Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 117.00192 * 2 1 4 4 O 1.20823 * 119.99793 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99830 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.01689 * 330.39367 * 5 3 2 7 7 C 1.54266 * 110.03012 * 208.95425 * 5 3 2 8 8 C 1.54893 * 104.19732 * 217.10711 * 7 5 3 9 9 H 1.08998 * 110.75639 * 279.63055 * 8 7 5 10 10 N 1.46893 * 110.75607 * 156.44023 * 8 7 5 11 11 C 1.46902 * 110.99733 * 134.01945 * 10 8 7 12 12 C 1.50704 * 110.01715 * 294.11844 * 11 10 8 13 13 H 1.07997 * 119.99964 * 119.09981 * 12 11 10 14 14 C 1.37870 * 119.99779 * 299.10044 * 12 11 10 15 15 N 1.31511 * 120.00505 * 3.36025 * 14 12 11 16 16 Si 1.86801 * 119.99722 * 183.36193 * 14 12 11 17 17 H 1.48498 * 109.47428 * 59.99667 * 16 14 12 18 18 H 1.48495 * 109.47488 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47259 * 300.00097 * 16 14 12 20 20 C 1.54271 * 110.03403 * 172.67859 * 11 10 8 21 21 C 1.54889 * 104.19754 * 217.10617 * 20 11 10 22 22 C 1.54893 * 102.74798 * 37.94071 * 21 20 11 23 23 C 1.53879 * 110.03577 * 55.51171 * 11 10 8 24 24 C 1.54889 * 102.74806 * 37.93949 * 8 7 5 25 25 C 1.53873 * 110.03415 * 91.78818 * 5 3 2 26 26 H 1.08998 * 110.03455 * 238.56989 * 25 5 3 27 27 C 1.50707 * 110.02817 * 359.94746 * 25 5 3 28 28 O 1.20827 * 119.99554 * 88.26305 * 27 25 5 29 29 O 1.34225 * 120.00016 * 268.25608 * 27 25 5 30 30 C 1.45202 * 116.99650 * 180.02562 * 29 27 25 31 31 H 1.08996 * 109.46839 * 59.99993 * 1 2 3 32 32 H 1.09003 * 109.46823 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47009 * 299.99727 * 1 2 3 34 34 H 1.09001 * 110.48843 * 335.78405 * 7 5 3 35 35 H 1.08994 * 110.48801 * 98.42807 * 7 5 3 36 36 H 1.00895 * 111.00278 * 10.06620 * 10 8 7 37 37 H 0.96999 * 120.00353 * 180.02562 * 15 14 12 38 38 H 1.09001 * 110.48097 * 335.78405 * 20 11 10 39 39 H 1.08996 * 110.48640 * 98.42386 * 20 11 10 40 40 H 1.08999 * 110.75297 * 279.62927 * 21 20 11 41 41 H 1.08994 * 110.75391 * 156.25390 * 21 20 11 42 42 H 1.09004 * 110.48195 * 203.38122 * 22 21 20 43 43 H 1.08995 * 110.48589 * 80.74014 * 22 21 20 44 44 H 1.08996 * 110.03217 * 238.56882 * 23 11 10 45 45 H 1.09001 * 110.02406 * 359.95328 * 23 11 10 46 46 H 1.08994 * 110.48792 * 203.38067 * 24 8 7 47 47 H 1.09004 * 110.48388 * 80.73307 * 24 8 7 48 48 H 1.09000 * 109.46890 * 180.02562 * 30 29 27 49 49 H 1.09002 * 109.47575 * 300.00328 * 30 29 27 50 50 H 1.09002 * 109.47433 * 60.00578 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9853 0.4052 0.5069 7 6 4.0275 2.5690 0.7021 8 6 5.2608 3.0258 -0.1159 9 1 6.1485 2.4660 0.1783 10 7 5.4830 4.4695 0.0396 11 6 6.8999 4.7593 0.2971 12 6 7.3084 4.1911 1.6318 13 1 8.0862 3.4438 1.6853 14 6 6.6891 4.6253 2.7845 15 7 5.6972 5.4859 2.7140 16 14 7.2589 3.9911 4.4466 17 1 8.6860 4.3478 4.6499 18 1 6.4376 4.6070 5.5196 19 1 7.1066 2.5146 4.4918 20 6 7.1403 6.2830 0.2745 21 6 8.5307 6.4384 -0.3902 22 6 8.5119 5.3405 -1.4827 23 6 7.7721 4.1601 -0.8201 24 6 4.8526 2.6827 -1.5701 25 6 4.0910 1.3471 -1.4441 26 1 4.7652 0.5130 -1.6388 27 6 2.9381 1.3155 -2.4141 28 8 2.4000 2.3450 -2.7466 29 8 2.5090 0.1438 -2.9088 30 6 1.3945 0.1892 -3.8384 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.2427 3.3244 0.6632 35 1 4.3095 2.3635 1.7347 36 1 4.8980 4.8489 0.7689 37 1 5.2617 5.7917 3.5250 38 1 6.3751 6.7811 -0.3209 39 1 7.1556 6.6819 1.2887 40 1 9.3265 6.2521 0.3309 41 1 8.6367 7.4267 -0.8375 42 1 9.5282 5.0517 -1.7507 43 1 7.9682 5.6864 -2.3618 44 1 8.4913 3.4590 -0.3968 45 1 7.1440 3.6536 -1.5528 46 1 5.7367 2.5602 -2.1957 47 1 4.2010 3.4565 -1.9761 48 1 1.1486 -0.8226 -4.1605 49 1 0.5293 0.6341 -3.3470 50 1 1.6688 0.7903 -4.7054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001173570224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = -176.386515 kcal Electronic energy + Delta-G solvation = -32327.143712 eV Core-core repulsion = 28126.125577 eV Total energy + Delta-G solvation = -4201.018135 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.22949 -39.89498 -38.35171 -37.10355 -36.29653 -35.89776 -33.01177 -31.79551 -29.45842 -28.83252 -27.64220 -27.40355 -27.20731 -25.55015 -23.83864 -22.93185 -21.45285 -20.23334 -19.44138 -19.26684 -18.44339 -17.94528 -17.20159 -16.82342 -16.80637 -16.27098 -15.82502 -15.53890 -15.36073 -14.81683 -14.38812 -14.13168 -13.80649 -13.50749 -13.45275 -13.07899 -12.93240 -12.86263 -12.33513 -12.22869 -12.11306 -11.94246 -11.75344 -11.46956 -11.32651 -11.00972 -10.86379 -10.76717 -10.70713 -10.65029 -10.58649 -10.55212 -10.40654 -10.23042 -10.13240 -10.05897 -9.78893 -9.61039 -9.42964 -9.26976 -9.16162 -8.44820 -6.97617 -6.00058 -4.17591 2.12965 2.29149 2.57899 2.86704 3.24231 3.31423 3.33822 4.35525 4.49452 4.67991 4.78726 4.95724 4.98082 5.02702 5.05667 5.10969 5.15868 5.30395 5.42293 5.45297 5.52773 5.57236 5.66533 5.82906 5.87198 5.88020 5.94392 6.19835 6.31712 6.35067 6.37149 6.47138 6.54714 6.59345 6.62239 6.75878 6.80327 6.85652 6.95449 7.04232 7.08756 7.21537 7.42680 7.57838 7.76233 7.78294 7.84046 7.89176 8.26434 8.73067 8.93076 9.19078 9.54145 10.94282 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.004100 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.628528 B = 6827.128301 C = 8237.989752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.356 6.356 3 C 0.450 3.550 4 O -0.482 6.482 5 C -0.069 4.069 6 H 0.114 0.886 7 C -0.120 4.120 8 C 0.109 3.891 9 H 0.072 0.928 10 N -0.674 5.674 11 C 0.233 3.767 12 C -0.531 4.531 13 H 0.052 0.948 14 C 0.071 3.929 15 N -0.886 5.886 16 Si 0.884 3.116 17 H -0.278 1.278 18 H -0.288 1.288 19 H -0.278 1.278 20 C -0.092 4.092 21 C -0.121 4.121 22 C -0.118 4.118 23 C -0.115 4.115 24 C -0.110 4.110 25 C -0.071 4.071 26 H 0.114 0.886 27 C 0.450 3.550 28 O -0.482 6.482 29 O -0.356 6.356 30 C 0.035 3.965 31 H 0.057 0.943 32 H 0.099 0.901 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.078 0.922 36 H 0.364 0.636 37 H 0.264 0.736 38 H 0.041 0.959 39 H 0.073 0.927 40 H 0.057 0.943 41 H 0.042 0.958 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.049 0.951 45 H 0.054 0.946 46 H 0.072 0.928 47 H 0.092 0.908 48 H 0.099 0.901 49 H 0.057 0.943 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.969 -11.598 -8.299 15.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.273 6.273 3 C 0.291 3.709 4 O -0.367 6.367 5 C -0.089 4.089 6 H 0.133 0.867 7 C -0.159 4.159 8 C -0.002 4.002 9 H 0.090 0.910 10 N -0.308 5.308 11 C 0.144 3.856 12 C -0.571 4.571 13 H 0.070 0.930 14 C -0.132 4.132 15 N -0.524 5.524 16 Si 0.712 3.288 17 H -0.204 1.204 18 H -0.214 1.214 19 H -0.204 1.204 20 C -0.130 4.130 21 C -0.159 4.159 22 C -0.156 4.156 23 C -0.153 4.153 24 C -0.148 4.148 25 C -0.091 4.091 26 H 0.132 0.868 27 C 0.291 3.709 28 O -0.367 6.367 29 O -0.273 6.273 30 C -0.059 4.059 31 H 0.076 0.924 32 H 0.118 0.882 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.096 0.904 36 H 0.189 0.811 37 H 0.075 0.925 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.076 0.924 41 H 0.061 0.939 42 H 0.062 0.938 43 H 0.070 0.930 44 H 0.067 0.933 45 H 0.072 0.928 46 H 0.091 0.909 47 H 0.111 0.889 48 H 0.118 0.882 49 H 0.076 0.924 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -6.509 -10.730 -8.962 15.421 hybrid contribution -0.104 -0.689 1.839 1.966 sum -6.613 -11.418 -7.123 14.995 Atomic orbital electron populations 1.23213 0.76996 1.03325 1.02346 1.86555 1.22925 1.33545 1.84268 1.23894 0.92357 0.81519 0.73134 1.90706 1.66654 1.36076 1.43232 1.21699 0.86799 1.03993 0.96429 0.86744 1.22876 1.00062 0.93512 0.99413 1.22044 0.95058 0.92902 0.90221 0.90970 1.61056 1.09513 1.08153 1.52109 1.19106 0.84545 0.91528 0.90449 1.21804 1.20308 1.23083 0.91870 0.92985 1.24941 0.94855 0.94644 0.98711 1.69676 1.22384 1.31694 1.28693 0.86798 0.78892 0.79045 0.84098 1.20359 1.21382 1.20415 1.22186 0.92927 0.97834 1.00071 1.22426 0.99748 0.96397 0.97292 1.22260 0.98370 0.97176 0.97789 1.22389 0.98124 0.96752 0.98029 1.22775 0.98969 0.92577 1.00473 1.21741 0.93299 1.04077 0.89945 0.86814 1.23894 0.84692 0.81657 0.80633 1.90705 1.55532 1.34149 1.56310 1.86556 1.48659 1.34704 1.57364 1.23214 0.87444 1.03381 0.91839 0.92414 0.88230 0.91922 0.89200 0.90352 0.81101 0.92533 0.94031 0.90835 0.92419 0.93938 0.93834 0.92988 0.93257 0.92753 0.90950 0.88929 0.88232 0.92410 0.91932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.38 10.56 101.05 1.07 1.44 16 2 O -0.36 -4.97 10.57 -39.26 -0.41 -5.38 16 3 C 0.45 7.38 5.04 36.00 0.18 7.56 16 4 O -0.48 -9.41 15.03 -20.41 -0.31 -9.72 16 5 C -0.07 -1.05 3.40 -90.66 -0.31 -1.36 16 6 H 0.11 1.43 8.14 -51.93 -0.42 1.00 16 7 C -0.12 -2.21 5.60 -25.07 -0.14 -2.35 16 8 C 0.11 2.08 2.19 -65.72 -0.14 1.94 16 9 H 0.07 1.43 6.54 -51.93 -0.34 1.09 16 10 N -0.67 -14.86 6.03 -91.02 -0.55 -15.41 16 11 C 0.23 5.23 0.48 -131.63 -0.06 5.17 16 12 C -0.53 -13.03 7.02 -34.44 -0.24 -13.27 16 13 H 0.05 1.30 7.33 -52.49 -0.38 0.92 16 14 C 0.07 1.77 4.94 -17.82 -0.09 1.68 16 15 N -0.89 -22.76 10.13 55.43 0.56 -22.20 16 16 Si 0.88 20.01 29.54 -169.99 -5.02 14.98 16 17 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.86 16 20 C -0.09 -2.08 5.62 -25.07 -0.14 -2.22 16 21 C -0.12 -2.36 6.91 -24.74 -0.17 -2.53 16 22 C -0.12 -2.15 6.83 -25.07 -0.17 -2.32 16 23 C -0.11 -2.28 5.32 -25.61 -0.14 -2.42 16 24 C -0.11 -1.84 5.52 -25.07 -0.14 -1.98 16 25 C -0.07 -1.03 3.40 -90.65 -0.31 -1.34 16 26 H 0.11 1.31 8.14 -51.93 -0.42 0.88 16 27 C 0.45 7.08 5.05 36.01 0.18 7.26 16 28 O -0.48 -9.07 15.04 -20.41 -0.31 -9.38 16 29 O -0.36 -4.76 10.57 -39.25 -0.41 -5.18 16 30 C 0.04 0.36 10.56 101.05 1.07 1.43 16 31 H 0.06 0.64 8.13 -51.93 -0.42 0.22 16 32 H 0.10 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.67 8.13 -51.93 -0.42 0.25 16 34 H 0.09 1.87 6.74 -51.93 -0.35 1.52 16 35 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 36 H 0.36 8.91 6.06 -39.29 -0.24 8.67 16 37 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 38 H 0.04 0.95 8.05 -51.93 -0.42 0.54 16 39 H 0.07 1.85 6.46 -51.93 -0.34 1.52 16 40 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 41 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 44 H 0.05 0.99 7.37 -51.93 -0.38 0.60 16 45 H 0.05 1.02 5.19 -51.93 -0.27 0.75 16 46 H 0.07 1.11 6.77 -51.93 -0.35 0.76 16 47 H 0.09 1.80 6.87 -51.93 -0.36 1.44 16 48 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 49 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 50 H 0.06 0.63 8.13 -51.93 -0.42 0.20 16 LS Contribution 388.14 15.07 5.85 5.85 Total: -1.00 -29.21 388.14 -8.21 -37.43 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.06 Total: 12.31 kcal Atomic # 6 Polarization: -3.75 SS G_CDS: 0.44 Total: -3.30 kcal Atomic # 7 Polarization: -37.62 SS G_CDS: 0.01 Total: -37.61 kcal Atomic # 8 Polarization: -28.22 SS G_CDS: -1.44 Total: -29.66 kcal Atomic # 14 Polarization: 20.01 SS G_CDS: -5.02 Total: 14.98 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -29.21 -8.21 -37.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173570224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -138.960 kcal (2) G-P(sol) polarization free energy of solvation -29.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.214 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.427 kcal (6) G-S(sol) free energy of system = (1) + (5) -176.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds