Wall clock time and date at job start Sat Apr 11 2020 05:44:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31567 * 1 3 3 Si 1.86806 * 119.99440 * 2 1 4 4 H 1.48496 * 109.46986 * 240.27752 * 3 2 1 5 5 H 1.48499 * 109.47156 * 0.27135 * 3 2 1 6 6 H 1.48503 * 109.47219 * 120.27515 * 3 2 1 7 7 C 1.38812 * 120.00497 * 180.27635 * 2 1 3 8 8 H 1.07999 * 119.99888 * 153.06138 * 7 2 1 9 9 N 1.36896 * 119.99787 * 333.05519 * 7 2 1 10 10 C 1.46504 * 120.00234 * 323.36059 * 9 7 2 11 11 C 1.50706 * 109.47204 * 264.11356 * 10 9 7 12 12 C 1.38231 * 119.99975 * 264.47884 * 11 10 9 13 13 C 1.38236 * 120.00028 * 179.76375 * 12 11 10 14 14 C 1.38234 * 119.99725 * 0.51090 * 13 12 11 15 15 C 1.38241 * 120.00112 * 359.74068 * 14 13 12 16 16 C 1.38233 * 119.99973 * 0.02562 * 15 14 13 17 17 C 1.38804 * 120.00185 * 143.36129 * 9 7 2 18 18 C 1.39251 * 120.04401 * 4.72213 * 17 9 7 19 19 N 1.32032 * 120.07600 * 179.73234 * 18 17 9 20 20 C 1.32077 * 120.17016 * 0.56968 * 19 18 17 21 21 C 1.39235 * 120.09292 * 359.68289 * 20 19 18 22 22 N 1.38983 * 120.03677 * 180.02562 * 21 20 19 23 23 C 1.46960 * 111.00469 * 236.18178 * 22 21 20 24 24 C 1.53047 * 109.36447 * 183.19084 * 23 22 21 25 25 N 1.46954 * 109.36635 * 301.59470 * 24 23 22 26 26 C 1.46960 * 110.87614 * 59.32207 * 25 24 23 27 27 C 1.46956 * 111.00177 * 359.97438 * 22 21 20 28 28 N 1.32685 * 119.92968 * 0.02577 * 21 20 19 29 29 H 0.96990 * 120.00640 * 359.72242 * 1 2 3 30 30 H 1.08997 * 109.47024 * 24.11336 * 10 9 7 31 31 H 1.08997 * 109.47556 * 144.11599 * 10 9 7 32 32 H 1.08002 * 120.00096 * 359.97438 * 12 11 10 33 33 H 1.07999 * 120.00394 * 180.23053 * 13 12 11 34 34 H 1.08000 * 120.00026 * 179.72422 * 14 13 12 35 35 H 1.07996 * 119.99838 * 179.97438 * 15 14 13 36 36 H 1.07998 * 119.99932 * 179.97438 * 16 15 14 37 37 H 1.08009 * 119.96310 * 0.02562 * 18 17 9 38 38 H 1.08002 * 119.95196 * 179.70854 * 20 19 18 39 39 H 1.09000 * 109.48572 * 303.15830 * 23 22 21 40 40 H 1.08995 * 109.48456 * 63.21926 * 23 22 21 41 41 H 1.09002 * 109.48687 * 181.63213 * 24 23 22 42 42 H 1.08997 * 109.50992 * 61.58210 * 24 23 22 43 43 H 1.00895 * 111.00439 * 183.18826 * 25 24 23 44 44 H 1.09002 * 109.48971 * 180.70811 * 26 25 24 45 45 H 1.09002 * 109.50394 * 60.66013 * 26 25 24 46 46 H 1.09000 * 109.48842 * 296.77595 * 27 22 21 47 47 H 1.08997 * 109.48882 * 56.81681 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3157 0.0000 0.0000 3 14 2.2495 1.6179 0.0000 4 1 3.0982 1.6995 -1.2159 5 1 1.2845 2.7465 0.0066 6 1 3.1083 1.6937 1.2091 7 6 2.0098 -1.2021 -0.0058 8 1 3.0019 -1.2507 -0.4298 9 7 1.4369 -2.3259 0.5260 10 6 0.5935 -2.2235 1.7196 11 6 1.4182 -2.5239 2.9447 12 6 1.4267 -3.7999 3.4763 13 6 2.1870 -4.0767 4.5971 14 6 2.9305 -3.0749 5.1925 15 6 2.9179 -1.7976 4.6640 16 6 2.1614 -1.5220 3.5403 17 6 1.6549 -3.5625 -0.0656 18 6 2.5337 -3.6762 -1.1398 19 7 2.7456 -4.8530 -1.6996 20 6 2.1170 -5.9244 -1.2508 21 6 1.2328 -5.8179 -0.1805 22 7 0.5723 -6.9462 0.2911 23 6 -0.8841 -6.7507 0.2714 24 6 -1.5694 -7.9810 0.8708 25 7 -1.1906 -9.1736 0.1003 26 6 0.2658 -9.3690 0.1200 27 6 0.9510 -8.1388 -0.4795 28 7 1.0213 -4.6381 0.3887 29 1 -0.4850 0.8399 0.0041 30 1 0.1886 -1.2142 1.7928 31 1 -0.2254 -2.9393 1.6485 32 1 0.8420 -4.5814 3.0139 33 1 2.1966 -5.0745 5.0103 34 1 3.5210 -3.2900 6.0709 35 1 3.4984 -1.0149 5.1295 36 1 2.1512 -0.5240 3.1277 37 1 3.0462 -2.8015 -1.5124 38 1 2.2894 -6.8845 -1.7144 39 1 -1.1407 -5.8692 0.8589 40 1 -1.2186 -6.6129 -0.7567 41 1 -2.6508 -7.8505 0.8307 42 1 -1.2561 -8.1032 1.9077 43 1 -1.6700 -9.9927 0.4427 44 1 0.5224 -10.2506 -0.4674 45 1 0.6006 -9.5071 1.1481 46 1 0.6372 -8.0167 -1.5162 47 1 2.0324 -8.2691 -0.4399 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001166992382.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:45 Heat of formation + Delta-G solvation = 97.854490 kcal Electronic energy + Delta-G solvation = -29975.367366 eV Core-core repulsion = 26158.135635 eV Total energy + Delta-G solvation = -3817.231731 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.93169 -40.31350 -39.69144 -37.90045 -35.78364 -34.65945 -33.52844 -32.53962 -32.02245 -31.70865 -29.95511 -28.00340 -26.86219 -26.49454 -24.77374 -23.62824 -23.35693 -23.01231 -21.92919 -20.93021 -19.54899 -18.68035 -17.92713 -17.64927 -17.41926 -17.02271 -16.70453 -16.16952 -16.15218 -15.96570 -15.74126 -15.58651 -15.44554 -15.20698 -14.92463 -14.57180 -14.23503 -14.08469 -13.86662 -13.53591 -13.31736 -13.12148 -13.07309 -12.83948 -12.66115 -12.31193 -12.21532 -12.16151 -12.12494 -11.95872 -11.92449 -11.83657 -11.70689 -11.43788 -10.69066 -9.91307 -9.75636 -9.59410 -9.49906 -9.30989 -8.69172 -8.28508 -5.99596 0.35585 0.48861 0.56826 0.72601 1.42229 1.45357 1.52615 2.14559 2.42570 2.74472 2.79966 3.16487 3.23914 3.28427 3.80746 3.84082 3.95868 4.03066 4.06686 4.09981 4.11223 4.21107 4.27627 4.29695 4.36031 4.41220 4.49568 4.55471 4.68896 4.71311 4.72559 4.82607 4.85038 4.87332 5.00996 5.01502 5.08997 5.18979 5.23754 5.35327 5.45901 5.63000 5.64219 5.68723 5.82406 5.96022 5.97442 6.15105 6.19982 6.50455 6.51966 6.82937 7.15834 7.28983 7.75314 8.56594 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.011096 B = 0.004190 C = 0.003484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2522.826347 B = 6680.219117 C = 8034.420227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.876 5.876 2 C 0.016 3.984 3 Si 0.975 3.025 4 H -0.266 1.266 5 H -0.279 1.279 6 H -0.262 1.262 7 C -0.342 4.342 8 H 0.090 0.910 9 N -0.406 5.406 10 C 0.174 3.826 11 C -0.104 4.104 12 C -0.109 4.109 13 C -0.131 4.131 14 C -0.122 4.122 15 C -0.129 4.129 16 C -0.115 4.115 17 C 0.342 3.658 18 C -0.075 4.075 19 N -0.401 5.401 20 C -0.128 4.128 21 C 0.320 3.680 22 N -0.476 5.476 23 C 0.072 3.928 24 C 0.069 3.931 25 N -0.696 5.696 26 C 0.066 3.934 27 C 0.051 3.949 28 N -0.549 5.549 29 H 0.276 0.724 30 H 0.082 0.918 31 H 0.052 0.948 32 H 0.113 0.887 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.143 0.857 36 H 0.107 0.893 37 H 0.148 0.852 38 H 0.175 0.825 39 H 0.071 0.929 40 H 0.032 0.968 41 H 0.098 0.902 42 H 0.043 0.957 43 H 0.360 0.640 44 H 0.110 0.890 45 H 0.042 0.958 46 H 0.052 0.948 47 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.180 -12.684 7.166 14.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.510 5.510 2 C -0.190 4.190 3 Si 0.798 3.202 4 H -0.190 1.190 5 H -0.204 1.204 6 H -0.186 1.186 7 C -0.470 4.470 8 H 0.107 0.893 9 N -0.096 5.096 10 C 0.050 3.950 11 C -0.105 4.105 12 C -0.128 4.128 13 C -0.149 4.149 14 C -0.140 4.140 15 C -0.147 4.147 16 C -0.134 4.134 17 C 0.098 3.902 18 C -0.247 4.247 19 N -0.113 5.113 20 C -0.293 4.293 21 C 0.080 3.920 22 N -0.194 5.194 23 C -0.055 4.055 24 C -0.061 4.061 25 N -0.330 5.330 26 C -0.064 4.064 27 C -0.076 4.076 28 N -0.279 5.279 29 H 0.086 0.914 30 H 0.100 0.900 31 H 0.071 0.929 32 H 0.131 0.869 33 H 0.157 0.843 34 H 0.169 0.831 35 H 0.160 0.840 36 H 0.125 0.875 37 H 0.166 0.834 38 H 0.191 0.809 39 H 0.090 0.910 40 H 0.050 0.950 41 H 0.116 0.884 42 H 0.061 0.939 43 H 0.180 0.820 44 H 0.129 0.871 45 H 0.060 0.940 46 H 0.070 0.930 47 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -0.321 -12.041 7.164 14.014 hybrid contribution 0.079 1.002 -0.192 1.023 sum -0.242 -11.039 6.972 13.058 Atomic orbital electron populations 1.70191 1.07744 1.29385 1.43632 1.26112 0.95502 1.02588 0.94804 0.85263 0.78375 0.76770 0.79790 1.19023 1.20356 1.18648 1.19496 0.99636 0.85864 1.41982 0.89296 1.42425 1.44104 1.01729 1.21347 1.20100 0.91123 1.02002 0.81748 1.20422 0.99276 0.94520 0.96308 1.21195 0.99623 0.95596 0.96372 1.21377 0.97300 1.00286 0.95899 1.21431 0.99324 0.92568 1.00672 1.21382 0.99243 0.98094 0.95983 1.21135 0.97150 0.98806 0.96332 1.19639 0.92664 0.87784 0.90096 1.22547 1.05458 0.96111 1.00557 1.67859 1.18928 0.98671 1.25859 1.23274 1.06358 0.98952 1.00730 1.20503 0.93398 0.89216 0.88923 1.58640 1.07816 1.01183 1.51798 1.22123 0.83904 0.99522 0.99913 1.21934 1.00195 0.88923 0.95047 1.60476 1.07387 1.06825 1.58268 1.22026 0.87306 0.96757 1.00289 1.22518 1.01394 0.87961 0.95712 1.67442 1.29672 0.97960 1.32799 0.91398 0.89963 0.92937 0.86888 0.84325 0.83099 0.83957 0.87495 0.83441 0.80861 0.91016 0.94967 0.88373 0.93912 0.81957 0.87143 0.93977 0.92976 0.88669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -45.61 11.88 21.65 0.26 -45.35 16 2 C 0.02 0.78 4.74 84.87 0.40 1.18 16 3 Si 0.98 38.84 29.63 68.60 2.03 40.87 16 4 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 5 H -0.28 -10.86 7.11 99.48 0.71 -10.15 16 6 H -0.26 -10.06 7.11 99.48 0.71 -9.35 16 7 C -0.34 -17.46 8.55 84.04 0.72 -16.74 16 8 H 0.09 4.52 6.67 -2.91 -0.02 4.50 16 9 N -0.41 -20.44 2.62 -521.67 -1.37 -21.80 16 10 C 0.17 8.23 5.10 85.63 0.44 8.67 16 11 C -0.10 -4.34 5.43 -19.86 -0.11 -4.45 16 12 C -0.11 -4.14 9.57 22.27 0.21 -3.93 16 13 C -0.13 -4.05 10.05 22.27 0.22 -3.83 16 14 C -0.12 -3.40 10.05 22.27 0.22 -3.18 16 15 C -0.13 -4.00 10.05 22.27 0.22 -3.77 16 16 C -0.12 -4.45 9.72 22.27 0.22 -4.23 16 17 C 0.34 16.90 7.30 133.03 0.97 17.87 16 18 C -0.07 -3.64 10.45 84.91 0.89 -2.75 16 19 N -0.40 -18.01 10.48 -193.93 -2.03 -20.05 16 20 C -0.13 -5.05 9.98 84.90 0.85 -4.20 16 21 C 0.32 12.72 6.44 133.01 0.86 13.58 16 22 N -0.48 -15.03 4.79 -701.05 -3.35 -18.38 16 23 C 0.07 2.14 5.47 86.31 0.47 2.62 16 24 C 0.07 1.45 6.72 86.31 0.58 2.03 16 25 N -0.70 -12.47 6.90 -513.44 -3.54 -16.02 16 26 C 0.07 1.15 6.72 86.31 0.58 1.73 16 27 C 0.05 1.23 4.29 86.31 0.37 1.60 16 28 N -0.55 -24.86 8.11 -190.05 -1.54 -26.40 16 29 H 0.28 13.51 8.31 -92.72 -0.77 12.74 16 30 H 0.08 4.16 5.73 -2.39 -0.01 4.15 16 31 H 0.05 2.56 7.41 -2.39 -0.02 2.54 16 32 H 0.11 4.51 7.56 -2.91 -0.02 4.49 16 33 H 0.14 3.49 8.06 -2.91 -0.02 3.47 16 34 H 0.15 3.04 8.06 -2.91 -0.02 3.01 16 35 H 0.14 3.52 8.06 -2.91 -0.02 3.49 16 36 H 0.11 4.29 8.06 -2.91 -0.02 4.27 16 37 H 0.15 7.19 6.33 -2.91 -0.02 7.17 16 38 H 0.17 5.57 5.79 -2.91 -0.02 5.56 16 39 H 0.07 2.46 7.69 -2.39 -0.02 2.44 16 40 H 0.03 1.04 8.14 -2.39 -0.02 1.02 16 41 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 42 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 43 H 0.36 4.50 8.90 -89.70 -0.80 3.70 16 44 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 45 H 0.04 0.75 8.14 -2.39 -0.02 0.73 16 46 H 0.05 1.31 7.57 -2.39 -0.02 1.29 16 47 H 0.10 2.13 7.15 -2.39 -0.02 2.11 16 Total: -1.00 -62.24 378.41 -1.23 -63.47 By element: Atomic # 1 Polarization: 41.26 SS G_CDS: 0.20 Total: 41.46 kcal Atomic # 6 Polarization: -5.92 SS G_CDS: 8.11 Total: 2.20 kcal Atomic # 7 Polarization: -136.42 SS G_CDS: -11.58 Total: -148.00 kcal Atomic # 14 Polarization: 38.84 SS G_CDS: 2.03 Total: 40.87 kcal Total: -62.24 -1.23 -63.47 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001166992382.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.326 kcal (2) G-P(sol) polarization free energy of solvation -62.237 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.089 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 97.854 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds