Wall clock time and date at job start Sat Apr 11 2020 05:44:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35724 * 116.99956 * 2 1 4 4 C 1.39353 * 120.36064 * 359.96917 * 3 2 1 5 5 N 1.31295 * 120.88030 * 179.74827 * 4 3 2 6 6 C 1.32890 * 121.71955 * 0.56651 * 5 4 3 7 7 C 1.47758 * 119.68994 * 179.70940 * 6 5 4 8 8 O 1.21561 * 119.99710 * 179.72969 * 7 6 5 9 9 N 1.34774 * 119.99670 * 359.72710 * 7 6 5 10 10 C 1.46501 * 119.99941 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46828 * 35.00568 * 10 9 7 12 12 C 1.52992 * 109.47432 * 275.00459 * 10 9 7 13 13 C 1.52996 * 109.47377 * 155.00075 * 10 9 7 14 14 C 1.52997 * 109.47131 * 295.00488 * 13 10 9 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47294 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00627 * 179.97438 * 17 16 15 19 19 H 1.08012 * 119.99691 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00809 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99595 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00541 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47272 * 119.99947 * 22 20 18 25 25 H 1.48504 * 109.47033 * 240.00010 * 22 20 18 26 26 C 1.39717 * 120.62135 * 359.43453 * 6 5 4 27 27 F 1.35104 * 120.46584 * 180.29354 * 26 6 5 28 28 C 1.38688 * 119.07258 * 0.27502 * 26 6 5 29 29 H 1.09003 * 109.46908 * 60.00480 * 1 2 3 30 30 H 1.09005 * 109.47368 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47807 * 300.00721 * 1 2 3 32 32 H 1.08000 * 119.56308 * 0.02627 * 4 3 2 33 33 H 0.96999 * 120.00658 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47186 * 59.99610 * 12 10 9 35 35 H 1.08997 * 109.47659 * 179.97438 * 12 10 9 36 36 H 1.09007 * 109.47202 * 299.99880 * 12 10 9 37 37 H 1.08996 * 109.47452 * 175.00488 * 13 10 9 38 38 H 1.09001 * 109.46997 * 55.00062 * 13 10 9 39 39 H 1.09001 * 109.47502 * 60.00153 * 14 13 10 40 40 H 1.09001 * 109.47289 * 299.99950 * 14 13 10 41 41 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 43 43 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 44 44 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 45 45 H 0.97006 * 119.99755 * 359.97438 * 17 16 15 46 46 H 0.97000 * 120.00324 * 180.02562 * 21 20 18 47 47 H 1.07994 * 120.79423 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 -0.0006 5 7 1.8789 3.5580 0.0043 6 6 3.2022 3.6794 -0.0011 7 6 3.8138 5.0245 -0.0017 8 8 5.0237 5.1420 -0.0016 9 7 3.0301 6.1209 -0.0023 10 6 3.6363 7.4546 -0.0023 11 1 4.5533 7.4368 -0.5914 12 6 3.9613 7.8672 1.4347 13 6 2.6576 8.4598 -0.6126 14 6 2.4293 8.1189 -2.0865 15 6 1.4500 9.1238 -2.6967 16 6 1.2212 8.7825 -4.1705 17 7 0.2832 9.7442 -4.7546 18 6 -0.0745 9.6382 -6.0721 19 1 0.3353 8.8457 -6.6809 20 6 -0.9630 10.5498 -6.6257 21 7 -1.4621 11.5158 -5.8840 22 14 -1.4514 10.4047 -8.4229 23 1 -0.7570 9.2422 -9.0323 24 1 -2.9205 10.2124 -8.5226 25 1 -1.0645 11.6448 -9.1426 26 6 4.0208 2.5471 -0.0004 27 9 5.3658 2.6742 0.0000 28 6 3.4332 1.2908 0.0001 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 0.2150 2.3248 -0.0007 33 1 2.0646 6.0272 -0.0020 34 1 4.6586 7.1511 1.8695 35 1 4.4127 8.8593 1.4346 36 1 3.0443 7.8850 2.0238 37 1 3.0716 9.4649 -0.5321 38 1 1.7089 8.4137 -0.0779 39 1 2.0152 7.1138 -2.1672 40 1 3.3780 8.1649 -2.6213 41 1 0.5014 9.0772 -2.1619 42 1 1.8637 10.1289 -2.6161 43 1 2.1697 8.8286 -4.7056 44 1 0.8074 7.7772 -4.2507 45 1 -0.0847 10.4562 -4.2079 46 1 -2.0832 12.1527 -6.2707 47 1 4.0393 0.3970 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001171160736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:53 Heat of formation + Delta-G solvation = -85.319693 kcal Electronic energy + Delta-G solvation = -28499.096070 eV Core-core repulsion = 24210.859335 eV Total energy + Delta-G solvation = -4288.236736 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -49.37450 -41.34297 -39.96959 -38.50875 -36.91166 -35.23105 -33.36205 -32.88381 -31.76939 -30.81580 -30.06075 -28.21445 -27.40880 -25.29383 -24.24352 -23.70837 -22.29876 -21.38715 -20.72182 -20.56768 -19.14776 -18.61817 -18.08170 -16.97774 -16.81818 -16.73174 -16.41103 -16.05794 -15.53663 -15.25485 -15.08772 -14.84482 -14.64246 -14.09199 -13.94601 -13.84340 -13.69319 -13.42612 -13.23612 -13.11146 -12.89666 -12.85935 -12.68294 -12.32033 -12.16613 -11.72343 -11.42232 -11.23122 -10.97332 -10.80526 -10.66832 -10.62568 -10.37533 -10.25207 -10.10857 -10.06355 -9.93586 -9.64311 -9.29480 -9.04981 -8.83556 -6.87130 -5.73037 -3.01137 0.03685 0.39764 2.27619 2.33291 2.82526 3.25659 3.45235 3.50665 3.53187 3.56029 3.63879 3.85728 4.18790 4.35266 4.40856 4.52131 4.55887 4.67778 4.72934 4.89680 4.93295 5.04252 5.04472 5.24371 5.30943 5.45471 5.50009 5.58447 5.65948 5.74270 5.75226 5.83153 5.94407 6.00511 6.15570 6.26851 6.36042 6.37988 6.41969 6.43273 6.52091 6.94530 6.96141 6.98434 7.37058 7.73886 7.98730 8.46551 9.57204 10.16934 10.51606 11.50245 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009911 B = 0.002177 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.353442 B =12861.268442 C =14774.033115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 O -0.302 6.302 3 C 0.133 3.867 4 C 0.011 3.989 5 N -0.389 5.389 6 C 0.006 3.994 7 C 0.574 3.426 8 O -0.526 6.526 9 N -0.700 5.700 10 C 0.139 3.861 11 H 0.091 0.909 12 C -0.163 4.163 13 C -0.126 4.126 14 C -0.115 4.115 15 C -0.125 4.125 16 C 0.152 3.848 17 N -0.735 5.735 18 C -0.236 4.236 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.935 5.935 22 Si 0.907 3.093 23 H -0.280 1.280 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.156 3.844 27 F -0.097 7.097 28 C -0.162 4.162 29 H 0.066 0.934 30 H 0.109 0.891 31 H 0.065 0.935 32 H 0.175 0.825 33 H 0.410 0.590 34 H 0.058 0.942 35 H 0.068 0.932 36 H 0.057 0.943 37 H 0.081 0.919 38 H 0.069 0.931 39 H 0.061 0.939 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.016 0.984 44 H 0.016 0.984 45 H 0.383 0.617 46 H 0.254 0.746 47 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.989 -22.922 19.939 31.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.212 6.212 3 C 0.084 3.916 4 C -0.152 4.152 5 N -0.101 5.101 6 C -0.134 4.134 7 C 0.358 3.642 8 O -0.401 6.401 9 N -0.352 5.352 10 C 0.035 3.965 11 H 0.109 0.891 12 C -0.221 4.221 13 C -0.164 4.164 14 C -0.153 4.153 15 C -0.163 4.163 16 C 0.025 3.975 17 N -0.379 5.379 18 C -0.368 4.368 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.584 5.584 22 Si 0.738 3.262 23 H -0.206 1.206 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.133 3.867 27 F -0.075 7.075 28 C -0.188 4.188 29 H 0.085 0.915 30 H 0.128 0.872 31 H 0.083 0.917 32 H 0.192 0.808 33 H 0.247 0.753 34 H 0.077 0.923 35 H 0.087 0.913 36 H 0.076 0.924 37 H 0.099 0.901 38 H 0.088 0.912 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.079 0.921 43 H 0.034 0.966 44 H 0.034 0.966 45 H 0.216 0.784 46 H 0.064 0.936 47 H 0.181 0.819 Dipole moment (debyes) X Y Z Total from point charges 7.512 -22.300 19.766 30.731 hybrid contribution -0.546 -0.589 -0.869 1.183 sum 6.966 -22.889 18.897 30.488 Atomic orbital electron populations 1.23312 0.76669 1.05232 1.02378 1.86075 1.22688 1.25352 1.87129 1.20034 0.92061 0.86214 0.93301 1.23098 1.01254 0.86339 1.04488 1.67480 1.09223 1.26969 1.06400 1.21269 0.89456 0.94082 1.08572 1.17476 0.86335 0.83151 0.77217 1.90860 1.13157 1.86261 1.49839 1.45894 1.10823 1.05118 1.73337 1.21129 0.97573 0.80821 0.96931 0.89112 1.22177 1.01871 1.01864 0.96212 1.21934 0.99149 0.98723 0.96603 1.21531 0.99972 0.99636 0.94189 1.21719 0.98760 0.98773 0.97028 1.20650 0.92986 0.93102 0.90795 1.42403 1.52356 1.33386 1.09760 1.19304 1.20530 1.09931 0.86991 0.91206 1.24749 1.00325 0.98037 0.98169 1.69675 1.35457 1.18181 1.35104 0.86109 0.77943 0.77197 0.84940 1.20570 1.21885 1.21871 1.18233 0.78765 0.92765 0.96904 1.91658 1.27180 1.96410 1.92267 1.20842 0.92947 0.97805 1.07250 0.91513 0.87230 0.91688 0.80798 0.75329 0.92254 0.91345 0.92392 0.90063 0.91221 0.92043 0.91981 0.92109 0.92056 0.96577 0.96634 0.78351 0.93618 0.81910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.04 9.82 101.05 0.99 1.04 16 2 O -0.30 -1.78 10.50 -18.88 -0.20 -1.98 16 3 C 0.13 0.95 6.72 -38.86 -0.26 0.69 16 4 C 0.01 0.08 10.21 -17.37 -0.18 -0.10 16 5 N -0.39 -3.74 9.52 -9.63 -0.09 -3.83 16 6 C 0.01 0.06 6.75 -82.97 -0.56 -0.50 16 7 C 0.57 7.35 7.76 -12.37 -0.10 7.25 16 8 O -0.53 -8.23 14.97 5.31 0.08 -8.15 16 9 N -0.70 -7.60 4.52 -54.78 -0.25 -7.85 16 10 C 0.14 1.46 2.57 -67.94 -0.17 1.29 16 11 H 0.09 1.10 7.58 -51.93 -0.39 0.70 16 12 C -0.16 -1.52 9.48 37.15 0.35 -1.17 16 13 C -0.13 -1.30 4.75 -26.73 -0.13 -1.43 16 14 C -0.12 -1.49 5.10 -26.73 -0.14 -1.63 16 15 C -0.12 -2.04 5.33 -26.73 -0.14 -2.18 16 16 C 0.15 3.21 6.26 -4.05 -0.03 3.18 16 17 N -0.74 -19.46 5.60 -59.91 -0.34 -19.79 16 18 C -0.24 -6.86 9.99 -15.06 -0.15 -7.01 16 19 H 0.07 1.98 7.83 -52.48 -0.41 1.57 16 20 C -0.02 -0.51 5.50 -17.43 -0.10 -0.61 16 21 N -0.93 -28.91 13.06 55.49 0.72 -28.19 16 22 Si 0.91 22.85 29.55 -169.99 -5.02 17.83 16 23 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 24 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 C 0.16 1.64 7.31 -38.86 -0.28 1.36 16 27 F -0.10 -1.19 15.54 2.25 0.03 -1.15 16 28 C -0.16 -1.28 10.10 -39.11 -0.40 -1.67 16 29 H 0.07 0.12 7.67 -51.93 -0.40 -0.28 16 30 H 0.11 0.08 8.14 -51.93 -0.42 -0.34 16 31 H 0.06 0.08 7.67 -51.93 -0.40 -0.32 16 32 H 0.18 0.71 6.31 -52.49 -0.33 0.38 16 33 H 0.41 4.00 7.92 -40.82 -0.32 3.67 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.80 8.14 -51.93 -0.42 0.37 16 38 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.06 0.80 7.75 -51.93 -0.40 0.40 16 40 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 41 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 45 H 0.38 10.54 7.67 -40.82 -0.31 10.23 16 46 H 0.25 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 398.57 15.07 6.01 6.01 Total: -1.00 -35.24 398.57 -7.51 -42.75 By element: Atomic # 1 Polarization: 13.02 SS G_CDS: -7.18 Total: 5.84 kcal Atomic # 6 Polarization: -0.21 SS G_CDS: -1.28 Total: -1.49 kcal Atomic # 7 Polarization: -59.71 SS G_CDS: 0.05 Total: -59.66 kcal Atomic # 8 Polarization: -10.01 SS G_CDS: -0.12 Total: -10.12 kcal Atomic # 9 Polarization: -1.19 SS G_CDS: 0.03 Total: -1.15 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -5.02 Total: 17.83 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.24 -7.51 -42.75 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171160736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.571 kcal (2) G-P(sol) polarization free energy of solvation -35.236 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.807 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.320 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds