Wall clock time and date at job start Sat Apr 11 2020 05:45:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34230 * 117.00432 * 2 1 4 4 O 1.20827 * 119.99314 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00133 * 180.02562 * 3 2 1 6 6 H 1.08999 * 110.01673 * 331.17757 * 5 3 2 7 7 C 1.54259 * 110.03049 * 209.73300 * 5 3 2 8 8 C 1.54888 * 104.19686 * 217.10395 * 7 5 3 9 9 H 1.08997 * 110.91809 * 279.55770 * 8 7 5 10 10 N 1.46901 * 110.75374 * 156.25866 * 8 7 5 11 11 C 1.46848 * 111.00126 * 190.88460 * 10 8 7 12 12 C 1.53033 * 109.52609 * 174.16098 * 11 10 8 13 13 C 1.53123 * 109.27969 * 59.17946 * 12 11 10 14 14 C 1.50694 * 109.52285 * 182.44084 * 13 12 11 15 15 H 1.07994 * 120.00308 * 119.68394 * 14 13 12 16 16 C 1.37879 * 119.99877 * 299.67893 * 14 13 12 17 17 N 1.31510 * 120.00296 * 0.02562 * 16 14 13 18 18 Si 1.86804 * 120.00042 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.46784 * 90.00078 * 18 16 14 20 20 H 1.48498 * 109.47360 * 210.00249 * 18 16 14 21 21 H 1.48501 * 109.47070 * 330.00618 * 18 16 14 22 22 C 1.53114 * 109.15685 * 302.34893 * 13 12 11 23 23 C 1.46842 * 111.00245 * 66.67451 * 10 8 7 24 24 C 1.54888 * 102.74551 * 37.94647 * 8 7 5 25 25 C 1.53876 * 110.03150 * 92.57082 * 5 3 2 26 26 H 1.08998 * 110.02902 * 238.56809 * 25 5 3 27 27 C 1.50704 * 110.03381 * 359.94915 * 25 5 3 28 28 O 1.20817 * 119.99989 * 87.47391 * 27 25 5 29 29 O 1.34236 * 119.99774 * 267.47464 * 27 25 5 30 30 C 1.45195 * 116.99661 * 179.97438 * 29 27 25 31 31 H 1.09001 * 109.47333 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47129 * 59.99668 * 1 2 3 33 33 H 1.09006 * 109.46904 * 299.99859 * 1 2 3 34 34 H 1.09006 * 110.49153 * 335.78427 * 7 5 3 35 35 H 1.09006 * 110.48561 * 98.42655 * 7 5 3 36 36 H 1.09003 * 109.46004 * 294.18010 * 11 10 8 37 37 H 1.09003 * 109.46386 * 54.14103 * 11 10 8 38 38 H 1.09000 * 109.50382 * 299.23519 * 12 11 10 39 39 H 1.09008 * 109.53345 * 179.14119 * 12 11 10 40 40 H 1.09005 * 109.51959 * 62.25027 * 13 12 11 41 41 H 0.97000 * 120.00025 * 179.97438 * 17 16 14 42 42 H 1.09007 * 109.49880 * 297.70768 * 22 13 12 43 43 H 1.09005 * 109.50249 * 177.59731 * 22 13 12 44 44 H 1.09003 * 109.46264 * 305.85722 * 23 10 8 45 45 H 1.09006 * 109.46217 * 65.83060 * 23 10 8 46 46 H 1.09003 * 110.48252 * 203.37730 * 24 8 7 47 47 H 1.09004 * 110.48565 * 80.73817 * 24 8 7 48 48 H 1.09000 * 109.47564 * 300.00432 * 30 29 27 49 49 H 1.09005 * 109.47171 * 60.00216 * 30 29 27 50 50 H 1.09000 * 109.47276 * 180.02562 * 30 29 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2747 -0.0006 6 1 3.9861 0.3981 0.4928 7 6 4.0286 2.5590 0.7183 8 6 5.2607 3.0272 -0.0951 9 1 6.1507 2.4657 0.1888 10 7 5.4805 4.4695 0.0768 11 6 6.4757 4.9680 -0.8810 12 6 6.5721 6.4914 -0.7720 13 6 6.9751 6.8717 0.6554 14 6 7.0134 8.3725 0.7850 15 1 6.3702 8.8698 1.4959 16 6 7.8696 9.1110 -0.0040 17 7 8.6526 8.5056 -0.8701 18 14 7.9177 10.9714 0.1571 19 1 8.9265 11.3540 1.1775 20 1 8.2838 11.5723 -1.1506 21 1 6.5809 11.4670 0.5727 22 6 5.9484 6.2993 1.6367 23 6 5.8700 4.7815 1.4578 24 6 4.8502 2.7045 -1.5534 25 6 4.0888 1.3674 -1.4450 26 1 4.7627 0.5361 -1.6523 27 6 2.9344 1.3494 -2.4136 28 8 2.3867 2.3819 -2.7198 29 8 2.5148 0.1864 -2.9362 30 6 1.3976 0.2446 -3.8617 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3633 0.5138 0.8901 34 1 3.2437 3.3150 0.6911 35 1 4.3121 2.3390 1.7476 36 1 7.4469 4.5258 -0.6590 37 1 6.1751 4.6946 -1.8925 38 1 5.6047 6.9351 -1.0075 39 1 7.3217 6.8602 -1.4723 40 1 7.9599 6.4606 0.8776 41 1 9.2547 9.0252 -1.4254 42 1 4.9712 6.7400 1.4391 43 1 6.2527 6.5303 2.6576 44 1 5.1295 4.3725 2.1453 45 1 6.8442 4.3403 1.6690 46 1 5.7334 2.5908 -2.1820 47 1 4.1981 3.4841 -1.9475 48 1 0.5296 0.6693 -3.3574 49 1 1.6642 0.8694 -4.7142 50 1 1.1600 -0.7612 -4.2082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173580580.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:29 Heat of formation + Delta-G solvation = -193.075445 kcal Electronic energy + Delta-G solvation = -31422.652262 eV Core-core repulsion = 27220.910440 eV Total energy + Delta-G solvation = -4201.741822 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.52022 -41.09362 -40.21934 -38.42725 -37.51196 -37.25998 -35.31289 -33.10772 -31.71391 -30.57501 -30.18960 -28.52757 -28.27733 -26.96130 -24.60817 -23.84731 -23.22887 -22.57027 -21.20348 -20.57068 -20.35564 -19.30720 -18.46431 -18.39557 -18.13934 -18.00537 -16.93637 -16.86218 -16.69925 -16.54403 -16.34226 -15.48002 -14.94401 -14.84004 -14.67108 -14.62694 -14.57364 -14.24639 -14.12894 -14.05206 -13.55539 -13.26495 -13.09548 -13.05844 -12.91896 -12.85398 -12.71134 -12.53415 -12.27689 -12.11379 -12.04881 -11.97919 -11.91236 -11.81871 -11.80128 -11.76723 -11.64019 -11.36024 -11.29441 -10.74514 -10.60147 -10.34930 -9.08093 -8.07057 -6.19561 0.89576 1.05022 1.39690 1.41072 1.45995 1.51097 1.77672 2.44064 2.92536 3.19539 3.28205 3.29819 3.73643 3.81724 4.10328 4.12241 4.15573 4.16840 4.24256 4.24862 4.25828 4.26924 4.35778 4.37923 4.41512 4.43132 4.55161 4.61382 4.62845 4.66561 4.81640 4.89220 4.95822 4.97670 5.01775 5.13491 5.16282 5.22410 5.25516 5.29853 5.37493 5.37907 5.59925 5.65655 6.04358 6.06319 6.35508 6.43530 6.45063 6.59223 6.64642 6.91820 7.47599 8.97311 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.020865 B = 0.002617 C = 0.002507 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1341.630955 B =10695.987029 C =11165.601928 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.350 6.350 3 C 0.447 3.553 4 O -0.523 6.523 5 C -0.065 4.065 6 H 0.167 0.833 7 C -0.105 4.105 8 C 0.085 3.915 9 H 0.081 0.919 10 N -0.542 5.542 11 C 0.071 3.929 12 C -0.097 4.097 13 C 0.046 3.954 14 C -0.534 4.534 15 H 0.047 0.953 16 C 0.013 3.987 17 N -0.916 5.916 18 Si 0.950 3.050 19 H -0.274 1.274 20 H -0.283 1.283 21 H -0.273 1.273 22 C -0.102 4.102 23 C 0.069 3.931 24 C -0.110 4.110 25 C -0.065 4.065 26 H 0.165 0.835 27 C 0.447 3.553 28 O -0.524 6.524 29 O -0.350 6.350 30 C 0.028 3.972 31 H 0.139 0.861 32 H 0.047 0.953 33 H 0.061 0.939 34 H 0.065 0.935 35 H 0.103 0.897 36 H 0.025 0.975 37 H 0.070 0.930 38 H 0.020 0.980 39 H 0.061 0.939 40 H -0.006 1.006 41 H 0.260 0.740 42 H 0.041 0.959 43 H 0.054 0.946 44 H 0.086 0.914 45 H 0.032 0.968 46 H 0.095 0.905 47 H 0.063 0.937 48 H 0.049 0.951 49 H 0.059 0.941 50 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.786 -26.505 -0.925 29.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.266 6.266 3 C 0.290 3.710 4 O -0.411 6.411 5 C -0.084 4.084 6 H 0.185 0.815 7 C -0.143 4.143 8 C -0.023 4.023 9 H 0.098 0.902 10 N -0.267 5.267 11 C -0.056 4.056 12 C -0.135 4.135 13 C 0.028 3.972 14 C -0.572 4.572 15 H 0.065 0.935 16 C -0.186 4.186 17 N -0.555 5.555 18 Si 0.776 3.224 19 H -0.199 1.199 20 H -0.209 1.209 21 H -0.198 1.198 22 C -0.139 4.139 23 C -0.059 4.059 24 C -0.148 4.148 25 C -0.084 4.084 26 H 0.183 0.817 27 C 0.290 3.710 28 O -0.412 6.412 29 O -0.266 6.266 30 C -0.065 4.065 31 H 0.158 0.842 32 H 0.066 0.934 33 H 0.079 0.921 34 H 0.084 0.916 35 H 0.122 0.878 36 H 0.044 0.956 37 H 0.088 0.912 38 H 0.039 0.961 39 H 0.080 0.920 40 H 0.012 0.988 41 H 0.069 0.931 42 H 0.060 0.940 43 H 0.072 0.928 44 H 0.105 0.895 45 H 0.050 0.950 46 H 0.114 0.886 47 H 0.082 0.918 48 H 0.067 0.933 49 H 0.078 0.922 50 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -12.535 -25.640 -1.273 28.569 hybrid contribution 0.254 1.550 -0.246 1.589 sum -12.282 -24.090 -1.519 27.083 Atomic orbital electron populations 1.23528 0.75242 1.05841 1.01893 1.86527 1.24533 1.32047 1.83497 1.24175 0.93059 0.81535 0.72205 1.90738 1.67726 1.37605 1.45061 1.21785 0.86253 1.04223 0.96123 0.81547 1.22468 0.97708 0.94398 0.99698 1.22564 0.97401 0.87829 0.94469 0.90172 1.61916 1.46377 1.13841 1.04544 1.22002 0.92196 0.95838 0.95573 1.21426 0.98702 0.92982 1.00398 1.18640 0.92690 0.93733 0.92179 1.21600 1.21404 0.93648 1.20537 0.93500 1.25708 0.95241 1.02555 0.95065 1.70000 1.24889 1.36531 1.24127 0.85677 0.78337 0.80929 0.77432 1.19947 1.20865 1.19765 1.21551 0.98926 0.94715 0.98751 1.22026 0.98772 0.95827 0.89256 1.22508 1.00163 0.94432 0.97708 1.21770 0.93376 1.03451 0.89808 0.81716 1.24186 0.84792 0.81651 0.80387 1.90737 1.56517 1.35256 1.58674 1.86528 1.49303 1.33686 1.57057 1.23530 0.86024 1.05879 0.91079 0.84250 0.93365 0.92056 0.91617 0.87848 0.95647 0.91161 0.96121 0.92047 0.98771 0.93103 0.94007 0.92763 0.89537 0.94952 0.88601 0.91806 0.93257 0.92206 0.84195 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.41 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.63 10.56 -51.42 -0.54 -7.17 16 3 C 0.45 10.62 5.05 71.24 0.36 10.98 16 4 O -0.52 -17.13 14.95 24.34 0.36 -16.77 16 5 C -0.06 -1.14 3.40 -10.82 -0.04 -1.18 16 6 H 0.17 1.40 8.14 -2.39 -0.02 1.38 16 7 C -0.10 -2.33 4.96 31.67 0.16 -2.17 16 8 C 0.09 2.09 2.59 46.21 0.12 2.21 16 9 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 10 N -0.54 -18.48 4.55 -863.60 -3.93 -22.40 16 11 C 0.07 2.76 5.25 86.32 0.45 3.21 16 12 C -0.10 -4.79 5.12 30.65 0.16 -4.63 16 13 C 0.05 2.38 2.16 -11.46 -0.02 2.36 16 14 C -0.53 -30.64 8.56 25.60 0.22 -30.42 16 15 H 0.05 2.68 7.74 -2.91 -0.02 2.65 16 16 C 0.01 0.72 5.31 84.66 0.45 1.17 16 17 N -0.92 -53.93 11.37 21.45 0.24 -53.68 16 18 Si 0.95 45.13 29.54 68.60 2.03 47.16 16 19 H -0.27 -12.57 7.11 99.48 0.71 -11.87 16 20 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 21 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 22 C -0.10 -4.35 5.32 30.64 0.16 -4.19 16 23 C 0.07 2.32 5.35 86.33 0.46 2.79 16 24 C -0.11 -2.65 4.43 31.67 0.14 -2.51 16 25 C -0.06 -1.19 3.40 -10.82 -0.04 -1.23 16 26 H 0.17 1.56 8.14 -2.39 -0.02 1.54 16 27 C 0.45 10.99 5.05 71.24 0.36 11.35 16 28 O -0.52 -17.67 14.96 24.37 0.36 -17.30 16 29 O -0.35 -6.87 10.57 -51.48 -0.54 -7.41 16 30 C 0.03 0.43 10.56 113.37 1.20 1.63 16 31 H 0.14 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 0.82 8.13 -2.39 -0.02 0.80 16 33 H 0.06 0.93 8.13 -2.38 -0.02 0.91 16 34 H 0.07 2.02 6.87 -2.38 -0.02 2.01 16 35 H 0.10 1.75 7.84 -2.38 -0.02 1.73 16 36 H 0.03 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.07 2.52 6.63 -2.39 -0.02 2.50 16 38 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 39 H 0.06 3.40 6.17 -2.38 -0.01 3.38 16 40 H -0.01 -0.33 8.14 -2.38 -0.02 -0.35 16 41 H 0.26 14.55 8.31 -92.71 -0.77 13.78 16 42 H 0.04 1.89 8.14 -2.38 -0.02 1.87 16 43 H 0.05 2.22 8.14 -2.38 -0.02 2.20 16 44 H 0.09 2.47 7.00 -2.39 -0.02 2.45 16 45 H 0.03 1.06 8.14 -2.38 -0.02 1.04 16 46 H 0.10 1.95 7.85 -2.39 -0.02 1.93 16 47 H 0.06 2.10 6.87 -2.38 -0.02 2.08 16 48 H 0.05 0.86 8.13 -2.39 -0.02 0.84 16 49 H 0.06 0.97 8.13 -2.38 -0.02 0.95 16 50 H 0.14 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -78.07 392.29 4.24 -73.83 By element: Atomic # 1 Polarization: 11.86 SS G_CDS: 0.92 Total: 12.78 kcal Atomic # 6 Polarization: -14.36 SS G_CDS: 5.34 Total: -9.03 kcal Atomic # 7 Polarization: -72.40 SS G_CDS: -3.68 Total: -76.09 kcal Atomic # 8 Polarization: -48.29 SS G_CDS: -0.36 Total: -48.65 kcal Atomic # 14 Polarization: 45.13 SS G_CDS: 2.03 Total: 47.16 kcal Total: -78.07 4.24 -73.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173580580.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -119.243 kcal (2) G-P(sol) polarization free energy of solvation -78.070 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds