32232.403914 eV Core-core repulsion = 28031.566187 eV Total energy + Delta-G solvation = -4200.837727 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.04130 -41.21727 -39.58083 -38.30471 -37.38931 -35.82739 -34.10078 -33.63821 -32.73789 -31.75549 -29.22318 -28.79878 -27.19162 -26.65358 -25.04308 -24.10573 -23.12476 -22.62947 -21.61781 -21.22404 -19.85570 -18.59172 -18.25894 -17.85685 -17.65983 -17.22159 -17.13746 -16.79799 -16.56978 -16.10882 -15.98970 -15.42005 -15.34387 -14.78409 -14.72595 -14.57343 -14.50009 -14.10631 -14.01090 -13.80900 -13.39532 -13.17410 -13.10284 -12.96017 -12.84274 -12.66412 -12.59819 -12.48147 -12.42232 -12.28370 -12.15050 -11.94975 -11.91048 -11.81363 -11.71590 -11.59812 -11.40647 -11.37691 -10.98765 -10.52072 -10.37064 -9.71464 -9.33914 -8.12297 -6.20155 1.14706 1.39909 1.41222 1.49732 1.70856 2.13436 2.22382 2.47691 3.10086 3.17968 3.44457 3.65819 3.69730 3.83225 3.89684 3.98520 4.13304 4.16036 4.25029 4.31307 4.34542 4.36603 4.41627 4.48495 4.50206 4.63798 4.71679 4.75018 4.76848 4.77740 4.79127 4.87495 4.93308 4.94155 4.96078 4.99841 5.07153 5.11766 5.16889 5.25306 5.29871 5.39760 5.52492 5.77667 5.81152 6.00485 6.20220 6.26250 6.70725 6.71752 6.88576 7.45669 7.72359 8.93873 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.010339 B = 0.004263 C = 0.003155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2707.457952 B = 6566.451312 C = 8872.146310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.472 3.528 4 O -0.536 6.536 5 C -0.071 4.071 6 H 0.142 0.858 7 C -0.118 4.118 8 C 0.104 3.896 9 N -0.621 5.621 10 C 0.508 3.492 11 O -0.536 6.536 12 C 0.031 3.969 13 H 0.037 0.963 14 C -0.114 4.114 15 C -0.524 4.524 16 H 0.044 0.956 17 C 0.022 3.978 18 N -0.910 5.910 19 Si 0.950 3.050 20 H -0.280 1.280 21 H -0.274 1.274 22 H -0.278 1.278 23 C 0.155 3.845 24 H 0.089 0.911 25 C 0.095 3.905 26 H 0.039 0.961 27 C -0.151 4.151 28 C -0.143 4.143 29 C 0.036 3.964 30 O -0.369 6.369 31 C -0.101 4.101 32 H 0.064 0.936 33 H 0.131 0.869 34 H 0.057 0.943 35 H 0.058 0.942 36 H 0.116 0.884 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.067 0.933 40 H 0.012 0.988 41 H 0.052 0.948 42 H 0.263 0.737 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.090 0.910 46 H 0.084 0.916 47 H 0.091 0.909 48 H 0.031 0.969 49 H 0.100 0.900 50 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -2.270 -15.646 22.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.317 3.683 4 O -0.426 6.426 5 C -0.090 4.090 6 H 0.160 0.840 7 C -0.157 4.157 8 C -0.018 4.018 9 N -0.357 5.357 10 C 0.298 3.702 11 O -0.412 6.412 12 C 0.010 3.990 13 H 0.054 0.946 14 C -0.172 4.172 15 C -0.562 4.562 16 H 0.063 0.937 17 C -0.177 4.177 18 N -0.550 5.550 19 Si 0.776 3.224 20 H -0.206 1.206 21 H -0.199 1.199 22 H -0.203 1.203 23 C 0.052 3.948 24 H 0.107 0.893 25 C 0.037 3.963 26 H 0.057 0.943 27 C -0.189 4.189 28 C -0.180 4.180 29 C -0.041 4.041 30 O -0.288 6.288 31 C -0.139 4.139 32 H 0.082 0.918 33 H 0.150 0.850 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.134 0.866 37 H 0.107 0.893 38 H 0.110 0.890 39 H 0.086 0.914 40 H 0.031 0.969 41 H 0.071 0.929 42 H 0.073 0.927 43 H 0.113 0.887 44 H 0.100 0.900 45 H 0.109 0.891 46 H 0.103 0.897 47 H 0.109 0.891 48 H 0.050 0.950 49 H 0.119 0.881 50 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -15.396 -1.687 -15.573 21.964 hybrid contribution 0.669 0.902 1.053 1.540 sum -14.727 -0.784 -14.520 20.696 Atomic orbital electron populations 1.23541 0.74966 1.05678 1.02381 1.86505 1.24779 1.32534 1.83518 1.23910 0.92177 0.81225 0.71025 1.90660 1.67854 1.37426 1.46649 1.21058 0.86330 0.98304 1.03318 0.83996 1.21924 0.94923 1.02989 0.95817 1.21951 0.94263 0.81285 1.04295 1.48274 1.46004 1.13284 1.28118 1.21501 0.77268 0.87451 0.83961 1.90632 1.55531 1.20719 1.74341 1.18722 0.94943 0.95242 0.90122 0.94560 1.21578 0.95702 0.99594 1.00293 1.21256 1.17328 1.06794 1.10832 0.93740 1.25522 0.99061 0.95806 0.97358 1.69945 1.42762 1.18895 1.23366 0.85743 0.79899 0.78678 0.78058 1.20562 1.19885 1.20328 1.21224 0.92806 0.90436 0.90357 0.89290 1.22755 0.81957 0.94531 0.97077 0.94260 1.23120 0.98620 0.97769 0.99374 1.22893 0.94196 0.99860 1.01070 1.23384 0.99593 0.83760 0.97391 1.89312 1.25633 1.25308 1.88499 1.21740 0.93003 0.95049 1.04119 0.91768 0.85049 0.92449 0.92284 0.86598 0.89297 0.88958 0.91376 0.96880 0.92912 0.92740 0.88736 0.90028 0.89114 0.89716 0.89105 0.95027 0.88141 0.92496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.35 10.56 113.37 1.20 1.55 16 2 O -0.36 -6.34 10.44 -51.41 -0.54 -6.88 16 3 C 0.47 9.99 7.25 71.24 0.52 10.51 16 4 O -0.54 -14.45 15.73 21.97 0.35 -14.11 16 5 C -0.07 -1.35 2.59 -11.51 -0.03 -1.38 16 6 H 0.14 1.88 8.14 -2.39 -0.02 1.86 16 7 C -0.12 -2.45 5.15 30.67 0.16 -2.29 16 8 C 0.10 2.76 5.48 86.37 0.47 3.23 16 9 N -0.62 -21.47 2.97 -795.02 -2.36 -23.83 16 10 C 0.51 23.62 6.74 87.66 0.59 24.21 16 11 O -0.54 -28.12 9.75 21.13 0.21 -27.91 16 12 C 0.03 1.57 1.78 -12.29 -0.02 1.55 16 13 H 0.04 1.90 7.21 -2.39 -0.02 1.88 16 14 C -0.11 -5.31 8.42 71.98 0.61 -4.71 16 15 C -0.52 -30.89 8.36 25.60 0.21 -30.67 16 16 H 0.04 2.82 6.79 -2.91 -0.02 2.80 16 17 C 0.02 1.23 5.30 84.65 0.45 1.67 16 18 N -0.91 -51.55 11.40 21.45 0.24 -51.31 16 19 Si 0.95 45.99 29.54 68.60 2.03 48.01 16 20 H -0.28 -13.57 7.11 99.48 0.71 -12.87 16 21 H -0.27 -12.52 7.11 99.48 0.71 -11.81 16 22 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 23 C 0.15 4.47 2.70 44.98 0.12 4.59 16 24 H 0.09 2.30 8.14 -2.39 -0.02 2.28 16 25 C 0.09 3.19 1.91 31.10 0.06 3.25 16 26 H 0.04 1.65 6.60 -2.39 -0.02 1.63 16 27 C -0.15 -3.59 5.56 31.61 0.18 -3.41 16 28 C -0.14 -3.24 7.09 31.61 0.22 -3.01 16 29 C 0.04 1.14 7.63 72.48 0.55 1.69 16 30 O -0.37 -14.68 8.61 -124.81 -1.07 -15.75 16 31 C -0.10 -2.34 3.47 30.67 0.11 -2.23 16 32 H 0.06 0.79 8.13 -2.39 -0.02 0.77 16 33 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 34 H 0.06 0.80 8.13 -2.39 -0.02 0.78 16 35 H 0.06 1.45 7.50 -2.38 -0.02 1.43 16 36 H 0.12 1.79 8.08 -2.39 -0.02 1.77 16 37 H 0.09 2.74 4.66 -2.39 -0.01 2.72 16 38 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.07 3.45 6.28 -2.39 -0.02 3.43 16 40 H 0.01 0.61 8.14 -2.38 -0.02 0.59 16 41 H 0.05 2.01 5.38 -2.39 -0.01 2.00 16 42 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 43 H 0.09 1.80 7.20 -2.39 -0.02 1.79 16 44 H 0.08 1.80 8.14 -2.38 -0.02 1.78 16 45 H 0.09 1.68 8.14 -2.38 -0.02 1.66 16 46 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 47 H 0.09 2.57 8.14 -2.38 -0.02 2.55 16 48 H 0.03 1.11 8.14 -2.38 -0.02 1.09 16 49 H 0.10 1.99 6.83 -2.39 -0.02 1.98 16 50 H 0.06 1.60 8.13 -2.39 -0.02 1.58 16 Total: -1.00 -75.57 380.41 5.18 -70.39 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.94 Total: 16.85 kcal Atomic # 6 Polarization: -0.85 SS G_CDS: 5.39 Total: 4.54 kcal Atomic # 7 Polarization: -73.02 SS G_CDS: -2.12 Total: -75.14 kcal Atomic # 8 Polarization: -63.60 SS G_CDS: -1.06 Total: -64.66 kcal Atomic # 14 Polarization: 45.99 SS G_CDS: 2.03 Total: 48.01 kcal Total: -75.57 5.18 -70.39 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000886376943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.833 kcal (2) G-P(sol) polarization free energy of solvation -75.570 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.393 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds