Wall clock time and date at job start Sat Apr 11 2020 05:44:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48498 * 109.47061 * 269.99828 * 3 2 1 5 5 H 1.48498 * 109.47125 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.47010 * 150.00054 * 3 2 1 7 7 C 1.37876 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00144 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99928 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00226 * 79.07180 * 10 9 7 12 12 C 1.50700 * 109.47079 * 293.95661 * 11 10 9 13 13 C 1.38678 * 120.41331 * 270.24681 * 12 11 10 14 14 C 1.38628 * 118.41545 * 180.24200 * 13 12 11 15 15 C 1.38228 * 119.16078 * 359.75617 * 14 13 12 16 16 N 1.31850 * 120.76571 * 359.97438 * 15 14 13 17 17 C 1.31878 * 121.72768 * 359.97438 * 16 15 14 18 18 C 1.38543 * 110.99819 * 203.02718 * 10 9 7 19 19 N 1.32847 * 120.44319 * 298.44552 * 18 10 9 20 20 C 1.31759 * 120.54428 * 180.40566 * 19 18 10 21 21 N 1.31628 * 121.71663 * 359.82874 * 20 19 18 22 22 C 1.33058 * 121.19973 * 359.37474 * 21 20 19 23 23 C 1.37229 * 119.10415 * 1.41959 * 22 21 20 24 24 C 1.50563 * 123.25024 * 177.14733 * 23 22 21 25 25 C 1.52908 * 111.11832 * 29.49568 * 24 23 22 26 26 N 1.46865 * 108.51171 * 268.82287 * 25 24 23 27 27 C 1.46409 * 111.54808 * 61.10321 * 26 25 24 28 28 C 1.50448 * 118.63792 * 182.44760 * 22 21 20 29 29 H 0.97002 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47188 * 60.00023 * 9 7 2 31 31 H 1.09002 * 109.47248 * 300.00468 * 9 7 2 32 32 H 1.08996 * 109.46980 * 173.95132 * 11 10 9 33 33 H 1.08998 * 109.46775 * 53.95598 * 11 10 9 34 34 H 1.07991 * 120.79353 * 359.97438 * 13 12 11 35 35 H 1.07996 * 120.41869 * 179.72972 * 14 13 12 36 36 H 1.08007 * 119.61284 * 180.02562 * 15 14 13 37 37 H 1.08005 * 119.62350 * 179.97438 * 17 16 15 38 38 H 1.08001 * 119.13585 * 179.53938 * 20 19 18 39 39 H 1.09000 * 109.15045 * 149.91798 * 24 23 22 40 40 H 1.08996 * 109.14896 * 269.07733 * 24 23 22 41 41 H 1.09007 * 109.63301 * 28.52429 * 25 24 23 42 42 H 1.09002 * 109.63180 * 149.11493 * 25 24 23 43 43 H 1.00896 * 111.00408 * 185.46471 * 26 25 24 44 44 H 1.09004 * 109.76508 * 152.78239 * 27 26 25 45 45 H 1.08999 * 109.76814 * 273.55485 * 27 26 25 46 46 H 1.08999 * 109.26152 * 108.78944 * 28 22 21 47 47 H 1.09000 * 109.25374 * 349.35688 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 3.9310 -3.1624 -1.3463 12 6 2.4885 -3.2921 -1.7631 13 6 1.7758 -4.4465 -1.4758 14 6 0.4529 -4.5235 -1.8828 15 6 -0.1093 -3.4527 -2.5522 16 7 0.5973 -2.3683 -2.8035 17 6 1.8575 -2.2597 -2.4305 18 6 5.2891 -2.6503 0.5055 19 7 6.2858 -2.0136 -0.0995 20 6 7.5128 -2.0864 0.3749 21 7 7.7966 -2.7816 1.4561 22 6 6.8488 -3.4331 2.1251 23 6 5.5588 -3.3993 1.6581 24 6 4.4267 -4.1522 2.3049 25 6 4.6618 -4.3173 3.8067 26 7 5.3726 -5.5827 4.0311 27 6 6.6761 -5.5928 3.3645 28 6 7.2277 -4.1637 3.3845 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8745 -0.6808 -0.8905 32 1 4.3974 -4.1475 -1.3402 33 1 4.4558 -2.5163 -2.0500 34 1 2.2416 -5.2676 -0.9513 35 1 -0.1310 -5.4091 -1.6799 36 1 -1.1395 -3.5048 -2.8723 37 1 2.4046 -1.3558 -2.6544 38 1 8.3072 -1.5659 -0.1393 39 1 3.4971 -3.6056 2.1464 40 1 4.3439 -5.1372 1.8456 41 1 5.2650 -3.4880 4.1763 42 1 3.7043 -4.3378 4.3272 43 1 5.4692 -5.7733 5.0172 44 1 7.3567 -6.2581 3.8958 45 1 6.5606 -5.9289 2.3341 46 1 6.8199 -3.6330 4.2447 47 1 8.3140 -4.1989 3.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001164004667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:23 Heat of formation + Delta-G solvation = 120.960329 kcal Electronic energy + Delta-G solvation = -30479.361617 eV Core-core repulsion = 26663.131831 eV Total energy + Delta-G solvation = -3816.229787 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.35661 -39.46105 -38.18513 -37.06044 -33.44845 -32.89505 -32.54945 -31.59766 -30.89033 -30.28923 -28.21359 -27.13515 -25.61032 -25.21524 -22.74499 -22.68441 -22.05680 -21.54484 -20.53678 -19.99548 -17.82726 -17.34294 -16.58492 -16.28259 -16.06248 -15.97480 -15.53333 -15.22752 -14.57995 -14.55572 -14.32304 -13.99462 -13.69477 -13.46079 -13.07748 -12.91724 -12.72639 -12.65845 -12.44059 -12.27262 -12.18545 -12.05121 -11.66104 -11.57750 -11.56570 -11.28816 -10.94965 -10.77741 -10.56317 -10.48167 -10.13596 -9.94600 -9.55164 -9.09791 -8.94217 -8.87902 -8.63902 -8.52382 -8.49911 -8.06491 -7.89677 -6.09498 -4.04220 1.11913 1.17285 1.99252 2.19488 3.24052 3.31861 3.35127 3.86410 3.97566 4.01248 4.17107 4.36286 4.44845 4.70055 4.82925 4.86547 4.95786 5.06716 5.15492 5.23075 5.26012 5.28604 5.33021 5.43999 5.54331 5.59792 5.64168 5.66947 5.73326 5.79219 5.92731 5.94212 6.02234 6.05623 6.13463 6.38088 6.42574 6.56000 6.57442 6.69050 6.71111 6.88106 6.88281 7.07344 7.19078 7.24794 7.45436 7.46943 7.58005 7.81093 8.29193 8.51687 8.95528 8.99383 9.48839 11.00679 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.004537 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.452379 B = 6169.361448 C = 7033.357005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.874 5.874 2 C 0.083 3.917 3 Si 0.861 3.139 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.507 4.507 8 H 0.090 0.910 9 C 0.173 3.827 10 N -0.473 5.473 11 C 0.121 3.879 12 C -0.120 4.120 13 C -0.063 4.063 14 C -0.197 4.197 15 C 0.104 3.896 16 N -0.483 5.483 17 C 0.182 3.818 18 C 0.359 3.641 19 N -0.550 5.550 20 C 0.293 3.707 21 N -0.533 5.533 22 C 0.168 3.832 23 C -0.150 4.150 24 C -0.064 4.064 25 C 0.051 3.949 26 N -0.691 5.691 27 C 0.067 3.933 28 C -0.109 4.109 29 H 0.264 0.736 30 H 0.021 0.979 31 H 0.002 0.998 32 H 0.066 0.934 33 H 0.051 0.949 34 H 0.119 0.881 35 H 0.119 0.881 36 H 0.139 0.861 37 H 0.139 0.861 38 H 0.189 0.811 39 H 0.107 0.893 40 H 0.086 0.914 41 H 0.041 0.959 42 H 0.084 0.916 43 H 0.339 0.661 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.091 0.909 47 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.998 -11.057 3.991 16.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.122 4.122 3 Si 0.688 3.312 4 H -0.200 1.200 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.545 4.545 8 H 0.108 0.892 9 C 0.048 3.952 10 N -0.197 5.197 11 C -0.006 4.006 12 C -0.123 4.123 13 C -0.089 4.089 14 C -0.218 4.218 15 C -0.053 4.053 16 N -0.191 5.191 17 C 0.024 3.976 18 C 0.120 3.880 19 N -0.267 5.267 20 C 0.003 3.997 21 N -0.248 5.248 22 C 0.024 3.976 23 C -0.155 4.155 24 C -0.103 4.103 25 C -0.077 4.077 26 N -0.321 5.321 27 C -0.064 4.064 28 C -0.148 4.148 29 H 0.074 0.926 30 H 0.039 0.961 31 H 0.020 0.980 32 H 0.084 0.916 33 H 0.070 0.930 34 H 0.137 0.863 35 H 0.137 0.863 36 H 0.156 0.844 37 H 0.157 0.843 38 H 0.205 0.795 39 H 0.125 0.875 40 H 0.104 0.896 41 H 0.058 0.942 42 H 0.103 0.897 43 H 0.157 0.843 44 H 0.095 0.905 45 H 0.093 0.907 46 H 0.109 0.891 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 10.515 -10.340 2.847 15.020 hybrid contribution 1.212 1.281 1.104 2.080 sum 11.727 -9.060 3.951 15.337 Atomic orbital electron populations 1.69856 1.05846 1.26751 1.48651 1.24750 0.94562 0.98129 0.94761 0.87094 0.80358 0.84950 0.78793 1.19996 1.21127 1.19601 1.21004 0.87697 0.95083 1.50720 0.89170 1.20281 0.97506 0.81312 0.96060 1.60273 1.12077 1.24164 1.23137 1.20739 0.93218 0.98667 0.88007 1.20261 0.96260 0.95573 1.00159 1.21109 0.93967 0.97211 0.96632 1.21790 0.96127 1.00624 1.03220 1.22459 0.98940 0.88910 0.94979 1.67613 1.06947 1.23611 1.20943 1.22179 0.90027 0.95190 0.90177 1.20619 0.89570 0.87752 0.90030 1.68681 1.01699 1.21904 1.34429 1.24588 0.92643 0.92823 0.89642 1.68368 1.37034 1.10023 1.09370 1.21050 0.88263 0.92999 0.95259 1.21100 0.96140 1.00738 0.97555 1.20356 0.96813 1.00168 0.92946 1.22186 0.98523 0.89907 0.97100 1.60365 1.19847 1.34927 1.17007 1.22022 0.89558 0.93696 1.01080 1.21252 1.03019 0.96913 0.93651 0.92595 0.96075 0.97993 0.91587 0.93035 0.86335 0.86330 0.84381 0.84342 0.79469 0.87517 0.89562 0.94151 0.89749 0.84345 0.90462 0.90681 0.89118 0.89411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.27 13.96 55.43 0.77 -24.49 16 2 C 0.08 2.24 5.47 -17.82 -0.10 2.14 16 3 Si 0.86 21.00 27.47 -169.99 -4.67 16.33 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 5 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 6 H -0.27 -6.57 6.54 56.52 0.37 -6.20 16 7 C -0.51 -13.03 6.43 -34.44 -0.22 -13.25 16 8 H 0.09 2.54 6.34 -52.49 -0.33 2.21 16 9 C 0.17 3.97 3.39 -4.98 -0.02 3.95 16 10 N -0.47 -9.20 3.31 -175.64 -0.58 -9.78 16 11 C 0.12 2.15 4.89 -4.97 -0.02 2.13 16 12 C -0.12 -2.27 3.55 -104.48 -0.37 -2.64 16 13 C -0.06 -1.09 9.75 -39.27 -0.38 -1.47 16 14 C -0.20 -3.34 10.11 -39.44 -0.40 -3.74 16 15 C 0.10 1.96 11.18 -17.55 -0.20 1.76 16 16 N -0.48 -10.49 10.36 -13.25 -0.14 -10.63 16 17 C 0.18 3.84 7.64 -17.55 -0.13 3.71 16 18 C 0.36 6.48 5.11 -154.73 -0.79 5.69 16 19 N -0.55 -9.77 10.03 -13.76 -0.14 -9.91 16 20 C 0.29 4.46 12.29 -92.33 -1.13 3.33 16 21 N -0.53 -8.02 10.29 -11.10 -0.11 -8.14 16 22 C 0.17 2.39 6.03 -82.55 -0.50 1.90 16 23 C -0.15 -2.35 5.51 -104.36 -0.57 -2.93 16 24 C -0.06 -0.92 5.02 -28.00 -0.14 -1.06 16 25 C 0.05 0.59 6.22 -3.89 -0.02 0.56 16 26 N -0.69 -6.65 6.75 -114.11 -0.77 -7.42 16 27 C 0.07 0.62 6.44 -3.99 -0.03 0.59 16 28 C -0.11 -1.16 5.36 -27.90 -0.15 -1.31 16 29 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 30 H 0.02 0.52 6.92 -51.93 -0.36 0.16 16 31 H 0.00 0.05 7.21 -51.93 -0.37 -0.32 16 32 H 0.07 1.06 8.01 -51.93 -0.42 0.64 16 33 H 0.05 0.93 7.88 -51.93 -0.41 0.53 16 34 H 0.12 1.77 8.06 -52.49 -0.42 1.35 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.21 16 36 H 0.14 2.24 8.06 -52.48 -0.42 1.82 16 37 H 0.14 3.01 7.94 -52.48 -0.42 2.59 16 38 H 0.19 2.21 8.06 -52.49 -0.42 1.78 16 39 H 0.11 1.80 7.37 -51.93 -0.38 1.42 16 40 H 0.09 1.22 7.98 -51.93 -0.41 0.80 16 41 H 0.04 0.47 5.29 -51.92 -0.27 0.20 16 42 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.34 2.53 8.90 -39.29 -0.35 2.18 16 44 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 45 H 0.07 0.82 7.70 -51.93 -0.40 0.42 16 46 H 0.09 0.92 5.86 -51.93 -0.30 0.62 16 47 H 0.09 0.86 8.09 -51.93 -0.42 0.44 16 LS Contribution 369.61 15.07 5.57 5.57 Total: -1.00 -30.66 369.61 -11.80 -42.46 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -6.56 Total: 6.63 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -5.18 Total: -0.63 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -0.97 Total: -70.37 kcal Atomic # 14 Polarization: 21.00 SS G_CDS: -4.67 Total: 16.33 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.66 -11.80 -42.46 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 163.423 kcal (2) G-P(sol) polarization free energy of solvation -30.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 132.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.462 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds