Wall clock time and date at job start Sat Apr 11 2020 05:44:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47373 * 300.00269 * 3 2 1 6 6 H 1.48499 * 109.46873 * 60.00063 * 3 2 1 7 7 C 1.40118 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99602 * 179.97438 * 7 2 1 9 9 C 1.40817 * 120.00039 * 359.97438 * 7 2 1 10 10 N 1.33908 * 120.27669 * 359.97438 * 9 7 2 11 11 C 1.31723 * 119.89249 * 179.97438 * 10 9 7 12 12 C 1.38965 * 120.47614 * 0.02562 * 11 10 9 13 13 N 1.32238 * 120.56812 * 0.02562 * 12 11 10 14 14 C 1.32615 * 120.08776 * 359.97438 * 13 12 11 15 15 N 1.37948 * 120.23427 * 179.97438 * 14 13 12 16 16 C 1.46494 * 119.99785 * 0.02562 * 15 14 13 17 17 C 1.50704 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.38665 * 120.42461 * 260.00139 * 17 16 15 19 19 C 1.38629 * 118.42502 * 180.02562 * 18 17 16 20 20 C 1.38226 * 119.16014 * 359.97438 * 19 18 17 21 21 N 1.31853 * 120.76289 * 0.02562 * 20 19 18 22 22 C 1.31892 * 121.72480 * 359.70014 * 21 20 19 23 23 C 1.50698 * 119.61603 * 180.31314 * 22 21 20 24 24 C 1.53119 * 109.52428 * 60.14286 * 23 22 21 25 25 C 1.53043 * 109.27897 * 182.50336 * 24 23 22 26 26 N 1.46850 * 109.57444 * 59.08127 * 25 24 23 27 27 C 1.46848 * 111.19878 * 298.29133 * 26 25 24 28 28 C 1.53042 * 109.52059 * 61.74378 * 27 26 25 29 29 H 0.97003 * 120.00336 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.75927 * 180.28337 * 11 10 9 31 31 H 1.07998 * 119.71012 * 179.97438 * 12 11 10 32 32 H 0.96996 * 119.99670 * 179.97438 * 15 14 13 33 33 H 1.08999 * 109.47491 * 299.99517 * 16 15 14 34 34 H 1.09004 * 109.47410 * 60.00015 * 16 15 14 35 35 H 1.08010 * 120.78660 * 359.97438 * 18 17 16 36 36 H 1.07994 * 120.41816 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.61837 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.52225 * 180.26639 * 23 22 21 39 39 H 1.09000 * 109.50775 * 302.37941 * 24 23 22 40 40 H 1.09002 * 109.50408 * 62.49769 * 24 23 22 41 41 H 1.09004 * 109.40994 * 299.06768 * 25 24 23 42 42 H 1.09001 * 109.46538 * 179.13071 * 25 24 23 43 43 H 1.00898 * 110.99601 * 62.39055 * 26 25 24 44 44 H 1.08997 * 109.46523 * 301.72486 * 27 26 25 45 45 H 1.08998 * 109.46265 * 181.75428 * 27 26 25 46 46 H 1.08999 * 109.50105 * 180.87957 * 28 27 26 47 47 H 1.08995 * 109.53523 * 60.77899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8825 2.3966 -1.2124 6 1 1.8825 2.3964 1.2125 7 6 2.0079 -1.2135 -0.0005 8 1 3.0879 -1.2134 -0.0010 9 6 1.3038 -2.4330 -0.0005 10 7 -0.0352 -2.4395 0.0005 11 6 -0.6862 -3.5846 0.0000 12 6 0.0067 -4.7892 -0.0011 13 7 1.3290 -4.8044 -0.0011 14 6 2.0070 -3.6647 -0.0006 15 7 3.3864 -3.6770 -0.0001 16 6 4.1075 -4.9522 -0.0007 17 6 5.5916 -4.6901 -0.0006 18 6 6.3192 -4.7719 -1.1781 19 6 7.6821 -4.5233 -1.1303 20 6 8.2664 -4.2038 0.0810 21 7 7.5431 -4.1350 1.1813 22 6 6.2435 -4.3600 1.1722 23 6 5.4617 -4.2616 2.4567 24 6 5.5898 -2.8462 3.0266 25 6 4.8460 -2.7699 4.3620 26 7 5.4138 -3.7485 5.2981 27 6 5.2585 -5.1186 4.7931 28 6 6.0161 -5.2654 3.4714 29 1 -0.4851 0.8400 -0.0004 30 1 -1.7661 -3.5873 -0.0038 31 1 -0.5395 -5.7209 -0.0011 32 1 3.8789 -2.8414 -0.0001 33 1 3.8388 -5.5220 0.8888 34 1 3.8394 -5.5209 -0.8912 35 1 5.8356 -5.0242 -2.1104 36 1 8.2797 -4.5777 -2.0282 37 1 9.3277 -4.0090 0.1268 38 1 4.4122 -4.4822 2.2621 39 1 6.6425 -2.6110 3.1837 40 1 5.1572 -2.1315 2.3266 41 1 3.7906 -2.9905 4.2018 42 1 4.9483 -1.7676 4.7780 43 1 6.3821 -3.5426 5.4931 44 1 4.2012 -5.3283 4.6309 45 1 5.6604 -5.8222 5.5221 46 1 5.8876 -6.2780 3.0890 47 1 7.0758 -5.0699 3.6351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163904670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:13 Heat of formation + Delta-G solvation = 78.434846 kcal Electronic energy + Delta-G solvation = -29877.433115 eV Core-core repulsion = 26059.359285 eV Total energy + Delta-G solvation = -3818.073830 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.70402 -38.95111 -38.36191 -35.57052 -33.99319 -33.34688 -32.57911 -31.43326 -30.77236 -30.17006 -28.84047 -26.07865 -25.61853 -24.62970 -22.82520 -22.65013 -21.99546 -21.52679 -20.99253 -20.03740 -17.65326 -17.08798 -16.74311 -16.60453 -15.95246 -15.43303 -15.08250 -14.67279 -14.57657 -14.25114 -14.19928 -14.09142 -14.03547 -13.63443 -13.41398 -13.02496 -12.91109 -12.82648 -12.45927 -12.21041 -12.18134 -12.05001 -11.82227 -11.43605 -11.37241 -11.13589 -11.08648 -10.65866 -10.51671 -10.48221 -10.21947 -9.89005 -9.76742 -9.49586 -9.40709 -9.34674 -8.87159 -8.60110 -8.34270 -7.36956 -6.84084 -6.44058 -4.45505 1.04452 1.26221 2.62884 3.03378 3.04276 3.05978 3.22353 3.68829 3.86185 4.20517 4.36982 4.42360 4.59255 4.71348 4.78405 4.85406 4.97922 5.02196 5.08433 5.18901 5.26586 5.47959 5.49839 5.51893 5.66250 5.69883 5.83172 5.84625 5.90198 5.94857 5.97676 6.04281 6.08124 6.11389 6.14485 6.17523 6.23464 6.39934 6.43561 6.47172 6.70924 6.72511 6.97368 7.04314 7.04940 7.40673 7.63100 7.93413 7.97925 8.07105 8.33276 8.59500 8.83607 9.42188 9.97510 10.21330 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.004196 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.482039 B = 6671.098250 C = 6807.182550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.712 5.712 2 C 0.070 3.930 3 Si 0.903 3.097 4 H -0.261 1.261 5 H -0.273 1.273 6 H -0.272 1.272 7 C -0.421 4.421 8 H 0.081 0.919 9 C 0.197 3.803 10 N -0.448 5.448 11 C 0.031 3.969 12 C -0.085 4.085 13 N -0.499 5.499 14 C 0.261 3.739 15 N -0.718 5.718 16 C 0.188 3.812 17 C -0.144 4.144 18 C -0.058 4.058 19 C -0.182 4.182 20 C 0.098 3.902 21 N -0.481 5.481 22 C 0.154 3.846 23 C -0.042 4.042 24 C -0.141 4.141 25 C 0.057 3.943 26 N -0.685 5.685 27 C 0.057 3.943 28 C -0.143 4.143 29 H 0.274 0.726 30 H 0.124 0.876 31 H 0.122 0.878 32 H 0.402 0.598 33 H 0.063 0.937 34 H 0.059 0.941 35 H 0.135 0.865 36 H 0.132 0.868 37 H 0.152 0.848 38 H 0.099 0.901 39 H 0.067 0.933 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.076 0.924 43 H 0.337 0.663 44 H 0.074 0.926 45 H 0.073 0.927 46 H 0.062 0.938 47 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.564 -5.735 2.577 14.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.334 5.334 2 C -0.156 4.156 3 Si 0.727 3.273 4 H -0.184 1.184 5 H -0.198 1.198 6 H -0.197 1.197 7 C -0.455 4.455 8 H 0.098 0.902 9 C 0.063 3.937 10 N -0.166 5.166 11 C -0.132 4.132 12 C -0.239 4.239 13 N -0.220 5.220 14 C 0.015 3.985 15 N -0.361 5.361 16 C 0.062 3.938 17 C -0.146 4.146 18 C -0.084 4.084 19 C -0.202 4.202 20 C -0.060 4.060 21 N -0.190 5.190 22 C 0.016 3.984 23 C -0.061 4.061 24 C -0.180 4.180 25 C -0.073 4.073 26 N -0.313 5.313 27 C -0.073 4.073 28 C -0.182 4.182 29 H 0.085 0.915 30 H 0.141 0.859 31 H 0.140 0.860 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.153 0.847 36 H 0.150 0.850 37 H 0.169 0.831 38 H 0.117 0.883 39 H 0.086 0.914 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.094 0.906 43 H 0.154 0.846 44 H 0.092 0.908 45 H 0.091 0.909 46 H 0.081 0.919 47 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.052 -5.659 3.777 14.719 hybrid contribution 0.824 0.689 -1.904 2.186 sum 13.876 -4.970 1.874 14.858 Atomic orbital electron populations 1.70098 1.07142 1.27851 1.28306 1.25984 0.94876 1.00857 0.93868 0.86331 0.80777 0.81424 0.78741 1.18426 1.19778 1.19674 1.19229 0.93705 0.89339 1.43227 0.90150 1.19017 0.89318 0.91047 0.94352 1.69504 1.06261 1.24573 1.16268 1.23155 0.99687 0.90252 1.00097 1.22245 0.89568 0.97503 1.14607 1.67282 1.08977 1.28357 1.17424 1.19259 0.84719 0.91061 1.03509 1.43640 1.01823 1.05956 1.84638 1.19738 0.84224 0.88127 1.01718 1.20987 0.97722 1.02029 0.93854 1.21570 0.93806 0.94973 0.98058 1.22090 0.95668 1.02786 0.99651 1.22699 0.99847 0.95369 0.88062 1.67443 1.06828 1.13939 1.30761 1.21104 0.89747 0.93003 0.94570 1.20287 0.99299 0.96380 0.90126 1.22185 1.01404 0.95760 0.98672 1.22033 0.99501 0.95932 0.89835 1.60683 1.23246 1.02312 1.45067 1.22022 1.00872 0.90423 0.93958 1.22230 1.00728 0.98902 0.96368 0.91479 0.85882 0.86026 0.76052 0.91887 0.92314 0.84729 0.85002 0.83084 0.88320 0.91407 0.91053 0.90436 0.90594 0.84565 0.90761 0.90863 0.91884 0.91179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -18.40 11.48 55.56 0.64 -17.76 16 2 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 3 Si 0.90 17.90 29.56 -169.99 -5.03 12.88 16 4 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 5 H -0.27 -5.37 7.11 56.52 0.40 -4.97 16 6 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 7 C -0.42 -10.50 8.89 -37.90 -0.34 -10.84 16 8 H 0.08 1.84 6.12 -52.49 -0.32 1.52 16 9 C 0.20 5.14 6.56 -84.61 -0.56 4.58 16 10 N -0.45 -12.15 8.03 -10.79 -0.09 -12.24 16 11 C 0.03 0.75 11.21 -17.33 -0.19 0.56 16 12 C -0.09 -1.95 11.22 -17.11 -0.19 -2.15 16 13 N -0.50 -11.75 9.71 -11.67 -0.11 -11.86 16 14 C 0.26 6.14 7.51 -154.82 -1.16 4.98 16 15 N -0.72 -13.96 5.43 -61.07 -0.33 -14.29 16 16 C 0.19 3.08 4.94 -5.19 -0.03 3.06 16 17 C -0.14 -2.05 5.27 -104.48 -0.55 -2.60 16 18 C -0.06 -0.71 9.82 -39.28 -0.39 -1.10 16 19 C -0.18 -1.95 10.11 -39.44 -0.40 -2.35 16 20 C 0.10 1.11 11.18 -17.55 -0.20 0.91 16 21 N -0.48 -6.52 9.73 -9.47 -0.09 -6.61 16 22 C 0.15 2.17 5.47 -82.59 -0.45 1.72 16 23 C -0.04 -0.57 2.30 -91.65 -0.21 -0.78 16 24 C -0.14 -1.91 5.29 -26.65 -0.14 -2.05 16 25 C 0.06 0.74 6.55 -3.83 -0.03 0.71 16 26 N -0.69 -8.15 6.87 -113.81 -0.78 -8.93 16 27 C 0.06 0.66 6.55 -3.83 -0.03 0.63 16 28 C -0.14 -1.71 5.28 -26.65 -0.14 -1.85 16 29 H 0.27 6.42 8.29 -40.82 -0.34 6.08 16 30 H 0.12 2.63 8.06 -52.49 -0.42 2.20 16 31 H 0.12 2.42 8.06 -52.49 -0.42 2.00 16 32 H 0.40 7.75 6.45 -40.82 -0.26 7.48 16 33 H 0.06 1.08 6.72 -51.93 -0.35 0.73 16 34 H 0.06 0.99 8.03 -51.93 -0.42 0.58 16 35 H 0.13 1.49 8.06 -52.48 -0.42 1.07 16 36 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 37 H 0.15 1.27 8.06 -52.49 -0.42 0.85 16 38 H 0.10 1.56 5.56 -51.93 -0.29 1.27 16 39 H 0.07 0.91 7.98 -51.93 -0.41 0.49 16 40 H 0.07 1.08 8.14 -51.93 -0.42 0.65 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 42 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 43 H 0.34 3.55 8.86 -39.29 -0.35 3.21 16 44 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 45 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 47 H 0.07 0.85 7.97 -51.93 -0.41 0.44 16 LS Contribution 380.93 15.07 5.74 5.74 Total: -1.00 -29.25 380.93 -11.74 -40.99 By element: Atomic # 1 Polarization: 23.63 SS G_CDS: -6.60 Total: 17.03 kcal Atomic # 6 Polarization: 0.14 SS G_CDS: -5.09 Total: -4.95 kcal Atomic # 7 Polarization: -70.93 SS G_CDS: -0.77 Total: -71.70 kcal Atomic # 14 Polarization: 17.90 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.25 -11.74 -40.99 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163904670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.428 kcal (2) G-P(sol) polarization free energy of solvation -29.252 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.741 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds