Wall clock time and date at job start Sat Apr 11 2020 05:45:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34229 * 117.00192 * 2 1 4 4 O 1.20823 * 119.99793 * 0.02562 * 3 2 1 5 5 C 1.50698 * 119.99830 * 179.97438 * 3 2 1 6 6 H 1.08997 * 110.01689 * 330.39367 * 5 3 2 7 7 C 1.54266 * 110.03012 * 208.95425 * 5 3 2 8 8 C 1.54893 * 104.19732 * 217.10711 * 7 5 3 9 9 H 1.08998 * 110.75639 * 279.63055 * 8 7 5 10 10 N 1.46893 * 110.75607 * 156.44023 * 8 7 5 11 11 C 1.46902 * 110.99733 * 134.01945 * 10 8 7 12 12 C 1.50704 * 110.01715 * 294.11844 * 11 10 8 13 13 H 1.07997 * 119.99964 * 119.09981 * 12 11 10 14 14 C 1.37870 * 119.99779 * 299.10044 * 12 11 10 15 15 N 1.31511 * 120.00505 * 3.36025 * 14 12 11 16 16 Si 1.86801 * 119.99722 * 183.36193 * 14 12 11 17 17 H 1.48498 * 109.47428 * 59.99667 * 16 14 12 18 18 H 1.48495 * 109.47488 * 179.97438 * 16 14 12 19 19 H 1.48503 * 109.47259 * 300.00097 * 16 14 12 20 20 C 1.54271 * 110.03403 * 172.67859 * 11 10 8 21 21 C 1.54889 * 104.19754 * 217.10617 * 20 11 10 22 22 C 1.54893 * 102.74798 * 37.94071 * 21 20 11 23 23 C 1.53879 * 110.03577 * 55.51171 * 11 10 8 24 24 C 1.54889 * 102.74806 * 37.93949 * 8 7 5 25 25 C 1.53873 * 110.03415 * 91.78818 * 5 3 2 26 26 H 1.08998 * 110.03455 * 238.56989 * 25 5 3 27 27 C 1.50707 * 110.02817 * 359.94746 * 25 5 3 28 28 O 1.20827 * 119.99554 * 88.26305 * 27 25 5 29 29 O 1.34225 * 120.00016 * 268.25608 * 27 25 5 30 30 C 1.45202 * 116.99650 * 180.02562 * 29 27 25 31 31 H 1.08996 * 109.46839 * 59.99993 * 1 2 3 32 32 H 1.09003 * 109.46823 * 179.97438 * 1 2 3 33 33 H 1.08993 * 109.47009 * 299.99727 * 1 2 3 34 34 H 1.09001 * 110.48843 * 335.78405 * 7 5 3 35 35 H 1.08994 * 110.48801 * 98.42807 * 7 5 3 36 36 H 1.00895 * 111.00278 * 10.06620 * 10 8 7 37 37 H 0.96999 * 120.00353 * 180.02562 * 15 14 12 38 38 H 1.09001 * 110.48097 * 335.78405 * 20 11 10 39 39 H 1.08996 * 110.48640 * 98.42386 * 20 11 10 40 40 H 1.08999 * 110.75297 * 279.62927 * 21 20 11 41 41 H 1.08994 * 110.75391 * 156.25390 * 21 20 11 42 42 H 1.09004 * 110.48195 * 203.38122 * 22 21 20 43 43 H 1.08995 * 110.48589 * 80.74014 * 22 21 20 44 44 H 1.08996 * 110.03217 * 238.56882 * 23 11 10 45 45 H 1.09001 * 110.02406 * 359.95328 * 23 11 10 46 46 H 1.08994 * 110.48792 * 203.38067 * 24 8 7 47 47 H 1.09004 * 110.48388 * 80.73307 * 24 8 7 48 48 H 1.09000 * 109.46890 * 180.02562 * 30 29 27 49 49 H 1.09002 * 109.47575 * 300.00328 * 30 29 27 50 50 H 1.09002 * 109.47433 * 60.00578 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 0.0005 5 6 3.5664 1.2747 0.0006 6 1 3.9853 0.4052 0.5069 7 6 4.0275 2.5690 0.7021 8 6 5.2608 3.0258 -0.1159 9 1 6.1485 2.4660 0.1783 10 7 5.4830 4.4695 0.0396 11 6 6.8999 4.7593 0.2971 12 6 7.3084 4.1911 1.6318 13 1 8.0862 3.4438 1.6853 14 6 6.6891 4.6253 2.7845 15 7 5.6972 5.4859 2.7140 16 14 7.2589 3.9911 4.4466 17 1 8.6860 4.3478 4.6499 18 1 6.4376 4.6070 5.5196 19 1 7.1066 2.5146 4.4918 20 6 7.1403 6.2830 0.2745 21 6 8.5307 6.4384 -0.3902 22 6 8.5119 5.3405 -1.4827 23 6 7.7721 4.1601 -0.8201 24 6 4.8526 2.6827 -1.5701 25 6 4.0910 1.3471 -1.4441 26 1 4.7652 0.5130 -1.6388 27 6 2.9381 1.3155 -2.4141 28 8 2.4000 2.3450 -2.7466 29 8 2.5090 0.1438 -2.9088 30 6 1.3945 0.1892 -3.8384 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 3.2427 3.3244 0.6632 35 1 4.3095 2.3635 1.7347 36 1 4.8980 4.8489 0.7689 37 1 5.2617 5.7917 3.5250 38 1 6.3751 6.7811 -0.3209 39 1 7.1556 6.6819 1.2887 40 1 9.3265 6.2521 0.3309 41 1 8.6367 7.4267 -0.8375 42 1 9.5282 5.0517 -1.7507 43 1 7.9682 5.6864 -2.3618 44 1 8.4913 3.4590 -0.3968 45 1 7.1440 3.6536 -1.5528 46 1 5.7367 2.5602 -2.1957 47 1 4.2010 3.4565 -1.9761 48 1 1.1486 -0.8226 -4.1605 49 1 0.5293 0.6341 -3.3470 50 1 1.6688 0.7903 -4.7054 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173570224.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:22 Heat of formation + Delta-G solvation = -192.711436 kcal Electronic energy + Delta-G solvation = -32327.851614 eV Core-core repulsion = 28126.125577 eV Total energy + Delta-G solvation = -4201.726037 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.46947 -41.08973 -39.86249 -38.46785 -37.50026 -37.23174 -34.71820 -33.48639 -30.73294 -30.20790 -29.14434 -28.52980 -28.46085 -27.13555 -25.54767 -24.18991 -22.68183 -21.74104 -20.84415 -20.64935 -20.07561 -19.23313 -18.39810 -18.19383 -18.02648 -17.85623 -16.92459 -16.80107 -16.68647 -16.63036 -15.88519 -15.60812 -15.17781 -14.65115 -14.60520 -14.55729 -14.45072 -14.06623 -13.97878 -13.53041 -13.28565 -13.12490 -13.04873 -13.02997 -12.84993 -12.65885 -12.40549 -12.31827 -12.14797 -12.01359 -11.93070 -11.88695 -11.79647 -11.70248 -11.61142 -11.44518 -11.33813 -11.18390 -11.08554 -11.00578 -10.90414 -10.34891 -8.74887 -7.89009 -6.14315 0.89264 1.05933 1.41415 1.45844 1.47616 1.49756 1.78892 2.46674 3.19631 3.26716 3.42859 3.65411 3.85590 4.09108 4.16676 4.20389 4.22879 4.24796 4.27141 4.28266 4.29627 4.32119 4.38026 4.43093 4.47672 4.59166 4.66153 4.71931 4.81074 4.94737 5.03432 5.07795 5.12307 5.15219 5.18371 5.24623 5.26989 5.29955 5.40258 5.49691 5.53459 5.58744 5.76915 5.77816 5.82843 6.04650 6.39068 6.58941 6.65890 6.89039 7.14910 7.31151 7.60483 8.99434 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.013295 B = 0.004100 C = 0.003398 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2105.628528 B = 6827.128301 C = 8237.989752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.451 3.549 4 O -0.523 6.523 5 C -0.066 4.066 6 H 0.152 0.848 7 C -0.115 4.115 8 C 0.109 3.891 9 H 0.070 0.930 10 N -0.682 5.682 11 C 0.225 3.775 12 C -0.533 4.533 13 H 0.046 0.954 14 C 0.035 3.965 15 N -0.904 5.904 16 Si 0.931 3.069 17 H -0.279 1.279 18 H -0.294 1.294 19 H -0.272 1.272 20 C -0.093 4.093 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.112 4.112 24 C -0.100 4.100 25 C -0.067 4.067 26 H 0.158 0.842 27 C 0.452 3.548 28 O -0.521 6.521 29 O -0.350 6.350 30 C 0.027 3.973 31 H 0.051 0.949 32 H 0.142 0.858 33 H 0.058 0.942 34 H 0.056 0.944 35 H 0.067 0.933 36 H 0.346 0.654 37 H 0.259 0.741 38 H 0.028 0.972 39 H 0.040 0.960 40 H 0.052 0.948 41 H 0.061 0.939 42 H 0.069 0.931 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.064 0.936 46 H 0.091 0.909 47 H 0.061 0.939 48 H 0.140 0.860 49 H 0.048 0.952 50 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.107 -14.536 -9.611 18.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.294 3.706 4 O -0.411 6.411 5 C -0.086 4.086 6 H 0.170 0.830 7 C -0.153 4.153 8 C -0.002 4.002 9 H 0.088 0.912 10 N -0.314 5.314 11 C 0.135 3.865 12 C -0.573 4.573 13 H 0.065 0.935 14 C -0.165 4.165 15 N -0.544 5.544 16 Si 0.758 3.242 17 H -0.205 1.205 18 H -0.221 1.221 19 H -0.197 1.197 20 C -0.131 4.131 21 C -0.154 4.154 22 C -0.149 4.149 23 C -0.150 4.150 24 C -0.138 4.138 25 C -0.086 4.086 26 H 0.176 0.824 27 C 0.295 3.705 28 O -0.410 6.410 29 O -0.266 6.266 30 C -0.066 4.066 31 H 0.070 0.930 32 H 0.160 0.840 33 H 0.077 0.923 34 H 0.075 0.925 35 H 0.086 0.914 36 H 0.168 0.832 37 H 0.068 0.932 38 H 0.046 0.954 39 H 0.059 0.941 40 H 0.071 0.929 41 H 0.080 0.920 42 H 0.088 0.912 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.109 0.891 47 H 0.080 0.920 48 H 0.158 0.842 49 H 0.067 0.933 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.633 -13.725 -10.292 18.057 hybrid contribution -0.480 0.200 2.237 2.297 sum -6.113 -13.525 -8.054 16.887 Atomic orbital electron populations 1.23555 0.75132 1.05942 1.01949 1.86536 1.24696 1.31866 1.83523 1.24089 0.92797 0.81615 0.72077 1.90699 1.67589 1.37576 1.45236 1.21715 0.86477 1.03435 0.96927 0.83018 1.22660 0.98895 0.94551 0.99229 1.22077 0.95053 0.91125 0.91923 0.91186 1.61112 1.08971 1.10231 1.51117 1.19211 0.85203 0.91345 0.90733 1.22021 1.19682 1.22610 0.93010 0.93541 1.25443 0.95041 0.94990 1.01059 1.69808 1.23203 1.32696 1.28669 0.86049 0.78075 0.78793 0.81245 1.20501 1.22054 1.19703 1.22114 0.94759 0.98057 0.98207 1.22381 0.97232 0.98216 0.97549 1.22233 0.99767 0.95630 0.97238 1.22321 0.97860 0.97390 0.97388 1.22573 0.99323 0.93156 0.98748 1.21792 0.93514 1.04186 0.89132 0.82399 1.24053 0.84458 0.81686 0.80279 1.90701 1.56801 1.35652 1.57803 1.86538 1.49393 1.33143 1.57570 1.23549 0.86065 1.05927 0.91028 0.92983 0.84030 0.92305 0.92539 0.91431 0.83165 0.93181 0.95353 0.94149 0.92915 0.92040 0.91238 0.92099 0.93356 0.91710 0.89060 0.91981 0.84182 0.93302 0.91905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.54 10.56 113.37 1.20 1.74 16 2 O -0.35 -9.05 10.57 -51.41 -0.54 -9.59 16 3 C 0.45 14.51 5.04 71.24 0.36 14.87 16 4 O -0.52 -21.00 15.03 23.56 0.35 -20.65 16 5 C -0.07 -1.91 3.40 -10.82 -0.04 -1.95 16 6 H 0.15 3.27 8.14 -2.39 -0.02 3.25 16 7 C -0.11 -4.30 5.60 31.67 0.18 -4.12 16 8 C 0.11 4.16 2.19 46.21 0.10 4.26 16 9 H 0.07 2.70 6.54 -2.39 -0.02 2.69 16 10 N -0.68 -30.91 6.03 -441.87 -2.67 -33.57 16 11 C 0.22 10.17 0.48 3.51 0.00 10.17 16 12 C -0.53 -26.38 7.02 25.60 0.18 -26.20 16 13 H 0.05 2.31 7.33 -2.91 -0.02 2.29 16 14 C 0.03 1.78 4.94 84.65 0.42 2.19 16 15 N -0.90 -48.28 10.13 21.44 0.22 -48.06 16 16 Si 0.93 41.47 29.54 68.60 2.03 43.50 16 17 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 18 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 19 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 20 C -0.09 -4.29 5.62 31.67 0.18 -4.12 16 21 C -0.12 -4.40 6.91 31.89 0.22 -4.18 16 22 C -0.11 -3.77 6.83 31.67 0.22 -3.56 16 23 C -0.11 -4.26 5.32 31.32 0.17 -4.10 16 24 C -0.10 -3.26 5.52 31.67 0.17 -3.08 16 25 C -0.07 -1.80 3.40 -10.81 -0.04 -1.84 16 26 H 0.16 2.90 8.14 -2.39 -0.02 2.88 16 27 C 0.45 13.58 5.05 71.24 0.36 13.94 16 28 O -0.52 -19.75 15.04 23.55 0.35 -19.40 16 29 O -0.35 -8.44 10.57 -51.37 -0.54 -8.98 16 30 C 0.03 0.50 10.56 113.37 1.20 1.69 16 31 H 0.05 1.10 8.13 -2.39 -0.02 1.08 16 32 H 0.14 1.57 8.14 -2.39 -0.02 1.55 16 33 H 0.06 1.21 8.13 -2.39 -0.02 1.19 16 34 H 0.06 2.50 6.74 -2.39 -0.02 2.48 16 35 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.35 17.83 6.06 -89.70 -0.54 17.29 16 37 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 38 H 0.03 1.34 8.05 -2.39 -0.02 1.32 16 39 H 0.04 2.10 6.46 -2.39 -0.02 2.09 16 40 H 0.05 2.04 8.14 -2.39 -0.02 2.02 16 41 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.07 2.03 8.14 -2.38 -0.02 2.01 16 43 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 44 H 0.05 1.84 7.37 -2.39 -0.02 1.82 16 45 H 0.06 2.31 5.19 -2.39 -0.01 2.30 16 46 H 0.09 2.60 6.77 -2.39 -0.02 2.59 16 47 H 0.06 2.45 6.87 -2.38 -0.02 2.43 16 48 H 0.14 1.38 8.14 -2.39 -0.02 1.36 16 49 H 0.05 0.98 8.13 -2.39 -0.02 0.97 16 50 H 0.06 1.15 8.13 -2.39 -0.02 1.13 16 Total: -1.00 -66.68 388.14 4.48 -62.21 By element: Atomic # 1 Polarization: 38.42 SS G_CDS: 0.40 Total: 38.83 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.87 Total: -4.27 kcal Atomic # 7 Polarization: -79.19 SS G_CDS: -2.45 Total: -81.64 kcal Atomic # 8 Polarization: -58.24 SS G_CDS: -0.38 Total: -58.62 kcal Atomic # 14 Polarization: 41.47 SS G_CDS: 2.03 Total: 43.50 kcal Total: -66.68 4.48 -62.21 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173570224.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.504 kcal (2) G-P(sol) polarization free energy of solvation -66.683 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.207 kcal (6) G-S(sol) free energy of system = (1) + (5) -192.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds