Wall clock time and date at job start Sat Apr 11 2020 05:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35724 * 116.99956 * 2 1 4 4 C 1.39353 * 120.36064 * 359.96917 * 3 2 1 5 5 N 1.31295 * 120.88030 * 179.74827 * 4 3 2 6 6 C 1.32890 * 121.71955 * 0.56651 * 5 4 3 7 7 C 1.47758 * 119.68994 * 179.70940 * 6 5 4 8 8 O 1.21561 * 119.99710 * 179.72969 * 7 6 5 9 9 N 1.34774 * 119.99670 * 359.72710 * 7 6 5 10 10 C 1.46501 * 119.99941 * 179.97438 * 9 7 6 11 11 H 1.09007 * 109.46828 * 35.00568 * 10 9 7 12 12 C 1.52992 * 109.47432 * 275.00459 * 10 9 7 13 13 C 1.52996 * 109.47377 * 155.00075 * 10 9 7 14 14 C 1.52997 * 109.47131 * 295.00488 * 13 10 9 15 15 C 1.53006 * 109.47127 * 179.97438 * 14 13 10 16 16 C 1.52997 * 109.47127 * 180.02562 * 15 14 13 17 17 N 1.46496 * 109.47294 * 179.97438 * 16 15 14 18 18 C 1.36935 * 120.00627 * 179.97438 * 17 16 15 19 19 H 1.08012 * 119.99691 * 359.97438 * 18 17 16 20 20 C 1.38805 * 120.00809 * 180.02562 * 18 17 16 21 21 N 1.31623 * 119.99595 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00541 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47144 * 359.97438 * 22 20 18 24 24 H 1.48495 * 109.47272 * 119.99947 * 22 20 18 25 25 H 1.48504 * 109.47033 * 240.00010 * 22 20 18 26 26 C 1.39717 * 120.62135 * 359.43453 * 6 5 4 27 27 F 1.35104 * 120.46584 * 180.29354 * 26 6 5 28 28 C 1.38688 * 119.07258 * 0.27502 * 26 6 5 29 29 H 1.09003 * 109.46908 * 60.00480 * 1 2 3 30 30 H 1.09005 * 109.47368 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.47807 * 300.00721 * 1 2 3 32 32 H 1.08000 * 119.56308 * 0.02627 * 4 3 2 33 33 H 0.96999 * 120.00658 * 0.02562 * 9 7 6 34 34 H 1.09002 * 109.47186 * 59.99610 * 12 10 9 35 35 H 1.08997 * 109.47659 * 179.97438 * 12 10 9 36 36 H 1.09007 * 109.47202 * 299.99880 * 12 10 9 37 37 H 1.08996 * 109.47452 * 175.00488 * 13 10 9 38 38 H 1.09001 * 109.46997 * 55.00062 * 13 10 9 39 39 H 1.09001 * 109.47502 * 60.00153 * 14 13 10 40 40 H 1.09001 * 109.47289 * 299.99950 * 14 13 10 41 41 H 1.09001 * 109.47002 * 299.99574 * 15 14 13 42 42 H 1.08993 * 109.46955 * 60.00011 * 15 14 13 43 43 H 1.09001 * 109.47289 * 299.99953 * 16 15 14 44 44 H 1.09004 * 109.47261 * 59.99697 * 16 15 14 45 45 H 0.97006 * 119.99755 * 359.97438 * 17 16 15 46 46 H 0.97000 * 120.00324 * 180.02562 * 21 20 18 47 47 H 1.07994 * 120.79423 * 179.97438 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0451 1.2093 0.0000 4 6 1.2935 2.3828 -0.0006 5 7 1.8789 3.5580 0.0043 6 6 3.2022 3.6794 -0.0011 7 6 3.8138 5.0245 -0.0017 8 8 5.0237 5.1420 -0.0016 9 7 3.0301 6.1209 -0.0023 10 6 3.6363 7.4546 -0.0023 11 1 4.5533 7.4368 -0.5914 12 6 3.9613 7.8672 1.4347 13 6 2.6576 8.4598 -0.6126 14 6 2.4293 8.1189 -2.0865 15 6 1.4500 9.1238 -2.6967 16 6 1.2212 8.7825 -4.1705 17 7 0.2832 9.7442 -4.7546 18 6 -0.0745 9.6382 -6.0721 19 1 0.3353 8.8457 -6.6809 20 6 -0.9630 10.5498 -6.6257 21 7 -1.4621 11.5158 -5.8840 22 14 -1.4514 10.4047 -8.4229 23 1 -0.7570 9.2422 -9.0323 24 1 -2.9205 10.2124 -8.5226 25 1 -1.0645 11.6448 -9.1426 26 6 4.0208 2.5471 -0.0004 27 9 5.3658 2.6742 0.0000 28 6 3.4332 1.2908 0.0001 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3635 0.5139 0.8899 32 1 0.2150 2.3248 -0.0007 33 1 2.0646 6.0272 -0.0020 34 1 4.6586 7.1511 1.8695 35 1 4.4127 8.8593 1.4346 36 1 3.0443 7.8850 2.0238 37 1 3.0716 9.4649 -0.5321 38 1 1.7089 8.4137 -0.0779 39 1 2.0152 7.1138 -2.1672 40 1 3.3780 8.1649 -2.6213 41 1 0.5014 9.0772 -2.1619 42 1 1.8637 10.1289 -2.6161 43 1 2.1697 8.8286 -4.7056 44 1 0.8074 7.7772 -4.2507 45 1 -0.0847 10.4562 -4.2079 46 1 -2.0832 12.1527 -6.2707 47 1 4.0393 0.3970 0.0002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001171160736.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:44:52 Heat of formation + Delta-G solvation = -109.727240 kcal Electronic energy + Delta-G solvation = -28500.154461 eV Core-core repulsion = 24210.859335 eV Total energy + Delta-G solvation = -4289.295126 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -50.19488 -41.97858 -40.78832 -39.10779 -38.02157 -36.84072 -34.81232 -33.69536 -32.96636 -32.09020 -31.06769 -28.82150 -28.50403 -26.12365 -25.78583 -24.47154 -23.67229 -22.42265 -22.01608 -21.55512 -19.71901 -19.36560 -19.13070 -18.75270 -17.45721 -17.39504 -17.30365 -16.69602 -16.63400 -16.33515 -16.21839 -15.92873 -15.65380 -15.40095 -15.27460 -14.89256 -14.60732 -14.41232 -14.39226 -14.14003 -13.98550 -13.90498 -13.26224 -13.03922 -12.94875 -12.89902 -12.86149 -12.53513 -12.45966 -12.28804 -12.11353 -11.89294 -11.82224 -11.53656 -11.40289 -11.38409 -10.95362 -10.86687 -10.76155 -10.18178 -9.70667 -9.01995 -7.97034 -5.26399 -0.67243 -0.23243 1.46306 1.47651 1.53212 1.57977 1.79657 2.03509 2.49143 2.54918 2.87354 2.96939 3.31656 3.36257 3.51597 3.62401 3.72796 3.99137 4.02693 4.05692 4.13906 4.34784 4.38534 4.39091 4.41623 4.42233 4.60803 4.65008 4.67797 4.77728 4.81130 4.87404 4.93147 4.99119 5.01122 5.09479 5.12946 5.26617 5.31911 5.42713 5.45660 5.52954 5.55443 5.94576 6.24944 6.26131 6.54228 7.09426 7.31638 8.07932 8.32004 9.26877 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009911 B = 0.002177 C = 0.001895 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2824.353442 B =12861.268442 C =14774.033115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.005 3.995 2 O -0.307 6.307 3 C 0.146 3.854 4 C 0.018 3.982 5 N -0.398 5.398 6 C -0.019 4.019 7 C 0.569 3.431 8 O -0.565 6.565 9 N -0.692 5.692 10 C 0.141 3.859 11 H 0.072 0.928 12 C -0.156 4.156 13 C -0.115 4.115 14 C -0.106 4.106 15 C -0.111 4.111 16 C 0.148 3.852 17 N -0.749 5.749 18 C -0.249 4.249 19 H 0.072 0.928 20 C -0.077 4.077 21 N -0.969 5.969 22 Si 0.976 3.024 23 H -0.267 1.267 24 H -0.289 1.289 25 H -0.291 1.291 26 C 0.138 3.862 27 F -0.115 7.115 28 C -0.161 4.161 29 H 0.076 0.924 30 H 0.127 0.873 31 H 0.080 0.920 32 H 0.208 0.792 33 H 0.417 0.583 34 H 0.042 0.958 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.056 0.944 41 H 0.063 0.937 42 H 0.059 0.941 43 H 0.012 0.988 44 H 0.016 0.984 45 H 0.375 0.625 46 H 0.253 0.747 47 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.579 -24.353 20.238 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 O -0.218 6.218 3 C 0.096 3.904 4 C -0.146 4.146 5 N -0.110 5.110 6 C -0.156 4.156 7 C 0.354 3.646 8 O -0.444 6.444 9 N -0.343 5.343 10 C 0.037 3.963 11 H 0.090 0.910 12 C -0.215 4.215 13 C -0.153 4.153 14 C -0.144 4.144 15 C -0.149 4.149 16 C 0.022 3.978 17 N -0.391 5.391 18 C -0.381 4.381 19 H 0.090 0.910 20 C -0.269 4.269 21 N -0.620 5.620 22 Si 0.805 3.195 23 H -0.192 1.192 24 H -0.216 1.216 25 H -0.218 1.218 26 C 0.115 3.885 27 F -0.093 7.093 28 C -0.187 4.187 29 H 0.095 0.905 30 H 0.146 0.854 31 H 0.099 0.901 32 H 0.225 0.775 33 H 0.254 0.746 34 H 0.061 0.939 35 H 0.100 0.900 36 H 0.089 0.911 37 H 0.110 0.890 38 H 0.102 0.898 39 H 0.079 0.921 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.078 0.922 43 H 0.030 0.970 44 H 0.034 0.966 45 H 0.206 0.794 46 H 0.061 0.939 47 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 6.105 -23.755 20.077 31.696 hybrid contribution -0.207 -0.294 -0.945 1.010 sum 5.898 -24.049 19.132 31.292 Atomic orbital electron populations 1.23680 0.74574 1.06956 1.03599 1.86095 1.24799 1.24484 1.86398 1.20052 0.91772 0.86849 0.91760 1.23662 1.02706 0.85576 1.02668 1.67475 1.08335 1.28212 1.06955 1.21052 0.90313 0.93374 1.10885 1.17796 0.86025 0.84182 0.76582 1.90825 1.14744 1.86939 1.51873 1.45880 1.11019 1.04930 1.72473 1.21107 0.96883 0.80750 0.97583 0.90976 1.22115 1.02139 1.02049 0.95151 1.21843 0.99839 0.99057 0.94559 1.21429 0.98626 0.98576 0.95785 1.21586 0.99789 0.99568 0.93948 1.20846 0.91461 0.91945 0.93551 1.42633 1.53189 1.34118 1.09196 1.19684 1.20308 1.09804 0.88272 0.90964 1.25616 1.00711 0.97950 1.02631 1.69824 1.36218 1.19029 1.36956 0.85038 0.77461 0.77382 0.79667 1.19178 1.21625 1.21837 1.18444 0.78117 0.93722 0.98194 1.91604 1.28472 1.96582 1.92666 1.21012 0.93779 0.97352 1.06573 0.90550 0.85448 0.90136 0.77532 0.74560 0.93888 0.89981 0.91147 0.88957 0.89772 0.92070 0.92552 0.91808 0.92175 0.96964 0.96606 0.79361 0.93861 0.80166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.01 9.82 113.37 1.11 1.12 16 2 O -0.31 -2.80 10.50 -90.47 -0.95 -3.75 16 3 C 0.15 1.78 6.72 22.73 0.15 1.94 16 4 C 0.02 0.21 10.21 85.04 0.87 1.08 16 5 N -0.40 -7.24 9.52 -184.39 -1.76 -8.99 16 6 C -0.02 -0.42 6.75 41.86 0.28 -0.14 16 7 C 0.57 15.06 7.76 86.76 0.67 15.73 16 8 O -0.56 -18.70 14.97 -3.91 -0.06 -18.76 16 9 N -0.69 -14.90 4.52 -445.50 -2.01 -16.91 16 10 C 0.14 2.88 2.57 44.99 0.12 3.00 16 11 H 0.07 1.78 7.58 -2.38 -0.02 1.76 16 12 C -0.16 -2.77 9.48 71.98 0.68 -2.09 16 13 C -0.12 -2.18 4.75 30.59 0.15 -2.04 16 14 C -0.11 -2.63 5.10 30.60 0.16 -2.48 16 15 C -0.11 -3.51 5.33 30.60 0.16 -3.35 16 16 C 0.15 6.20 6.26 86.38 0.54 6.74 16 17 N -0.75 -39.74 5.60 -343.46 -1.92 -41.67 16 18 C -0.25 -14.43 9.99 84.03 0.84 -13.59 16 19 H 0.07 4.06 7.83 -2.90 -0.02 4.04 16 20 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 21 N -0.97 -60.26 13.06 21.65 0.28 -59.97 16 22 Si 0.98 46.82 29.55 68.60 2.03 48.85 16 23 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 25 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 26 C 0.14 2.98 7.31 22.74 0.17 3.14 16 27 F -0.12 -2.99 15.54 44.97 0.70 -2.29 16 28 C -0.16 -2.42 10.10 22.57 0.23 -2.19 16 29 H 0.08 0.00 7.67 -2.39 -0.02 -0.02 16 30 H 0.13 -0.23 8.14 -2.38 -0.02 -0.25 16 31 H 0.08 -0.10 7.67 -2.39 -0.02 -0.11 16 32 H 0.21 0.96 6.31 -2.91 -0.02 0.94 16 33 H 0.42 7.75 7.92 -92.71 -0.73 7.02 16 34 H 0.04 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.07 1.07 8.14 -2.38 -0.02 1.05 16 37 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 38 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 39 H 0.06 1.53 7.75 -2.39 -0.02 1.51 16 40 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 41 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 42 H 0.06 1.92 8.14 -2.39 -0.02 1.90 16 43 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 44 H 0.02 0.67 8.14 -2.38 -0.02 0.65 16 45 H 0.37 20.81 7.67 -92.70 -0.71 20.10 16 46 H 0.25 15.06 8.31 -92.71 -0.77 14.29 16 47 H 0.18 1.92 8.06 -2.91 -0.02 1.89 16 Total: -1.00 -76.93 398.57 2.46 -74.48 By element: Atomic # 1 Polarization: 26.65 SS G_CDS: -0.45 Total: 26.20 kcal Atomic # 6 Polarization: -3.77 SS G_CDS: 6.59 Total: 2.82 kcal Atomic # 7 Polarization: -122.14 SS G_CDS: -5.41 Total: -127.55 kcal Atomic # 8 Polarization: -21.50 SS G_CDS: -1.01 Total: -22.51 kcal Atomic # 9 Polarization: -2.99 SS G_CDS: 0.70 Total: -2.29 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -76.93 2.46 -74.48 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001171160736.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.252 kcal (2) G-P(sol) polarization free energy of solvation -76.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.183 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds