Wall clock time and date at job start Sat Apr 11 2020 05:44:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30730 * 1 3 3 Si 1.86805 * 119.99900 * 2 1 4 4 H 1.48496 * 109.47205 * 179.97438 * 3 2 1 5 5 H 1.48498 * 109.47373 * 300.00269 * 3 2 1 6 6 H 1.48499 * 109.46873 * 60.00063 * 3 2 1 7 7 C 1.40118 * 120.00019 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99602 * 179.97438 * 7 2 1 9 9 C 1.40817 * 120.00039 * 359.97438 * 7 2 1 10 10 N 1.33908 * 120.27669 * 359.97438 * 9 7 2 11 11 C 1.31723 * 119.89249 * 179.97438 * 10 9 7 12 12 C 1.38965 * 120.47614 * 0.02562 * 11 10 9 13 13 N 1.32238 * 120.56812 * 0.02562 * 12 11 10 14 14 C 1.32615 * 120.08776 * 359.97438 * 13 12 11 15 15 N 1.37948 * 120.23427 * 179.97438 * 14 13 12 16 16 C 1.46494 * 119.99785 * 0.02562 * 15 14 13 17 17 C 1.50704 * 109.46947 * 179.97438 * 16 15 14 18 18 C 1.38665 * 120.42461 * 260.00139 * 17 16 15 19 19 C 1.38629 * 118.42502 * 180.02562 * 18 17 16 20 20 C 1.38226 * 119.16014 * 359.97438 * 19 18 17 21 21 N 1.31853 * 120.76289 * 0.02562 * 20 19 18 22 22 C 1.31892 * 121.72480 * 359.70014 * 21 20 19 23 23 C 1.50698 * 119.61603 * 180.31314 * 22 21 20 24 24 C 1.53119 * 109.52428 * 60.14286 * 23 22 21 25 25 C 1.53043 * 109.27897 * 182.50336 * 24 23 22 26 26 N 1.46850 * 109.57444 * 59.08127 * 25 24 23 27 27 C 1.46848 * 111.19878 * 298.29133 * 26 25 24 28 28 C 1.53042 * 109.52059 * 61.74378 * 27 26 25 29 29 H 0.97003 * 120.00336 * 0.02562 * 1 2 3 30 30 H 1.07998 * 119.75927 * 180.28337 * 11 10 9 31 31 H 1.07998 * 119.71012 * 179.97438 * 12 11 10 32 32 H 0.96996 * 119.99670 * 179.97438 * 15 14 13 33 33 H 1.08999 * 109.47491 * 299.99517 * 16 15 14 34 34 H 1.09004 * 109.47410 * 60.00015 * 16 15 14 35 35 H 1.08010 * 120.78660 * 359.97438 * 18 17 16 36 36 H 1.07994 * 120.41816 * 180.02562 * 19 18 17 37 37 H 1.08001 * 119.61837 * 179.97438 * 20 19 18 38 38 H 1.08997 * 109.52225 * 180.26639 * 23 22 21 39 39 H 1.09000 * 109.50775 * 302.37941 * 24 23 22 40 40 H 1.09002 * 109.50408 * 62.49769 * 24 23 22 41 41 H 1.09004 * 109.40994 * 299.06768 * 25 24 23 42 42 H 1.09001 * 109.46538 * 179.13071 * 25 24 23 43 43 H 1.00898 * 110.99601 * 62.39055 * 26 25 24 44 44 H 1.08997 * 109.46523 * 301.72486 * 27 26 25 45 45 H 1.08998 * 109.46265 * 181.75428 * 27 26 25 46 46 H 1.08999 * 109.50105 * 180.87957 * 28 27 26 47 47 H 1.08995 * 109.53523 * 60.77899 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3073 0.0000 0.0000 3 14 2.2413 1.6178 0.0000 4 1 3.7013 1.3465 0.0006 5 1 1.8825 2.3966 -1.2124 6 1 1.8825 2.3964 1.2125 7 6 2.0079 -1.2135 -0.0005 8 1 3.0879 -1.2134 -0.0010 9 6 1.3038 -2.4330 -0.0005 10 7 -0.0352 -2.4395 0.0005 11 6 -0.6862 -3.5846 0.0000 12 6 0.0067 -4.7892 -0.0011 13 7 1.3290 -4.8044 -0.0011 14 6 2.0070 -3.6647 -0.0006 15 7 3.3864 -3.6770 -0.0001 16 6 4.1075 -4.9522 -0.0007 17 6 5.5916 -4.6901 -0.0006 18 6 6.3192 -4.7719 -1.1781 19 6 7.6821 -4.5233 -1.1303 20 6 8.2664 -4.2038 0.0810 21 7 7.5431 -4.1350 1.1813 22 6 6.2435 -4.3600 1.1722 23 6 5.4617 -4.2616 2.4567 24 6 5.5898 -2.8462 3.0266 25 6 4.8460 -2.7699 4.3620 26 7 5.4138 -3.7485 5.2981 27 6 5.2585 -5.1186 4.7931 28 6 6.0161 -5.2654 3.4714 29 1 -0.4851 0.8400 -0.0004 30 1 -1.7661 -3.5873 -0.0038 31 1 -0.5395 -5.7209 -0.0011 32 1 3.8789 -2.8414 -0.0001 33 1 3.8388 -5.5220 0.8888 34 1 3.8394 -5.5209 -0.8912 35 1 5.8356 -5.0242 -2.1104 36 1 8.2797 -4.5777 -2.0282 37 1 9.3277 -4.0090 0.1268 38 1 4.4122 -4.4822 2.2621 39 1 6.6425 -2.6110 3.1837 40 1 5.1572 -2.1315 2.3266 41 1 3.7906 -2.9905 4.2018 42 1 4.9483 -1.7676 4.7780 43 1 6.3821 -3.5426 5.4931 44 1 4.2012 -5.3283 4.6309 45 1 5.6604 -5.8222 5.5221 46 1 5.8876 -6.2780 3.0890 47 1 7.0758 -5.0699 3.6351 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163904670.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:12 Heat of formation + Delta-G solvation = 59.997423 kcal Electronic energy + Delta-G solvation = -29878.232622 eV Core-core repulsion = 26059.359285 eV Total energy + Delta-G solvation = -3818.873337 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.74112 -40.76514 -39.37305 -37.05924 -35.83889 -34.36255 -33.93218 -33.21031 -31.80800 -31.37288 -30.32589 -27.86264 -27.05520 -25.62885 -24.10720 -23.85597 -23.39175 -23.10359 -22.30712 -21.09387 -19.51283 -18.59051 -17.85816 -17.67152 -17.65031 -16.84501 -16.37859 -15.89833 -15.79973 -15.61106 -15.44308 -15.39592 -15.20825 -15.04454 -14.71673 -14.54957 -14.05017 -13.98134 -13.88600 -13.82229 -13.24855 -13.20232 -13.15897 -12.99047 -12.90306 -12.40629 -12.18767 -12.13349 -11.92803 -11.72970 -11.55764 -11.53629 -11.29877 -11.20856 -10.76131 -10.45394 -10.36035 -9.86358 -9.34103 -9.22963 -8.61813 -8.27373 -6.33889 0.06242 0.29977 0.80281 1.25671 1.39997 1.51684 1.53823 2.19722 2.58147 2.87249 2.96866 3.23305 3.40907 3.53488 3.70620 3.86666 3.94162 3.95364 4.06233 4.10228 4.17547 4.23490 4.25851 4.32423 4.43986 4.44374 4.49948 4.54586 4.62450 4.70851 4.78298 4.82025 4.88904 4.92883 4.95147 5.01404 5.08607 5.12630 5.15415 5.17235 5.22086 5.33504 5.40621 5.76055 5.81036 6.02335 6.10725 6.27757 6.51252 6.63982 6.75804 6.98672 7.02561 7.59373 8.10051 8.42250 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.008863 B = 0.004196 C = 0.004112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3158.482039 B = 6671.098250 C = 6807.182550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.753 5.753 2 C 0.026 3.974 3 Si 0.979 3.021 4 H -0.251 1.251 5 H -0.268 1.268 6 H -0.268 1.268 7 C -0.441 4.441 8 H 0.092 0.908 9 C 0.163 3.837 10 N -0.485 5.485 11 C 0.008 3.992 12 C -0.082 4.082 13 N -0.510 5.510 14 C 0.262 3.738 15 N -0.707 5.707 16 C 0.198 3.802 17 C -0.162 4.162 18 C -0.063 4.063 19 C -0.171 4.171 20 C 0.097 3.903 21 N -0.496 5.496 22 C 0.145 3.855 23 C -0.039 4.039 24 C -0.131 4.131 25 C 0.062 3.938 26 N -0.684 5.684 27 C 0.060 3.940 28 C -0.132 4.132 29 H 0.279 0.721 30 H 0.144 0.856 31 H 0.153 0.847 32 H 0.402 0.598 33 H 0.052 0.948 34 H 0.054 0.946 35 H 0.146 0.854 36 H 0.168 0.832 37 H 0.185 0.815 38 H 0.071 0.929 39 H 0.074 0.926 40 H 0.050 0.950 41 H 0.051 0.949 42 H 0.085 0.915 43 H 0.349 0.651 44 H 0.057 0.943 45 H 0.095 0.905 46 H 0.063 0.937 47 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.599 -5.748 2.318 17.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.376 5.376 2 C -0.196 4.196 3 Si 0.799 3.201 4 H -0.174 1.174 5 H -0.193 1.193 6 H -0.193 1.193 7 C -0.476 4.476 8 H 0.110 0.890 9 C 0.029 3.971 10 N -0.203 5.203 11 C -0.154 4.154 12 C -0.235 4.235 13 N -0.233 5.233 14 C 0.015 3.985 15 N -0.348 5.348 16 C 0.073 3.927 17 C -0.164 4.164 18 C -0.089 4.089 19 C -0.190 4.190 20 C -0.060 4.060 21 N -0.204 5.204 22 C 0.007 3.993 23 C -0.059 4.059 24 C -0.171 4.171 25 C -0.068 4.068 26 N -0.313 5.313 27 C -0.070 4.070 28 C -0.171 4.171 29 H 0.090 0.910 30 H 0.161 0.839 31 H 0.171 0.829 32 H 0.239 0.761 33 H 0.070 0.930 34 H 0.072 0.928 35 H 0.163 0.837 36 H 0.185 0.815 37 H 0.202 0.798 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.069 0.931 41 H 0.070 0.930 42 H 0.103 0.897 43 H 0.167 0.833 44 H 0.075 0.925 45 H 0.113 0.887 46 H 0.081 0.919 47 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 16.106 -5.712 3.522 17.448 hybrid contribution -0.056 0.576 -1.849 1.937 sum 16.050 -5.136 1.673 16.935 Atomic orbital electron populations 1.70203 1.08907 1.29124 1.29390 1.26890 0.95605 1.04253 0.92861 0.85194 0.79651 0.76458 0.78755 1.17379 1.19296 1.19264 1.19568 0.94376 0.89789 1.43820 0.89019 1.19447 0.89664 0.92506 0.95519 1.69425 1.07160 1.26197 1.17534 1.23523 1.00796 0.90191 1.00873 1.22736 0.89640 0.98425 1.12700 1.67411 1.09337 1.28130 1.18404 1.19417 0.86280 0.90547 1.02290 1.43692 1.00508 1.07273 1.83291 1.19663 0.85830 0.86376 1.00840 1.20786 0.96173 1.04367 0.95101 1.21805 0.94826 0.94618 0.97693 1.22450 0.94934 1.00825 1.00830 1.23348 1.01230 0.93802 0.87636 1.67470 1.06344 1.14575 1.32054 1.21045 0.90298 0.93603 0.94332 1.20176 0.97888 0.96811 0.90984 1.22085 1.01469 0.95262 0.98267 1.21919 0.98020 0.96776 0.90104 1.60656 1.24077 1.02162 1.44442 1.22023 0.99964 0.90654 0.94378 1.22138 1.00731 0.98311 0.95934 0.90984 0.83900 0.82931 0.76071 0.92958 0.92751 0.83651 0.81468 0.79780 0.91100 0.90716 0.93144 0.93048 0.89698 0.83260 0.92468 0.88705 0.91867 0.90701 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -40.05 11.48 21.86 0.25 -39.80 16 2 C 0.03 1.28 5.50 85.31 0.47 1.75 16 3 Si 0.98 36.89 29.56 68.60 2.03 38.92 16 4 H -0.25 -8.92 7.11 99.48 0.71 -8.21 16 5 H -0.27 -9.83 7.11 99.48 0.71 -9.13 16 6 H -0.27 -9.85 7.11 99.48 0.71 -9.14 16 7 C -0.44 -22.60 8.89 23.36 0.21 -22.40 16 8 H 0.09 4.29 6.12 -2.91 -0.02 4.27 16 9 C 0.16 8.83 6.56 40.35 0.26 9.09 16 10 N -0.48 -27.20 8.03 -188.06 -1.51 -28.71 16 11 C 0.01 0.38 11.21 84.88 0.95 1.34 16 12 C -0.08 -3.76 11.22 84.81 0.95 -2.81 16 13 N -0.51 -24.42 9.71 -190.83 -1.85 -26.28 16 14 C 0.26 12.69 7.51 134.03 1.01 13.70 16 15 N -0.71 -28.20 5.43 -347.12 -1.89 -30.09 16 16 C 0.20 6.62 4.94 85.64 0.42 7.04 16 17 C -0.16 -4.52 5.27 -19.77 -0.10 -4.62 16 18 C -0.06 -1.44 9.82 22.47 0.22 -1.22 16 19 C -0.17 -3.04 10.11 22.36 0.23 -2.82 16 20 C 0.10 1.87 11.18 84.69 0.95 2.82 16 21 N -0.50 -12.38 9.73 -183.88 -1.79 -14.17 16 22 C 0.14 3.97 5.47 42.54 0.23 4.20 16 23 C -0.04 -1.09 2.30 -11.46 -0.03 -1.11 16 24 C -0.13 -3.58 5.29 30.65 0.16 -3.42 16 25 C 0.06 1.63 6.55 86.33 0.57 2.20 16 26 N -0.68 -15.76 6.87 -513.98 -3.53 -19.29 16 27 C 0.06 1.33 6.55 86.33 0.57 1.90 16 28 C -0.13 -3.06 5.28 30.65 0.16 -2.90 16 29 H 0.28 13.45 8.29 -92.71 -0.77 12.68 16 30 H 0.14 6.21 8.06 -2.91 -0.02 6.19 16 31 H 0.15 5.93 8.06 -2.91 -0.02 5.91 16 32 H 0.40 15.89 6.45 -92.71 -0.60 15.29 16 33 H 0.05 1.86 6.72 -2.39 -0.02 1.85 16 34 H 0.05 1.86 8.03 -2.38 -0.02 1.84 16 35 H 0.15 2.93 8.06 -2.91 -0.02 2.90 16 36 H 0.17 1.79 8.06 -2.91 -0.02 1.77 16 37 H 0.19 2.25 8.06 -2.91 -0.02 2.22 16 38 H 0.07 2.35 5.56 -2.39 -0.01 2.34 16 39 H 0.07 1.93 7.98 -2.39 -0.02 1.91 16 40 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 41 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 42 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 43 H 0.35 6.77 8.86 -89.70 -0.79 5.97 16 44 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 45 H 0.09 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.06 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.69 7.97 -2.39 -0.02 1.67 16 Total: -1.00 -65.10 380.93 -1.44 -66.54 By element: Atomic # 1 Polarization: 50.51 SS G_CDS: -0.38 Total: 50.13 kcal Atomic # 6 Polarization: -4.47 SS G_CDS: 7.23 Total: 2.76 kcal Atomic # 7 Polarization: -148.02 SS G_CDS: -10.32 Total: -158.34 kcal Atomic # 14 Polarization: 36.89 SS G_CDS: 2.03 Total: 38.92 kcal Total: -65.10 -1.44 -66.54 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163904670.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.538 kcal (2) G-P(sol) polarization free energy of solvation -65.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.439 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.540 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds