Wall clock time and date at job start Sat Apr 11 2020 05:45:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34237 * 116.99955 * 2 1 4 4 O 1.20828 * 119.99593 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99899 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.01802 * 330.83497 * 5 3 2 7 7 C 1.54264 * 110.07318 * 209.41573 * 5 3 2 8 8 C 1.55037 * 104.28307 * 217.17733 * 7 5 3 9 9 H 1.08995 * 110.69481 * 279.51743 * 8 7 5 10 10 N 1.46894 * 110.87693 * 156.10176 * 8 7 5 11 11 C 1.46898 * 111.00557 * 91.68210 * 10 8 7 12 12 H 1.09005 * 109.40810 * 325.00263 * 11 10 8 13 13 C 1.52958 * 109.41347 * 84.85232 * 11 10 8 14 14 C 1.53238 * 109.39984 * 183.77511 * 13 11 10 15 15 C 1.51271 * 108.48659 * 305.27273 * 14 13 11 16 16 C 1.37871 * 120.84872 * 231.41066 * 15 14 13 17 17 N 1.31512 * 119.99908 * 179.97438 * 16 15 14 18 18 Si 1.86799 * 120.00059 * 359.97376 * 16 15 14 19 19 H 1.48500 * 109.47187 * 60.00350 * 18 16 15 20 20 H 1.48502 * 109.47028 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47372 * 300.00217 * 18 16 15 22 22 C 1.51263 * 118.29939 * 51.38650 * 15 14 13 23 23 C 1.52957 * 109.41808 * 205.14258 * 11 10 8 24 24 C 1.54890 * 102.68248 * 37.76720 * 8 7 5 25 25 C 1.53883 * 110.03106 * 92.22697 * 5 3 2 26 26 H 1.08997 * 110.06814 * 238.64090 * 25 5 3 27 27 C 1.50692 * 110.03133 * 0.04805 * 25 5 3 28 28 O 1.20826 * 120.00522 * 85.97601 * 27 25 5 29 29 O 1.34237 * 119.99957 * 265.98068 * 27 25 5 30 30 C 1.45198 * 116.99660 * 180.02562 * 29 27 25 31 31 H 1.09003 * 109.47363 * 299.99826 * 1 2 3 32 32 H 1.09003 * 109.47506 * 59.99727 * 1 2 3 33 33 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 34 34 H 1.09001 * 110.48599 * 335.76501 * 7 5 3 35 35 H 1.09001 * 110.48997 * 98.40718 * 7 5 3 36 36 H 1.00900 * 110.99645 * 215.63801 * 10 8 7 37 37 H 1.08991 * 109.48473 * 303.69214 * 13 11 10 38 38 H 1.09004 * 109.47901 * 63.72892 * 13 11 10 39 39 H 1.08996 * 109.61635 * 185.59081 * 14 13 11 40 40 H 1.09002 * 109.83752 * 65.08124 * 14 13 11 41 41 H 0.96999 * 119.99937 * 179.97438 * 17 16 15 42 42 H 1.09001 * 109.62689 * 188.93980 * 22 15 14 43 43 H 1.09004 * 109.78412 * 68.46023 * 22 15 14 44 44 H 1.08995 * 109.48087 * 296.27559 * 23 11 10 45 45 H 1.09004 * 109.48246 * 56.31246 * 23 11 10 46 46 H 1.08995 * 110.48829 * 203.48887 * 24 8 7 47 47 H 1.08996 * 110.48767 * 80.96668 * 24 8 7 48 48 H 1.09002 * 109.46637 * 179.97438 * 30 29 27 49 49 H 1.08992 * 109.47431 * 299.99088 * 30 29 27 50 50 H 1.08997 * 109.47171 * 60.00268 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9854 0.4015 0.5000 7 6 4.0286 2.5632 0.7121 8 6 5.2619 3.0291 -0.1037 9 1 6.1501 2.4681 0.1867 10 7 5.4807 4.4728 0.0568 11 6 6.3980 4.7457 1.1712 12 1 6.2336 4.0147 1.9630 13 6 7.8421 4.6442 0.6776 14 6 8.7986 4.8357 1.8594 15 6 8.4643 6.1447 2.5399 16 6 9.4448 7.0803 2.7933 17 7 9.1353 8.2130 3.3855 18 14 11.2126 6.7389 2.2957 19 1 11.2827 6.5350 0.8265 20 1 12.0658 7.8930 2.6770 21 1 11.6949 5.5172 2.9886 22 6 7.0268 6.4011 2.9346 23 6 6.1345 6.1512 1.7142 24 6 4.8528 2.6944 -1.5596 25 6 4.0902 1.3583 -1.4439 26 1 4.7635 0.5253 -1.6462 27 6 2.9369 1.3366 -2.4134 28 8 2.3735 2.3648 -2.7054 29 8 2.5352 0.1748 -2.9527 30 6 1.4184 0.2293 -3.8790 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.2444 3.3195 0.6795 35 1 4.3110 2.3493 1.7430 36 1 5.8198 4.8845 -0.7997 37 1 8.0064 3.6625 0.2335 38 1 8.0261 5.4166 -0.0692 39 1 9.8264 4.8631 1.4976 40 1 8.6814 4.0148 2.5669 41 1 9.8252 8.8711 3.5641 42 1 6.9162 7.4343 3.2635 43 1 6.7400 5.7271 3.7419 44 1 6.3598 6.8871 0.9424 45 1 5.0877 6.2382 2.0052 46 1 5.7365 2.5761 -2.1866 47 1 4.2023 3.4712 -1.9612 48 1 1.1968 -0.7749 -4.2405 49 1 0.5436 0.6338 -3.3701 50 1 1.6768 0.8698 -4.7223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173564884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:16 Heat of formation + Delta-G solvation = -185.289611 kcal Electronic energy + Delta-G solvation = -31080.024447 eV Core-core repulsion = 26878.620245 eV Total energy + Delta-G solvation = -4201.404203 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.60336 -40.20482 -38.67537 -37.20207 -36.60438 -36.23941 -33.69451 -31.55254 -29.93841 -29.64335 -29.10762 -27.84267 -27.48313 -25.75107 -23.46436 -22.11311 -21.54840 -21.19068 -20.44334 -19.86382 -19.18186 -18.47145 -17.51623 -17.25804 -17.10859 -16.18896 -16.11555 -15.89442 -15.69570 -14.96852 -14.55647 -14.31617 -13.97319 -13.82476 -13.79256 -13.19867 -13.02986 -12.95198 -12.64453 -12.38195 -12.36438 -12.31191 -12.16818 -12.04206 -11.88578 -11.45813 -11.22439 -11.15747 -11.08868 -10.99516 -10.91773 -10.86911 -10.79875 -10.67026 -10.45696 -10.35034 -10.19757 -9.79121 -9.69112 -8.84691 -8.73239 -8.45041 -7.83507 -6.06880 -3.97479 1.78878 1.94423 2.24515 2.54027 3.28638 3.35727 3.36614 3.96618 4.15001 4.31069 4.39931 4.60439 4.66982 4.75799 4.80629 4.83983 4.89278 4.91099 5.00853 5.06747 5.11074 5.17070 5.19951 5.25113 5.37235 5.47198 5.73867 5.75219 5.89841 5.92251 6.02813 6.07432 6.13189 6.21419 6.33049 6.52110 6.74214 6.80900 6.91495 6.98149 7.01492 7.23625 7.40154 7.43744 7.51881 7.60832 7.67840 7.75097 7.91295 7.94076 8.43827 9.01295 9.57552 11.02901 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.002486 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.222727 B =11260.576470 C =11769.790890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.355 6.355 3 C 0.449 3.551 4 O -0.478 6.478 5 C -0.071 4.071 6 H 0.119 0.881 7 C -0.106 4.106 8 C 0.090 3.910 9 H 0.061 0.939 10 N -0.679 5.679 11 C 0.100 3.900 12 H 0.066 0.934 13 C -0.134 4.134 14 C -0.007 4.007 15 C -0.487 4.487 16 C 0.075 3.925 17 N -0.890 5.890 18 Si 0.890 3.110 19 H -0.276 1.276 20 H -0.293 1.293 21 H -0.276 1.276 22 C 0.009 3.991 23 C -0.093 4.093 24 C -0.121 4.121 25 C -0.068 4.068 26 H 0.119 0.881 27 C 0.449 3.551 28 O -0.480 6.480 29 O -0.354 6.354 30 C 0.035 3.965 31 H 0.064 0.936 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.101 0.899 35 H 0.079 0.921 36 H 0.340 0.660 37 H 0.028 0.972 38 H 0.053 0.947 39 H 0.021 0.979 40 H 0.016 0.984 41 H 0.264 0.736 42 H 0.057 0.943 43 H 0.002 0.998 44 H 0.047 0.953 45 H 0.037 0.963 46 H 0.079 0.921 47 H 0.099 0.901 48 H 0.102 0.898 49 H 0.059 0.941 50 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.815 -19.960 -11.641 26.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.272 6.272 3 C 0.290 3.710 4 O -0.363 6.363 5 C -0.091 4.091 6 H 0.137 0.863 7 C -0.145 4.145 8 C -0.020 4.020 9 H 0.079 0.921 10 N -0.308 5.308 11 C -0.009 4.009 12 H 0.084 0.916 13 C -0.173 4.173 14 C -0.045 4.045 15 C -0.506 4.506 16 C -0.127 4.127 17 N -0.528 5.528 18 Si 0.718 3.282 19 H -0.201 1.201 20 H -0.219 1.219 21 H -0.201 1.201 22 C -0.029 4.029 23 C -0.132 4.132 24 C -0.159 4.159 25 C -0.088 4.088 26 H 0.137 0.863 27 C 0.291 3.709 28 O -0.365 6.365 29 O -0.271 6.271 30 C -0.059 4.059 31 H 0.083 0.917 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.120 0.880 35 H 0.097 0.903 36 H 0.158 0.842 37 H 0.046 0.954 38 H 0.071 0.929 39 H 0.040 0.960 40 H 0.035 0.965 41 H 0.074 0.926 42 H 0.075 0.925 43 H 0.020 0.980 44 H 0.066 0.934 45 H 0.055 0.945 46 H 0.098 0.902 47 H 0.118 0.882 48 H 0.120 0.880 49 H 0.078 0.922 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -14.768 -19.058 -11.313 26.632 hybrid contribution 1.450 -0.406 -0.871 1.740 sum -13.318 -19.464 -12.183 26.545 Atomic orbital electron populations 1.23258 0.76508 1.03600 1.02512 1.86540 1.23281 1.33236 1.84145 1.23695 0.92127 0.81716 0.73480 1.90732 1.66574 1.36041 1.42938 1.21673 0.87604 1.03813 0.96009 0.86299 1.22578 0.99515 0.93821 0.98541 1.22354 0.96310 0.90721 0.92659 0.92075 1.60722 1.51750 1.09159 1.09214 1.21551 0.88958 0.98960 0.91405 0.91596 1.22239 0.97235 0.97993 0.99865 1.19564 0.94102 0.97500 0.93338 1.20039 0.93517 0.99820 1.37267 1.24841 0.98341 0.94702 0.94851 1.69825 1.33632 1.07529 1.41777 0.86681 0.84936 0.77433 0.79104 1.20132 1.21906 1.20147 1.19386 0.92805 0.98804 0.91885 1.21574 0.97973 0.93845 0.99805 1.22711 1.00073 0.94687 0.98401 1.21584 0.93722 1.03006 0.90464 0.86264 1.23699 0.84851 0.81839 0.80551 1.90732 1.54281 1.33850 1.57679 1.86542 1.49006 1.34987 1.56529 1.23262 0.87171 1.03695 0.91740 0.91732 0.92287 0.88006 0.88037 0.90275 0.84162 0.95378 0.92850 0.96022 0.96524 0.92585 0.92485 0.97987 0.93421 0.94456 0.90216 0.88208 0.87965 0.92216 0.91793 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 10.56 101.05 1.07 1.35 16 2 O -0.36 -3.82 10.57 -39.28 -0.41 -4.23 16 3 C 0.45 5.66 5.05 36.00 0.18 5.85 16 4 O -0.48 -7.61 14.90 -21.72 -0.32 -7.93 16 5 C -0.07 -0.75 3.40 -90.65 -0.31 -1.05 16 6 H 0.12 0.91 8.14 -51.93 -0.42 0.48 16 7 C -0.11 -1.33 6.00 -24.99 -0.15 -1.48 16 8 C 0.09 1.13 2.96 -65.64 -0.19 0.94 16 9 H 0.06 0.74 7.22 -51.93 -0.37 0.37 16 10 N -0.68 -10.50 6.14 -97.63 -0.60 -11.10 16 11 C 0.10 1.84 2.24 -67.76 -0.15 1.68 16 12 H 0.07 1.23 7.86 -51.93 -0.41 0.83 16 13 C -0.13 -2.57 5.17 -26.63 -0.14 -2.71 16 14 C -0.01 -0.16 5.59 -27.48 -0.15 -0.31 16 15 C -0.49 -12.75 5.51 -98.93 -0.55 -13.30 16 16 C 0.08 2.06 5.46 -17.82 -0.10 1.96 16 17 N -0.89 -25.77 12.73 55.43 0.71 -25.07 16 18 Si 0.89 21.28 26.80 -169.99 -4.56 16.72 16 19 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 20 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.07 16 22 C 0.01 0.23 5.97 -27.49 -0.16 0.06 16 23 C -0.09 -2.00 5.54 -26.63 -0.15 -2.15 16 24 C -0.12 -1.34 5.69 -25.07 -0.14 -1.48 16 25 C -0.07 -0.68 3.40 -90.65 -0.31 -0.99 16 26 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 27 C 0.45 5.41 5.07 36.00 0.18 5.60 16 28 O -0.48 -7.31 14.91 -21.72 -0.32 -7.64 16 29 O -0.35 -3.64 10.57 -39.28 -0.41 -4.06 16 30 C 0.04 0.27 10.56 101.05 1.07 1.34 16 31 H 0.06 0.53 8.13 -51.93 -0.42 0.10 16 32 H 0.06 0.50 8.13 -51.93 -0.42 0.08 16 33 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 1.57 6.87 -51.93 -0.36 1.22 16 35 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 36 H 0.34 5.05 8.18 -39.29 -0.32 4.73 16 37 H 0.03 0.47 7.47 -51.93 -0.39 0.08 16 38 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 39 H 0.02 0.49 5.17 -51.93 -0.27 0.22 16 40 H 0.02 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.06 1.57 7.07 -51.93 -0.37 1.21 16 43 H 0.00 0.04 8.14 -51.93 -0.42 -0.38 16 44 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 45 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 46 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 47 H 0.10 1.34 6.89 -51.93 -0.36 0.98 16 48 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 49 H 0.06 0.49 8.13 -51.93 -0.42 0.07 16 50 H 0.06 0.48 8.13 -51.93 -0.42 0.06 16 LS Contribution 393.24 15.07 5.93 5.93 Total: -1.00 -32.59 393.24 -8.32 -40.91 By element: Atomic # 1 Polarization: 9.48 SS G_CDS: -8.32 Total: 1.16 kcal Atomic # 6 Polarization: -4.69 SS G_CDS: 0.00 Total: -4.70 kcal Atomic # 7 Polarization: -36.28 SS G_CDS: 0.11 Total: -36.17 kcal Atomic # 8 Polarization: -22.38 SS G_CDS: -1.48 Total: -23.86 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.56 Total: 16.72 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -32.59 -8.32 -40.91 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173564884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -144.377 kcal (2) G-P(sol) polarization free energy of solvation -32.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.967 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -185.290 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds