Wall clock time and date at job start Sat Apr 11 2020 05:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47069 * 2 1 4 4 C 1.53001 * 109.47399 * 239.99402 * 2 1 3 5 5 N 1.46498 * 109.46878 * 65.00205 * 4 2 1 6 6 C 1.34777 * 119.99909 * 179.97438 * 5 4 2 7 7 O 1.21590 * 120.00216 * 0.02562 * 6 5 4 8 8 N 1.34775 * 119.99976 * 179.97438 * 6 5 4 9 9 C 1.40138 * 120.00256 * 185.45282 * 8 6 5 10 10 C 1.38694 * 120.07196 * 24.42823 * 9 8 6 11 11 C 1.38201 * 120.01754 * 179.69940 * 10 9 8 12 12 C 1.38538 * 120.17705 * 0.60393 * 11 10 9 13 13 F 1.35102 * 119.92726 * 179.69824 * 12 11 10 14 14 C 1.38343 * 120.15224 * 359.67416 * 12 11 10 15 15 C 1.38741 * 119.97492 * 0.02562 * 14 12 11 16 16 O 1.35777 * 120.08826 * 180.02562 * 15 14 12 17 17 C 1.34807 * 117.00146 * 5.73607 * 16 15 14 18 18 H 1.08003 * 119.99850 * 5.39043 * 17 16 15 19 19 C 1.38631 * 120.00281 * 185.39103 * 17 16 15 20 20 N 1.31573 * 119.99872 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00181 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47129 * 0.02562 * 21 19 17 23 23 H 1.48501 * 109.47013 * 120.00265 * 21 19 17 24 24 H 1.48496 * 109.47431 * 240.00244 * 21 19 17 25 25 C 1.53000 * 109.46942 * 119.99402 * 2 1 3 26 26 N 1.46908 * 109.46984 * 185.29394 * 25 2 1 27 27 C 1.46901 * 110.99878 * 71.58774 * 26 25 2 28 28 C 1.46903 * 110.99705 * 195.53921 * 26 25 2 29 29 H 1.08995 * 109.47358 * 295.00366 * 1 2 3 30 30 H 1.08995 * 109.46845 * 55.00157 * 1 2 3 31 31 H 1.08999 * 109.46999 * 174.99591 * 1 2 3 32 32 H 1.09000 * 109.47318 * 184.99853 * 4 2 1 33 33 H 1.09000 * 109.47346 * 305.00090 * 4 2 1 34 34 H 0.97005 * 120.00074 * 359.97438 * 5 4 2 35 35 H 0.96999 * 120.00149 * 5.45271 * 8 6 5 36 36 H 1.08001 * 119.98891 * 359.97438 * 10 9 8 37 37 H 1.08004 * 119.91187 * 180.29758 * 11 10 9 38 38 H 1.08001 * 120.01781 * 180.02562 * 14 12 11 39 39 H 0.97006 * 119.99975 * 179.97438 * 20 19 17 40 40 H 1.09001 * 109.47392 * 305.29564 * 25 2 1 41 41 H 1.08998 * 109.47048 * 65.30030 * 25 2 1 42 42 H 1.09005 * 109.47235 * 64.88822 * 27 26 25 43 43 H 1.08995 * 109.47402 * 184.89116 * 27 26 25 44 44 H 1.09001 * 109.46726 * 304.89063 * 27 26 25 45 45 H 1.08995 * 109.47059 * 60.00180 * 28 26 25 46 46 H 1.08998 * 109.46812 * 180.02562 * 28 26 25 47 47 H 1.09004 * 109.46991 * 299.99600 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7214 -1.2492 5 7 1.6525 0.0352 -2.4423 6 6 1.9966 -0.4134 -3.6658 7 8 2.6282 -1.4461 -3.7794 8 7 1.6397 0.2824 -4.7636 9 6 1.8964 -0.2399 -6.0384 10 6 2.0304 -1.6091 -6.2144 11 6 2.2775 -2.1234 -7.4732 12 6 2.4044 -1.2737 -8.5600 13 9 2.6519 -1.7815 -9.7873 14 6 2.2778 0.0936 -8.3917 15 6 2.0236 0.6163 -7.1319 16 8 1.8983 1.9578 -6.9641 17 6 1.9130 2.7179 -8.0774 18 1 1.9332 2.2499 -9.0505 19 6 1.9023 4.1002 -7.9732 20 7 1.8783 4.6704 -6.7876 21 14 1.9220 5.1534 -9.5158 22 1 1.9476 4.2762 -10.7137 23 1 0.7044 6.0028 -9.5508 24 1 3.1290 6.0184 -9.5094 25 6 2.0399 -0.7211 1.2493 26 7 3.5034 -0.6114 1.3149 27 6 3.9141 0.7580 1.6525 28 6 4.0616 -1.5788 2.2693 29 1 -0.3634 0.4343 0.9313 30 1 -0.3633 0.5894 -0.8418 31 1 -0.3633 -1.0237 -0.0896 32 1 3.1264 -0.7996 -1.2055 33 1 1.6055 -1.7199 -1.2950 34 1 1.1483 0.8589 -2.3518 35 1 1.2050 1.1446 -4.6712 36 1 1.9373 -2.2738 -5.3684 37 1 2.3768 -3.1902 -7.6091 38 1 2.3767 0.7540 -9.2405 39 1 1.8712 5.6377 -6.7147 40 1 1.6012 -0.2649 2.1368 41 1 1.7562 -1.7725 1.2032 42 1 3.5727 1.0022 2.6585 43 1 5.0006 0.8326 1.6095 44 1 3.4735 1.4554 0.9400 45 1 3.8005 -2.5897 1.9565 46 1 5.1463 -1.4758 2.2985 47 1 3.6520 -1.3881 3.2613 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887888359.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:00 Heat of formation + Delta-G solvation = -69.479398 kcal Electronic energy + Delta-G solvation = -29261.100952 eV Core-core repulsion = 24973.551103 eV Total energy + Delta-G solvation = -4287.549849 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -48.17601 -40.23720 -38.92733 -38.25448 -36.41387 -35.41493 -33.97363 -32.61211 -32.36532 -29.34330 -28.33324 -27.87268 -27.24872 -25.89820 -25.42088 -22.68779 -22.27097 -21.55614 -20.54721 -20.14769 -18.31127 -18.12211 -17.55020 -16.80439 -16.13613 -15.71470 -15.41168 -15.25310 -15.19983 -15.00273 -14.89321 -14.57059 -14.27777 -14.12906 -13.84053 -13.52079 -13.43865 -13.25672 -13.07743 -12.88164 -12.64772 -12.39629 -12.25358 -12.11974 -12.00740 -11.96219 -11.63926 -11.40099 -11.24206 -11.21203 -10.94679 -10.77839 -10.67238 -10.49024 -9.81324 -9.74060 -9.40973 -8.93389 -8.86254 -8.60088 -7.79931 -6.96976 -6.57219 -4.14545 1.93212 2.18638 2.99584 3.07432 3.10116 3.15233 3.54294 3.64488 3.87597 4.43916 4.45882 4.55109 4.70932 4.83747 4.90780 4.95306 5.01340 5.05140 5.15007 5.17946 5.23990 5.28038 5.37812 5.46271 5.60232 5.61336 5.62354 5.67239 5.70735 5.80868 5.87978 6.07890 6.09051 6.12698 6.28604 6.59883 6.71832 6.72621 6.74480 6.75126 6.97536 7.02193 7.13292 7.21718 7.38375 7.73645 7.87477 8.34851 8.88776 8.93306 9.51576 10.60188 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.010648 B = 0.002764 C = 0.002328 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2628.936419 B =10129.173214 C =12026.381919 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.101 4.101 3 H 0.079 0.921 4 C 0.152 3.848 5 N -0.746 5.746 6 C 0.703 3.297 7 O -0.584 6.584 8 N -0.665 5.665 9 C 0.087 3.913 10 C -0.064 4.064 11 C -0.223 4.223 12 C 0.121 3.879 13 F -0.153 7.153 14 C -0.255 4.255 15 C 0.152 3.848 16 O -0.172 6.172 17 C -0.390 4.390 18 H 0.094 0.906 19 C 0.042 3.958 20 N -0.861 5.861 21 Si 0.941 3.059 22 H -0.266 1.266 23 H -0.275 1.275 24 H -0.275 1.275 25 C 0.062 3.938 26 N -0.546 5.546 27 C 0.021 3.979 28 C 0.025 3.975 29 H 0.055 0.945 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.079 0.921 33 H 0.060 0.940 34 H 0.395 0.605 35 H 0.412 0.588 36 H 0.150 0.850 37 H 0.122 0.878 38 H 0.142 0.858 39 H 0.270 0.730 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.024 0.976 43 H 0.068 0.932 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.068 0.932 47 H 0.023 0.977 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.919 -7.091 15.910 17.524 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.120 4.120 3 H 0.097 0.903 4 C 0.028 3.972 5 N -0.402 5.402 6 C 0.404 3.596 7 O -0.462 6.462 8 N -0.311 5.311 9 C -0.009 4.009 10 C -0.085 4.085 11 C -0.243 4.243 12 C 0.101 3.899 13 F -0.132 7.132 14 C -0.276 4.276 15 C 0.096 3.904 16 O -0.075 6.075 17 C -0.466 4.466 18 H 0.112 0.888 19 C -0.163 4.163 20 N -0.496 5.496 21 Si 0.766 3.234 22 H -0.190 1.190 23 H -0.201 1.201 24 H -0.201 1.201 25 C -0.066 4.066 26 N -0.270 5.270 27 C -0.127 4.127 28 C -0.123 4.123 29 H 0.074 0.926 30 H 0.080 0.920 31 H 0.077 0.923 32 H 0.098 0.902 33 H 0.079 0.921 34 H 0.229 0.771 35 H 0.248 0.752 36 H 0.168 0.832 37 H 0.140 0.860 38 H 0.160 0.840 39 H 0.080 0.920 40 H 0.058 0.942 41 H 0.096 0.904 42 H 0.042 0.958 43 H 0.087 0.913 44 H 0.090 0.910 45 H 0.088 0.912 46 H 0.087 0.913 47 H 0.041 0.959 Dipole moment (debyes) X Y Z Total from point charges -1.188 -7.767 15.670 17.530 hybrid contribution -0.581 1.592 -0.158 1.703 sum -1.769 -6.174 15.512 16.789 Atomic orbital electron populations 1.21845 0.94445 1.02441 1.01937 1.21410 0.95772 1.00497 0.94369 0.90286 1.21149 1.01079 0.93949 0.81067 1.45132 1.61433 1.28956 1.04687 1.15860 0.79748 0.83710 0.80303 1.90841 1.44809 1.25149 1.85430 1.42267 1.62339 1.23580 1.02913 1.16720 1.10791 0.91243 0.82110 1.20841 0.97918 0.92716 0.97032 1.20503 1.13021 0.99063 0.91745 1.17455 1.01319 0.91685 0.79434 1.91403 1.92023 1.87870 1.41871 1.20824 1.14341 0.93625 0.98773 1.18716 0.94846 0.85423 0.91400 1.83923 1.78406 1.10720 1.34496 1.21376 1.52840 0.87654 0.84738 0.88850 1.25265 0.96301 0.95939 0.98750 1.70023 1.45875 1.11082 1.22591 0.85630 0.78293 0.79557 0.79923 1.18972 1.20093 1.20088 1.22130 0.87127 1.01095 0.96256 1.61937 1.09900 1.05433 1.49711 1.22454 1.01574 0.89701 0.98970 1.22382 1.00370 0.96414 0.93142 0.92610 0.92048 0.92251 0.90225 0.92119 0.77110 0.75216 0.83231 0.86019 0.84021 0.91981 0.94235 0.90421 0.95789 0.91280 0.90979 0.91208 0.91303 0.95860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.11 9.01 37.16 0.33 -0.78 16 2 C -0.10 -0.86 2.44 -90.62 -0.22 -1.08 16 3 H 0.08 0.69 6.48 -51.93 -0.34 0.35 16 4 C 0.15 1.77 5.01 -4.04 -0.02 1.75 16 5 N -0.75 -9.94 5.33 -65.23 -0.35 -10.29 16 6 C 0.70 12.48 8.38 -86.92 -0.73 11.75 16 7 O -0.58 -12.00 13.48 5.29 0.07 -11.92 16 8 N -0.66 -12.56 5.30 -14.07 -0.07 -12.63 16 9 C 0.09 1.85 6.46 -83.44 -0.54 1.31 16 10 C -0.06 -1.29 8.72 -39.43 -0.34 -1.63 16 11 C -0.22 -4.29 10.02 -39.48 -0.40 -4.68 16 12 C 0.12 2.49 7.29 -39.43 -0.29 2.20 16 13 F -0.15 -3.00 17.26 2.25 0.04 -2.97 16 14 C -0.25 -5.68 9.11 -39.36 -0.36 -6.04 16 15 C 0.15 3.56 6.66 -38.94 -0.26 3.30 16 16 O -0.17 -4.52 9.17 0.03 0.00 -4.52 16 17 C -0.39 -10.35 9.44 30.88 0.29 -10.06 16 18 H 0.09 2.34 5.30 -52.48 -0.28 2.07 16 19 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 20 N -0.86 -23.59 13.67 55.48 0.76 -22.83 16 21 Si 0.94 19.84 29.55 -169.99 -5.02 14.82 16 22 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 23 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 24 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 25 C 0.06 0.49 4.36 -3.82 -0.02 0.47 16 26 N -0.55 -4.83 4.36 -251.25 -1.10 -5.93 16 27 C 0.02 0.17 9.44 60.07 0.57 0.74 16 28 C 0.03 0.18 9.54 60.07 0.57 0.76 16 29 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 30 H 0.06 0.48 7.31 -51.93 -0.38 0.10 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 32 H 0.08 1.10 7.63 -51.93 -0.40 0.71 16 33 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.40 4.43 7.70 -40.82 -0.31 4.12 16 35 H 0.41 7.45 8.36 -40.82 -0.34 7.11 16 36 H 0.15 2.95 5.75 -52.49 -0.30 2.64 16 37 H 0.12 2.03 8.06 -52.48 -0.42 1.60 16 38 H 0.14 3.16 5.71 -52.49 -0.30 2.86 16 39 H 0.27 6.83 8.31 -40.82 -0.34 6.49 16 40 H 0.04 0.28 8.06 -51.93 -0.42 -0.14 16 41 H 0.08 0.58 7.96 -51.93 -0.41 0.17 16 42 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 44 H 0.07 0.60 6.43 -51.93 -0.33 0.26 16 45 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 46 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 47 H 0.02 0.15 8.14 -51.93 -0.42 -0.27 16 LS Contribution 388.95 15.07 5.86 5.86 Total: -1.00 -30.64 388.95 -8.06 -38.70 By element: Atomic # 1 Polarization: 19.45 SS G_CDS: -6.75 Total: 12.70 kcal Atomic # 6 Polarization: 0.52 SS G_CDS: -1.50 Total: -0.98 kcal Atomic # 7 Polarization: -50.92 SS G_CDS: -0.76 Total: -51.68 kcal Atomic # 8 Polarization: -16.52 SS G_CDS: 0.07 Total: -16.45 kcal Atomic # 9 Polarization: -3.00 SS G_CDS: 0.04 Total: -2.97 kcal Atomic # 14 Polarization: 19.84 SS G_CDS: -5.02 Total: 14.82 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -30.64 -8.06 -38.70 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887888359.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.780 kcal (2) G-P(sol) polarization free energy of solvation -30.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.419 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.699 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.479 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds