Wall clock time and date at job start Sat Apr 11 2020 05:45:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34237 * 116.99955 * 2 1 4 4 O 1.20828 * 119.99593 * 0.02562 * 3 2 1 5 5 C 1.50692 * 119.99899 * 179.97438 * 3 2 1 6 6 H 1.08998 * 110.01802 * 330.83497 * 5 3 2 7 7 C 1.54264 * 110.07318 * 209.41573 * 5 3 2 8 8 C 1.55037 * 104.28307 * 217.17733 * 7 5 3 9 9 H 1.08995 * 110.69481 * 279.51743 * 8 7 5 10 10 N 1.46894 * 110.87693 * 156.10176 * 8 7 5 11 11 C 1.46898 * 111.00557 * 91.68210 * 10 8 7 12 12 H 1.09005 * 109.40810 * 325.00263 * 11 10 8 13 13 C 1.52958 * 109.41347 * 84.85232 * 11 10 8 14 14 C 1.53238 * 109.39984 * 183.77511 * 13 11 10 15 15 C 1.51271 * 108.48659 * 305.27273 * 14 13 11 16 16 C 1.37871 * 120.84872 * 231.41066 * 15 14 13 17 17 N 1.31512 * 119.99908 * 179.97438 * 16 15 14 18 18 Si 1.86799 * 120.00059 * 359.97376 * 16 15 14 19 19 H 1.48500 * 109.47187 * 60.00350 * 18 16 15 20 20 H 1.48502 * 109.47028 * 180.02562 * 18 16 15 21 21 H 1.48503 * 109.47372 * 300.00217 * 18 16 15 22 22 C 1.51263 * 118.29939 * 51.38650 * 15 14 13 23 23 C 1.52957 * 109.41808 * 205.14258 * 11 10 8 24 24 C 1.54890 * 102.68248 * 37.76720 * 8 7 5 25 25 C 1.53883 * 110.03106 * 92.22697 * 5 3 2 26 26 H 1.08997 * 110.06814 * 238.64090 * 25 5 3 27 27 C 1.50692 * 110.03133 * 0.04805 * 25 5 3 28 28 O 1.20826 * 120.00522 * 85.97601 * 27 25 5 29 29 O 1.34237 * 119.99957 * 265.98068 * 27 25 5 30 30 C 1.45198 * 116.99660 * 180.02562 * 29 27 25 31 31 H 1.09003 * 109.47363 * 299.99826 * 1 2 3 32 32 H 1.09003 * 109.47506 * 59.99727 * 1 2 3 33 33 H 1.08997 * 109.47247 * 180.02562 * 1 2 3 34 34 H 1.09001 * 110.48599 * 335.76501 * 7 5 3 35 35 H 1.09001 * 110.48997 * 98.40718 * 7 5 3 36 36 H 1.00900 * 110.99645 * 215.63801 * 10 8 7 37 37 H 1.08991 * 109.48473 * 303.69214 * 13 11 10 38 38 H 1.09004 * 109.47901 * 63.72892 * 13 11 10 39 39 H 1.08996 * 109.61635 * 185.59081 * 14 13 11 40 40 H 1.09002 * 109.83752 * 65.08124 * 14 13 11 41 41 H 0.96999 * 119.99937 * 179.97438 * 17 16 15 42 42 H 1.09001 * 109.62689 * 188.93980 * 22 15 14 43 43 H 1.09004 * 109.78412 * 68.46023 * 22 15 14 44 44 H 1.08995 * 109.48087 * 296.27559 * 23 11 10 45 45 H 1.09004 * 109.48246 * 56.31246 * 23 11 10 46 46 H 1.08995 * 110.48829 * 203.48887 * 24 8 7 47 47 H 1.08996 * 110.48767 * 80.96668 * 24 8 7 48 48 H 1.09002 * 109.46637 * 179.97438 * 30 29 27 49 49 H 1.08992 * 109.47431 * 299.99088 * 30 29 27 50 50 H 1.08997 * 109.47171 * 60.00268 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9854 0.4015 0.5000 7 6 4.0286 2.5632 0.7121 8 6 5.2619 3.0291 -0.1037 9 1 6.1501 2.4681 0.1867 10 7 5.4807 4.4728 0.0568 11 6 6.3980 4.7457 1.1712 12 1 6.2336 4.0147 1.9630 13 6 7.8421 4.6442 0.6776 14 6 8.7986 4.8357 1.8594 15 6 8.4643 6.1447 2.5399 16 6 9.4448 7.0803 2.7933 17 7 9.1353 8.2130 3.3855 18 14 11.2126 6.7389 2.2957 19 1 11.2827 6.5350 0.8265 20 1 12.0658 7.8930 2.6770 21 1 11.6949 5.5172 2.9886 22 6 7.0268 6.4011 2.9346 23 6 6.1345 6.1512 1.7142 24 6 4.8528 2.6944 -1.5596 25 6 4.0902 1.3583 -1.4439 26 1 4.7635 0.5253 -1.6462 27 6 2.9369 1.3366 -2.4134 28 8 2.3735 2.3648 -2.7054 29 8 2.5352 0.1748 -2.9527 30 6 1.4184 0.2293 -3.8790 31 1 -0.3634 0.5138 0.8900 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0276 0.0005 34 1 3.2444 3.3195 0.6795 35 1 4.3110 2.3493 1.7430 36 1 5.8198 4.8845 -0.7997 37 1 8.0064 3.6625 0.2335 38 1 8.0261 5.4166 -0.0692 39 1 9.8264 4.8631 1.4976 40 1 8.6814 4.0148 2.5669 41 1 9.8252 8.8711 3.5641 42 1 6.9162 7.4343 3.2635 43 1 6.7400 5.7271 3.7419 44 1 6.3598 6.8871 0.9424 45 1 5.0877 6.2382 2.0052 46 1 5.7365 2.5761 -2.1866 47 1 4.2023 3.4712 -1.9612 48 1 1.1968 -0.7749 -4.2405 49 1 0.5436 0.6338 -3.3701 50 1 1.6768 0.8698 -4.7223 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173564884.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:15 Heat of formation + Delta-G solvation = -205.659016 kcal Electronic energy + Delta-G solvation = -31080.907731 eV Core-core repulsion = 26878.620245 eV Total energy + Delta-G solvation = -4202.287486 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.49527 -41.09625 -39.79235 -38.47227 -37.51324 -37.32343 -35.25870 -33.22564 -31.41628 -30.77633 -30.30539 -28.59099 -28.48162 -27.10061 -24.35225 -23.66765 -23.04179 -22.56080 -21.45664 -21.03448 -20.51800 -19.34742 -18.40499 -18.24292 -17.99626 -17.89018 -16.94483 -16.72341 -16.62504 -16.40998 -16.02466 -15.84708 -14.85324 -14.80382 -14.63839 -14.60216 -14.54090 -14.08073 -14.01907 -13.94976 -13.75814 -13.19622 -13.11022 -13.05973 -12.98886 -12.80011 -12.67483 -12.57398 -12.21950 -12.16367 -12.03576 -11.94267 -11.88927 -11.81163 -11.76973 -11.69998 -11.54102 -11.42615 -11.36024 -10.72934 -10.54683 -10.51743 -9.12899 -8.13514 -6.07271 0.88844 1.04280 1.40664 1.41090 1.46393 1.49709 1.77758 2.42533 3.03229 3.14955 3.31631 3.40620 3.79241 3.81936 4.07856 4.15755 4.17136 4.17745 4.22740 4.24292 4.26113 4.26657 4.34175 4.36462 4.47632 4.52730 4.60962 4.64837 4.66030 4.79926 4.91717 5.01242 5.05209 5.11057 5.12572 5.14018 5.20124 5.24324 5.27737 5.31284 5.43420 5.47608 5.64759 5.68174 5.82523 5.90163 6.34814 6.39544 6.58173 6.62520 6.65413 7.00432 7.50287 8.98000 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.023539 B = 0.002486 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1189.222727 B =11260.576470 C =11769.790890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.352 6.352 3 C 0.447 3.553 4 O -0.522 6.522 5 C -0.067 4.067 6 H 0.160 0.840 7 C -0.107 4.107 8 C 0.091 3.909 9 H 0.083 0.917 10 N -0.686 5.686 11 C 0.115 3.885 12 H 0.068 0.932 13 C -0.126 4.126 14 C -0.012 4.012 15 C -0.496 4.496 16 C 0.015 3.985 17 N -0.936 5.936 18 Si 0.946 3.054 19 H -0.264 1.264 20 H -0.299 1.299 21 H -0.265 1.265 22 C 0.006 3.994 23 C -0.085 4.085 24 C -0.115 4.115 25 C -0.065 4.065 26 H 0.163 0.837 27 C 0.448 3.552 28 O -0.522 6.522 29 O -0.351 6.351 30 C 0.028 3.972 31 H 0.059 0.941 32 H 0.050 0.950 33 H 0.139 0.861 34 H 0.064 0.936 35 H 0.086 0.914 36 H 0.344 0.656 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.024 0.976 40 H 0.026 0.974 41 H 0.261 0.739 42 H 0.018 0.982 43 H -0.001 1.001 44 H 0.031 0.969 45 H 0.038 0.962 46 H 0.106 0.894 47 H 0.069 0.931 48 H 0.138 0.862 49 H 0.049 0.951 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.876 -24.139 -13.259 30.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.268 6.268 3 C 0.290 3.710 4 O -0.410 6.410 5 C -0.087 4.087 6 H 0.177 0.823 7 C -0.145 4.145 8 C -0.019 4.019 9 H 0.101 0.899 10 N -0.317 5.317 11 C 0.005 3.995 12 H 0.087 0.913 13 C -0.165 4.165 14 C -0.050 4.050 15 C -0.515 4.515 16 C -0.182 4.182 17 N -0.577 5.577 18 Si 0.773 3.227 19 H -0.189 1.189 20 H -0.225 1.225 21 H -0.189 1.189 22 C -0.032 4.032 23 C -0.123 4.123 24 C -0.153 4.153 25 C -0.084 4.084 26 H 0.181 0.819 27 C 0.291 3.709 28 O -0.411 6.411 29 O -0.267 6.267 30 C -0.065 4.065 31 H 0.078 0.922 32 H 0.068 0.932 33 H 0.157 0.843 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.164 0.836 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.042 0.958 40 H 0.044 0.956 41 H 0.070 0.930 42 H 0.037 0.963 43 H 0.017 0.983 44 H 0.050 0.950 45 H 0.057 0.943 46 H 0.124 0.876 47 H 0.088 0.912 48 H 0.156 0.844 49 H 0.067 0.933 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.837 -23.300 -12.951 30.035 hybrid contribution 0.967 0.856 -0.355 1.339 sum -12.870 -22.445 -13.305 29.094 Atomic orbital electron populations 1.23528 0.75222 1.05842 1.01920 1.86533 1.24582 1.32152 1.83533 1.24195 0.93093 0.81527 0.72202 1.90723 1.67701 1.37537 1.45058 1.21789 0.86201 1.04146 0.96539 0.82282 1.22498 0.98510 0.94098 0.99431 1.22440 0.96925 0.88722 0.93778 0.89914 1.60546 1.50705 1.11783 1.08638 1.21224 0.89322 0.96453 0.92452 0.91330 1.22132 0.96319 0.99859 0.98191 1.19619 0.95203 0.95548 0.94600 1.20707 0.93574 1.01170 1.36088 1.25675 1.02363 0.94748 0.95419 1.69992 1.34623 1.08839 1.44224 0.85759 0.80337 0.77300 0.79352 1.18898 1.22548 1.18946 1.19348 0.94045 0.96410 0.93401 1.21395 0.97062 0.96096 0.97784 1.22625 1.00619 0.94535 0.97509 1.21744 0.93439 1.03865 0.89350 0.81897 1.24164 0.84849 0.81594 0.80301 1.90726 1.55733 1.35363 1.59233 1.86534 1.49533 1.34013 1.56636 1.23529 0.86038 1.05869 0.91070 0.92181 0.93151 0.84295 0.91771 0.89581 0.83646 0.91480 0.93780 0.95769 0.95609 0.93011 0.96309 0.98297 0.94989 0.94340 0.87583 0.91184 0.84378 0.93260 0.91969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.83 10.57 -51.48 -0.54 -7.38 16 3 C 0.45 10.72 5.05 71.23 0.36 11.08 16 4 O -0.52 -16.96 14.90 24.80 0.37 -16.59 16 5 C -0.07 -1.21 3.40 -10.82 -0.04 -1.25 16 6 H 0.16 1.61 8.14 -2.39 -0.02 1.59 16 7 C -0.11 -2.49 6.00 31.72 0.19 -2.30 16 8 C 0.09 2.01 2.96 46.26 0.14 2.15 16 9 H 0.08 1.56 7.22 -2.39 -0.02 1.54 16 10 N -0.69 -20.05 6.14 -462.79 -2.84 -22.90 16 11 C 0.11 4.01 2.24 44.89 0.10 4.11 16 12 H 0.07 2.39 7.86 -2.38 -0.02 2.37 16 13 C -0.13 -4.44 5.17 30.66 0.16 -4.28 16 14 C -0.01 -0.50 5.59 30.11 0.17 -0.33 16 15 C -0.50 -26.01 5.51 -16.17 -0.09 -26.10 16 16 C 0.02 0.85 5.46 84.65 0.46 1.31 16 17 N -0.94 -56.28 12.73 21.44 0.27 -56.00 16 18 Si 0.95 43.52 26.80 68.60 1.84 45.36 16 19 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 20 H -0.30 -13.89 7.11 99.48 0.71 -13.18 16 21 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 22 C 0.01 0.31 5.97 30.10 0.18 0.49 16 23 C -0.08 -3.68 5.54 30.66 0.17 -3.51 16 24 C -0.12 -2.21 5.69 31.67 0.18 -2.03 16 25 C -0.06 -1.06 3.40 -10.81 -0.04 -1.10 16 26 H 0.16 1.31 8.14 -2.39 -0.02 1.29 16 27 C 0.45 9.98 5.07 71.23 0.36 10.34 16 28 O -0.52 -15.92 14.91 24.80 0.37 -15.55 16 29 O -0.35 -6.34 10.57 -51.49 -0.54 -6.88 16 30 C 0.03 0.38 10.56 113.37 1.20 1.58 16 31 H 0.06 0.95 8.13 -2.39 -0.02 0.93 16 32 H 0.05 0.84 8.13 -2.39 -0.02 0.82 16 33 H 0.14 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.06 2.01 6.87 -2.39 -0.02 2.00 16 35 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 36 H 0.34 9.63 8.18 -89.69 -0.73 8.89 16 37 H 0.07 1.89 7.47 -2.39 -0.02 1.87 16 38 H 0.04 1.64 8.14 -2.38 -0.02 1.62 16 39 H 0.02 1.02 5.17 -2.39 -0.01 1.00 16 40 H 0.03 1.06 8.14 -2.39 -0.02 1.04 16 41 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 42 H 0.02 1.07 7.07 -2.39 -0.02 1.05 16 43 H 0.00 -0.07 8.14 -2.38 -0.02 -0.09 16 44 H 0.03 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.04 1.62 8.14 -2.38 -0.02 1.60 16 46 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 47 H 0.07 1.82 6.89 -2.39 -0.02 1.80 16 48 H 0.14 0.82 8.14 -2.39 -0.02 0.80 16 49 H 0.05 0.77 8.13 -2.39 -0.02 0.75 16 50 H 0.06 0.87 8.13 -2.39 -0.02 0.85 16 Total: -1.00 -75.26 393.24 3.83 -71.43 By element: Atomic # 1 Polarization: 16.52 SS G_CDS: 0.21 Total: 16.73 kcal Atomic # 6 Polarization: -12.91 SS G_CDS: 4.70 Total: -8.21 kcal Atomic # 7 Polarization: -76.33 SS G_CDS: -2.57 Total: -78.90 kcal Atomic # 8 Polarization: -46.05 SS G_CDS: -0.35 Total: -46.40 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.84 Total: 45.36 kcal Total: -75.26 3.83 -71.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173564884.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -134.227 kcal (2) G-P(sol) polarization free energy of solvation -75.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -209.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -205.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds