Wall clock time and date at job start Sat Apr 11 2020 05:44:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86802 * 120.00050 * 2 1 4 4 H 1.48498 * 109.47061 * 269.99828 * 3 2 1 5 5 H 1.48498 * 109.47125 * 29.99843 * 3 2 1 6 6 H 1.48503 * 109.47010 * 150.00054 * 3 2 1 7 7 C 1.37876 * 119.99758 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00144 * 0.02562 * 7 2 1 9 9 C 1.50708 * 119.99928 * 179.97438 * 7 2 1 10 10 N 1.46895 * 109.47107 * 180.02562 * 9 7 2 11 11 C 1.46902 * 111.00226 * 79.07180 * 10 9 7 12 12 C 1.50700 * 109.47079 * 293.95661 * 11 10 9 13 13 C 1.38678 * 120.41331 * 270.24681 * 12 11 10 14 14 C 1.38628 * 118.41545 * 180.24200 * 13 12 11 15 15 C 1.38228 * 119.16078 * 359.75617 * 14 13 12 16 16 N 1.31850 * 120.76571 * 359.97438 * 15 14 13 17 17 C 1.31878 * 121.72768 * 359.97438 * 16 15 14 18 18 C 1.38543 * 110.99819 * 203.02718 * 10 9 7 19 19 N 1.32847 * 120.44319 * 298.44552 * 18 10 9 20 20 C 1.31759 * 120.54428 * 180.40566 * 19 18 10 21 21 N 1.31628 * 121.71663 * 359.82874 * 20 19 18 22 22 C 1.33058 * 121.19973 * 359.37474 * 21 20 19 23 23 C 1.37229 * 119.10415 * 1.41959 * 22 21 20 24 24 C 1.50563 * 123.25024 * 177.14733 * 23 22 21 25 25 C 1.52908 * 111.11832 * 29.49568 * 24 23 22 26 26 N 1.46865 * 108.51171 * 268.82287 * 25 24 23 27 27 C 1.46409 * 111.54808 * 61.10321 * 26 25 24 28 28 C 1.50448 * 118.63792 * 182.44760 * 22 21 20 29 29 H 0.97002 * 120.00373 * 359.97438 * 1 2 3 30 30 H 1.08999 * 109.47188 * 60.00023 * 9 7 2 31 31 H 1.09002 * 109.47248 * 300.00468 * 9 7 2 32 32 H 1.08996 * 109.46980 * 173.95132 * 11 10 9 33 33 H 1.08998 * 109.46775 * 53.95598 * 11 10 9 34 34 H 1.07991 * 120.79353 * 359.97438 * 13 12 11 35 35 H 1.07996 * 120.41869 * 179.72972 * 14 13 12 36 36 H 1.08007 * 119.61284 * 180.02562 * 15 14 13 37 37 H 1.08005 * 119.62350 * 179.97438 * 17 16 15 38 38 H 1.08001 * 119.13585 * 179.53938 * 20 19 18 39 39 H 1.09000 * 109.15045 * 149.91798 * 24 23 22 40 40 H 1.08996 * 109.14896 * 269.07733 * 24 23 22 41 41 H 1.09007 * 109.63301 * 28.52429 * 25 24 23 42 42 H 1.09002 * 109.63180 * 149.11493 * 25 24 23 43 43 H 1.00896 * 111.00408 * 185.46471 * 26 25 24 44 44 H 1.09004 * 109.76508 * 152.78239 * 27 26 25 45 45 H 1.08999 * 109.76814 * 273.55485 * 27 26 25 46 46 H 1.08999 * 109.26152 * 108.78944 * 28 22 21 47 47 H 1.09000 * 109.25374 * 349.35688 * 28 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1941 0.0005 8 1 1.4644 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0000 10 7 4.0011 -2.5791 0.0001 11 6 3.9310 -3.1624 -1.3463 12 6 2.4885 -3.2921 -1.7631 13 6 1.7758 -4.4465 -1.4758 14 6 0.4529 -4.5235 -1.8828 15 6 -0.1093 -3.4527 -2.5522 16 7 0.5973 -2.3683 -2.8035 17 6 1.8575 -2.2597 -2.4305 18 6 5.2891 -2.6503 0.5055 19 7 6.2858 -2.0136 -0.0995 20 6 7.5128 -2.0864 0.3749 21 7 7.7966 -2.7816 1.4561 22 6 6.8488 -3.4331 2.1251 23 6 5.5588 -3.3993 1.6581 24 6 4.4267 -4.1522 2.3049 25 6 4.6618 -4.3173 3.8067 26 7 5.3726 -5.5827 4.0311 27 6 6.6761 -5.5928 3.3645 28 6 7.2277 -4.1637 3.3845 29 1 -0.4851 0.8400 0.0004 30 1 3.8752 -0.6797 0.8894 31 1 3.8745 -0.6808 -0.8905 32 1 4.3974 -4.1475 -1.3402 33 1 4.4558 -2.5163 -2.0500 34 1 2.2416 -5.2676 -0.9513 35 1 -0.1310 -5.4091 -1.6799 36 1 -1.1395 -3.5048 -2.8723 37 1 2.4046 -1.3558 -2.6544 38 1 8.3072 -1.5659 -0.1393 39 1 3.4971 -3.6056 2.1464 40 1 4.3439 -5.1372 1.8456 41 1 5.2650 -3.4880 4.1763 42 1 3.7043 -4.3378 4.3272 43 1 5.4692 -5.7733 5.0172 44 1 7.3567 -6.2581 3.8958 45 1 6.5606 -5.9289 2.3341 46 1 6.8199 -3.6330 4.2447 47 1 8.3140 -4.1989 3.4666 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001164004667.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:22 Heat of formation + Delta-G solvation = 100.777084 kcal Electronic energy + Delta-G solvation = -30480.236829 eV Core-core repulsion = 26663.131831 eV Total energy + Delta-G solvation = -3817.104998 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.57325 -40.94632 -39.21814 -38.45165 -34.95706 -34.37832 -33.95395 -33.04154 -32.17331 -31.56928 -29.99564 -28.25712 -26.73825 -26.52866 -24.33089 -24.15206 -23.42988 -22.87021 -21.79182 -21.15183 -19.22718 -18.92368 -17.92924 -17.73984 -17.17933 -17.10025 -16.92883 -16.71540 -16.20029 -15.80541 -15.71608 -15.28309 -14.96809 -14.76115 -14.64628 -14.30926 -14.15554 -13.98367 -13.91587 -13.64861 -13.59863 -13.33840 -13.08058 -12.83215 -12.64517 -12.52835 -12.35373 -12.20809 -12.17999 -12.00043 -11.66235 -11.56432 -11.23496 -10.75443 -10.42820 -10.33112 -10.10081 -10.01901 -9.65395 -9.44504 -9.31528 -8.20419 -6.15910 -0.15396 -0.02119 0.50617 0.72977 1.26359 1.30777 1.35777 2.31849 2.58970 2.65490 3.01853 3.11204 3.24167 3.29016 3.38446 3.68422 3.75771 3.80677 3.94108 4.05307 4.08402 4.15792 4.16356 4.29914 4.32893 4.36465 4.46048 4.52848 4.63318 4.66223 4.68010 4.72794 4.79963 4.84726 4.95584 4.99761 5.11597 5.12931 5.15574 5.26614 5.42927 5.46477 5.49063 5.59352 5.77984 5.98563 6.04922 6.09830 6.18094 6.53742 6.61803 6.85389 7.06952 7.39241 7.43067 8.92203 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011115 B = 0.004537 C = 0.003980 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2518.452379 B = 6169.361448 C = 7033.357005 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.037 3.963 3 Si 0.909 3.091 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.269 1.269 7 C -0.484 4.484 8 H 0.064 0.936 9 C 0.191 3.809 10 N -0.471 5.471 11 C 0.126 3.874 12 C -0.124 4.124 13 C -0.064 4.064 14 C -0.184 4.184 15 C 0.083 3.917 16 N -0.516 5.516 17 C 0.158 3.842 18 C 0.331 3.669 19 N -0.574 5.574 20 C 0.289 3.711 21 N -0.534 5.534 22 C 0.172 3.828 23 C -0.155 4.155 24 C -0.056 4.056 25 C 0.059 3.941 26 N -0.691 5.691 27 C 0.072 3.928 28 C -0.105 4.105 29 H 0.261 0.739 30 H 0.004 0.996 31 H -0.009 1.009 32 H 0.088 0.912 33 H 0.043 0.957 34 H 0.148 0.852 35 H 0.158 0.842 36 H 0.160 0.840 37 H 0.117 0.883 38 H 0.219 0.781 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.041 0.959 42 H 0.089 0.911 43 H 0.356 0.644 44 H 0.108 0.892 45 H 0.059 0.941 46 H 0.100 0.900 47 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.909 -13.328 5.647 19.395 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.163 4.163 3 Si 0.736 3.264 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.193 1.193 7 C -0.523 4.523 8 H 0.082 0.918 9 C 0.065 3.935 10 N -0.194 5.194 11 C -0.001 4.001 12 C -0.126 4.126 13 C -0.090 4.090 14 C -0.203 4.203 15 C -0.073 4.073 16 N -0.225 5.225 17 C 0.000 4.000 18 C 0.094 3.906 19 N -0.292 5.292 20 C 0.000 4.000 21 N -0.248 5.248 22 C 0.028 3.972 23 C -0.160 4.160 24 C -0.094 4.094 25 C -0.070 4.070 26 N -0.323 5.323 27 C -0.058 4.058 28 C -0.144 4.144 29 H 0.070 0.930 30 H 0.022 0.978 31 H 0.009 0.991 32 H 0.107 0.893 33 H 0.061 0.939 34 H 0.166 0.834 35 H 0.176 0.824 36 H 0.178 0.822 37 H 0.135 0.865 38 H 0.235 0.765 39 H 0.093 0.907 40 H 0.106 0.894 41 H 0.058 0.942 42 H 0.107 0.893 43 H 0.176 0.824 44 H 0.127 0.873 45 H 0.077 0.923 46 H 0.118 0.882 47 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 12.453 -12.625 4.510 18.298 hybrid contribution 0.674 1.829 0.573 2.031 sum 13.127 -10.796 5.083 17.740 Atomic orbital electron populations 1.69969 1.07107 1.27059 1.51326 1.25298 0.95043 1.00786 0.95170 0.86310 0.79334 0.82097 0.78673 1.19902 1.20946 1.19349 1.20967 0.88908 0.93710 1.48681 0.91779 1.19874 0.95610 0.83522 0.94478 1.60113 1.13735 1.21683 1.23872 1.20730 0.92729 0.99432 0.87176 1.20356 0.96817 0.95713 0.99741 1.21506 0.94229 0.97249 0.96025 1.22211 0.96132 1.01088 1.00913 1.22949 0.99905 0.88894 0.95593 1.67510 1.07481 1.25437 1.22082 1.21991 0.90307 0.95513 0.92167 1.20688 0.89022 0.89661 0.91273 1.68623 1.02597 1.22718 1.35284 1.25199 0.92444 0.92619 0.89758 1.68499 1.37064 1.09955 1.09296 1.21668 0.87485 0.92095 0.95998 1.21273 0.97330 1.00669 0.96743 1.20243 0.94846 0.99331 0.95004 1.22044 0.99212 0.90877 0.94877 1.60253 1.20034 1.33565 1.18409 1.22026 0.89801 0.93247 1.00709 1.21367 1.03998 0.97258 0.91748 0.92957 0.97799 0.99101 0.89343 0.93886 0.83403 0.82393 0.82250 0.86512 0.76529 0.90655 0.89439 0.94154 0.89285 0.82424 0.87332 0.92293 0.88204 0.88058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.66 13.96 21.45 0.30 -54.36 16 2 C 0.04 2.09 5.47 84.65 0.46 2.55 16 3 Si 0.91 44.53 27.47 68.60 1.88 46.41 16 4 H -0.27 -13.23 7.11 99.48 0.71 -12.53 16 5 H -0.28 -13.72 7.11 99.48 0.71 -13.01 16 6 H -0.27 -12.92 6.54 99.48 0.65 -12.27 16 7 C -0.48 -25.71 6.43 25.60 0.16 -25.55 16 8 H 0.06 3.72 6.34 -2.91 -0.02 3.71 16 9 C 0.19 9.01 3.39 85.56 0.29 9.30 16 10 N -0.47 -18.57 3.31 -709.62 -2.35 -20.91 16 11 C 0.13 4.53 4.89 85.56 0.42 4.95 16 12 C -0.12 -4.74 3.55 -19.77 -0.07 -4.81 16 13 C -0.06 -2.12 9.75 22.47 0.22 -1.90 16 14 C -0.18 -5.89 10.11 22.36 0.23 -5.66 16 15 C 0.08 3.11 11.18 84.69 0.95 4.06 16 16 N -0.52 -23.18 10.36 -195.84 -2.03 -25.21 16 17 C 0.16 6.95 7.64 84.67 0.65 7.59 16 18 C 0.33 11.89 5.11 133.32 0.68 12.57 16 19 N -0.57 -20.20 10.03 -197.45 -1.98 -22.18 16 20 C 0.29 8.38 12.29 180.94 2.22 10.60 16 21 N -0.53 -14.92 10.29 -189.03 -1.95 -16.87 16 22 C 0.17 4.54 6.03 42.06 0.25 4.79 16 23 C -0.15 -4.69 5.51 -19.70 -0.11 -4.80 16 24 C -0.06 -1.52 5.02 29.77 0.15 -1.37 16 25 C 0.06 1.22 6.22 86.28 0.54 1.76 16 26 N -0.69 -11.00 6.75 -514.93 -3.47 -14.48 16 27 C 0.07 1.08 6.44 86.46 0.56 1.64 16 28 C -0.10 -1.87 5.36 29.83 0.16 -1.71 16 29 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 30 H 0.00 0.20 6.92 -2.39 -0.02 0.18 16 31 H -0.01 -0.43 7.21 -2.39 -0.02 -0.45 16 32 H 0.09 2.75 8.01 -2.39 -0.02 2.74 16 33 H 0.04 1.61 7.88 -2.39 -0.02 1.59 16 34 H 0.15 4.00 8.06 -2.92 -0.02 3.98 16 35 H 0.16 3.78 8.06 -2.91 -0.02 3.75 16 36 H 0.16 5.07 8.06 -2.91 -0.02 5.05 16 37 H 0.12 5.47 7.94 -2.91 -0.02 5.45 16 38 H 0.22 4.67 8.06 -2.91 -0.02 4.65 16 39 H 0.07 2.56 7.37 -2.39 -0.02 2.54 16 40 H 0.09 2.34 7.98 -2.39 -0.02 2.33 16 41 H 0.04 0.85 5.29 -2.38 -0.01 0.83 16 42 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.36 3.91 8.90 -89.70 -0.80 3.11 16 44 H 0.11 1.01 8.14 -2.38 -0.02 0.99 16 45 H 0.06 1.11 7.70 -2.39 -0.02 1.09 16 46 H 0.10 1.68 5.86 -2.39 -0.01 1.67 16 47 H 0.10 1.59 8.09 -2.39 -0.02 1.57 16 Total: -1.00 -68.93 369.61 -1.69 -70.62 By element: Atomic # 1 Polarization: 22.80 SS G_CDS: 0.15 Total: 22.95 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: 7.76 Total: 14.02 kcal Atomic # 7 Polarization: -142.52 SS G_CDS: -11.48 Total: -154.00 kcal Atomic # 14 Polarization: 44.53 SS G_CDS: 1.88 Total: 46.41 kcal Total: -68.93 -1.69 -70.62 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001164004667.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.401 kcal (2) G-P(sol) polarization free energy of solvation -68.935 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 102.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.689 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.624 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds