Wall clock time and date at job start Sat Apr 11 2020 05:45:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34230 * 116.99705 * 2 1 4 4 O 1.20827 * 119.99903 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00100 * 180.02562 * 3 2 1 6 6 H 1.09005 * 110.01424 * 333.20843 * 5 3 2 7 7 C 1.54263 * 110.03098 * 211.82059 * 5 3 2 8 8 C 1.54892 * 104.19441 * 217.10175 * 7 5 3 9 9 H 1.09001 * 110.75395 * 279.44489 * 8 7 5 10 10 N 1.46900 * 110.75379 * 156.25968 * 8 7 5 11 11 C 1.46840 * 111.00378 * 62.29026 * 10 8 7 12 12 C 1.53037 * 109.51755 * 185.84471 * 11 10 8 13 13 C 1.53123 * 109.27686 * 300.80126 * 12 11 10 14 14 C 1.53127 * 109.14828 * 57.66965 * 13 12 11 15 15 H 1.08996 * 109.53576 * 62.30250 * 14 13 12 16 16 C 1.50698 * 109.49944 * 182.39829 * 14 13 12 17 17 H 1.07998 * 120.00223 * 119.80774 * 16 14 13 18 18 C 1.37881 * 120.00169 * 299.80483 * 16 14 13 19 19 N 1.31513 * 120.00052 * 359.97438 * 18 16 14 20 20 Si 1.86803 * 120.00191 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.46939 * 359.97438 * 20 18 16 22 22 H 1.48493 * 109.47073 * 119.99481 * 20 18 16 23 23 H 1.48496 * 109.46867 * 239.99993 * 20 18 16 24 24 C 1.46851 * 110.99784 * 186.50177 * 10 8 7 25 25 C 1.54888 * 102.91385 * 37.85159 * 8 7 5 26 26 C 1.53873 * 110.03338 * 94.65115 * 5 3 2 27 27 H 1.09000 * 110.03020 * 238.56918 * 26 5 3 28 28 C 1.50692 * 110.03289 * 359.95330 * 26 5 3 29 29 O 1.20832 * 120.00147 * 91.42696 * 28 26 5 30 30 O 1.34226 * 120.00252 * 271.42176 * 28 26 5 31 31 C 1.45199 * 117.00299 * 180.02562 * 30 28 26 32 32 H 1.09005 * 109.46983 * 300.00221 * 1 2 3 33 33 H 1.08993 * 109.47345 * 60.00364 * 1 2 3 34 34 H 1.09001 * 109.46710 * 180.02562 * 1 2 3 35 35 H 1.09001 * 110.49008 * 98.42698 * 7 5 3 36 36 H 1.09000 * 110.48831 * 335.78046 * 7 5 3 37 37 H 1.09001 * 109.45985 * 305.85315 * 11 10 8 38 38 H 1.08998 * 109.46653 * 65.83022 * 11 10 8 39 39 H 1.09001 * 109.50344 * 60.75350 * 12 11 10 40 40 H 1.08998 * 109.50729 * 180.87254 * 12 11 10 41 41 H 1.08997 * 109.53430 * 297.76402 * 13 12 11 42 42 H 1.09000 * 109.57383 * 177.59433 * 13 12 11 43 43 H 0.96992 * 120.00421 * 179.97438 * 19 18 16 44 44 H 1.09004 * 109.46019 * 294.17281 * 24 10 8 45 45 H 1.09001 * 109.46332 * 54.15204 * 24 10 8 46 46 H 1.08995 * 110.48758 * 80.82801 * 25 8 7 47 47 H 1.09002 * 110.48326 * 203.47332 * 25 8 7 48 48 H 1.08997 * 109.47192 * 59.99786 * 31 30 28 49 49 H 1.09001 * 109.47092 * 179.97438 * 31 30 28 50 50 H 1.09000 * 109.46998 * 300.00010 * 31 30 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 1 3.9869 0.3814 0.4607 7 6 4.0297 2.5323 0.7637 8 6 5.2603 3.0299 -0.0346 9 1 6.1497 2.4582 0.2306 10 7 5.4805 4.4650 0.1893 11 6 5.7709 4.7388 1.6024 12 6 5.8499 6.2509 1.8245 13 6 6.9511 6.8355 0.9356 14 6 6.6501 6.4948 -0.5267 15 1 5.7069 6.9549 -0.8214 16 6 7.7596 7.0157 -1.4033 17 1 8.3347 6.3320 -2.0101 18 6 8.0406 8.3653 -1.4308 19 7 7.3401 9.1980 -0.6923 20 14 9.4155 9.0112 -2.5180 21 1 10.0457 7.8793 -3.2439 22 1 8.8592 9.9792 -3.4969 23 1 10.4350 9.6882 -1.6769 24 6 6.5476 4.9757 -0.6807 25 6 4.8520 2.7598 -1.5041 26 6 4.0860 1.4200 -1.4416 27 1 4.7595 0.5969 -1.6802 28 6 2.9298 1.4371 -2.4080 29 8 2.4276 2.4877 -2.7306 30 8 2.4580 0.2854 -2.9106 31 6 1.3431 0.3778 -3.8362 32 1 -0.3633 0.5139 0.8900 33 1 -0.3634 0.5137 -0.8899 34 1 -0.3633 -1.0277 0.0005 35 1 4.3153 2.2752 1.7837 36 1 3.2448 3.2887 0.7654 37 1 4.9783 4.3214 2.2235 38 1 6.7228 4.2817 1.8728 39 1 4.8939 6.7069 1.5673 40 1 6.0808 6.4536 2.8703 41 1 7.9131 6.4083 1.2185 42 1 6.9831 7.9181 1.0581 43 1 7.5380 10.1474 -0.7113 44 1 7.4958 4.5174 -0.3997 45 1 6.3191 4.7306 -1.7179 46 1 4.2009 3.5531 -1.8710 47 1 5.7362 2.6683 -2.1349 48 1 1.6360 0.9757 -4.6992 49 1 1.0611 -0.6221 -4.1662 50 1 0.4957 0.8490 -3.3384 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001173584135.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:36 Heat of formation + Delta-G solvation = -193.406700 kcal Electronic energy + Delta-G solvation = -31581.907394 eV Core-core repulsion = 27380.151208 eV Total energy + Delta-G solvation = -4201.756186 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 339.192 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.51320 -41.09463 -40.21164 -38.41055 -37.51626 -37.24178 -35.21758 -33.28055 -31.84053 -30.66167 -30.02689 -28.56120 -27.98706 -26.87681 -24.63421 -24.35780 -22.89588 -22.57107 -21.22317 -20.56651 -20.36790 -19.32042 -18.46617 -18.39550 -18.02229 -18.01524 -16.93318 -16.81603 -16.69252 -16.57548 -16.33605 -15.44488 -14.98908 -14.84580 -14.70588 -14.63671 -14.58164 -14.20006 -14.08165 -14.04593 -13.65972 -13.21410 -13.10809 -13.05485 -12.88162 -12.75133 -12.73411 -12.69076 -12.47340 -12.11510 -11.97659 -11.90605 -11.81291 -11.80289 -11.78832 -11.70459 -11.63163 -11.36187 -11.31556 -10.78615 -10.60355 -10.35775 -9.03083 -8.06371 -6.20636 0.89742 1.04911 1.40289 1.41749 1.45725 1.53235 1.77705 2.43419 2.95734 3.20613 3.28238 3.32082 3.74404 3.81849 4.10973 4.13064 4.15362 4.16864 4.23849 4.25208 4.26495 4.27266 4.31685 4.35733 4.42161 4.44482 4.55238 4.61122 4.66578 4.67011 4.80607 4.89690 4.94494 4.97273 5.03298 5.13765 5.16740 5.22005 5.23782 5.30427 5.36462 5.43428 5.56660 5.65805 6.00251 6.17515 6.25297 6.47874 6.49641 6.59392 6.64663 6.93599 7.47318 8.98549 Molecular weight = 339.19amu Principal moments of inertia in cm(-1) A = 0.017384 B = 0.002936 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1610.329498 B = 9533.137446 C =10488.670979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.348 6.348 3 C 0.448 3.552 4 O -0.525 6.525 5 C -0.064 4.064 6 H 0.169 0.831 7 C -0.104 4.104 8 C 0.087 3.913 9 H 0.081 0.919 10 N -0.549 5.549 11 C 0.068 3.932 12 C -0.113 4.113 13 C -0.103 4.103 14 C 0.051 3.949 15 H -0.014 1.014 16 C -0.532 4.532 17 H 0.054 0.946 18 C 0.010 3.990 19 N -0.918 5.918 20 Si 0.955 3.045 21 H -0.264 1.264 22 H -0.284 1.284 23 H -0.279 1.279 24 C 0.085 3.915 25 C -0.110 4.110 26 C -0.064 4.064 27 H 0.166 0.834 28 C 0.446 3.554 29 O -0.524 6.524 30 O -0.350 6.350 31 C 0.028 3.972 32 H 0.061 0.939 33 H 0.047 0.953 34 H 0.140 0.860 35 H 0.108 0.892 36 H 0.064 0.936 37 H 0.088 0.912 38 H 0.038 0.962 39 H 0.040 0.960 40 H 0.070 0.930 41 H 0.028 0.972 42 H 0.053 0.947 43 H 0.259 0.741 44 H 0.025 0.975 45 H 0.055 0.945 46 H 0.059 0.941 47 H 0.090 0.910 48 H 0.059 0.941 49 H 0.141 0.859 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.535 -26.420 2.348 28.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.264 6.264 3 C 0.292 3.708 4 O -0.414 6.414 5 C -0.083 4.083 6 H 0.186 0.814 7 C -0.142 4.142 8 C -0.022 4.022 9 H 0.098 0.902 10 N -0.274 5.274 11 C -0.059 4.059 12 C -0.151 4.151 13 C -0.141 4.141 14 C 0.032 3.968 15 H 0.004 0.996 16 C -0.571 4.571 17 H 0.072 0.928 18 C -0.188 4.188 19 N -0.557 5.557 20 Si 0.780 3.220 21 H -0.188 1.188 22 H -0.210 1.210 23 H -0.205 1.205 24 C -0.043 4.043 25 C -0.148 4.148 26 C -0.084 4.084 27 H 0.183 0.817 28 C 0.289 3.711 29 O -0.412 6.412 30 O -0.266 6.266 31 C -0.065 4.065 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.158 0.842 35 H 0.126 0.874 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.056 0.944 39 H 0.059 0.941 40 H 0.089 0.911 41 H 0.047 0.953 42 H 0.072 0.928 43 H 0.068 0.932 44 H 0.043 0.957 45 H 0.074 0.926 46 H 0.078 0.922 47 H 0.109 0.891 48 H 0.077 0.923 49 H 0.159 0.841 50 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -10.409 -25.411 2.141 27.544 hybrid contribution 0.605 1.207 -0.794 1.566 sum -9.804 -24.204 1.347 26.149 Atomic orbital electron populations 1.23531 0.75246 1.05854 1.01883 1.86528 1.24520 1.31944 1.83411 1.24160 0.93018 0.81545 0.72114 1.90744 1.67752 1.37654 1.45210 1.21781 0.86320 1.04493 0.95752 0.81371 1.22488 0.97600 0.94588 0.99536 1.22546 0.97433 0.88036 0.94136 0.90180 1.61905 1.44847 1.14570 1.06047 1.22015 0.99758 0.95700 0.88441 1.21596 0.98616 0.95775 0.99075 1.21443 0.95566 1.00918 0.96163 1.18593 0.94224 0.90801 0.93196 0.99573 1.21574 1.17434 0.92843 1.25221 0.92762 1.25763 0.98719 0.97366 0.96949 1.70064 1.41504 1.03085 1.41096 0.85556 0.79295 0.78347 0.78755 1.18831 1.21035 1.20516 1.21934 0.90585 0.96192 0.95551 1.22507 0.99913 0.94558 0.97847 1.21799 0.93230 1.03238 0.90111 0.81689 1.24197 0.84592 0.81868 0.80425 1.90738 1.58650 1.33821 1.58031 1.86524 1.48710 1.33793 1.57531 1.23531 0.86056 1.05847 0.91079 0.92055 0.93377 0.84224 0.87405 0.91729 0.89397 0.94384 0.94114 0.91126 0.95308 0.92846 0.93214 0.95724 0.92638 0.92207 0.89134 0.92262 0.84085 0.93309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.56 113.37 1.20 1.61 16 2 O -0.35 -6.70 10.57 -51.42 -0.54 -7.24 16 3 C 0.45 10.89 5.07 71.24 0.36 11.25 16 4 O -0.53 -17.54 15.06 23.44 0.35 -17.18 16 5 C -0.06 -1.18 3.40 -10.82 -0.04 -1.22 16 6 H 0.17 1.47 8.14 -2.38 -0.02 1.45 16 7 C -0.10 -2.36 4.77 31.67 0.15 -2.21 16 8 C 0.09 2.25 2.58 46.21 0.12 2.37 16 9 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 10 N -0.55 -19.60 4.55 -863.60 -3.93 -23.53 16 11 C 0.07 2.22 5.32 86.33 0.46 2.68 16 12 C -0.11 -4.45 6.09 30.65 0.19 -4.26 16 13 C -0.10 -5.03 5.03 30.68 0.15 -4.87 16 14 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 15 H -0.01 -0.86 8.14 -2.39 -0.02 -0.87 16 16 C -0.53 -30.14 8.56 25.60 0.22 -29.92 16 17 H 0.05 2.98 7.74 -2.91 -0.02 2.96 16 18 C 0.01 0.59 5.30 84.66 0.45 1.04 16 19 N -0.92 -55.12 11.36 21.45 0.24 -54.88 16 20 Si 0.95 44.70 29.54 68.60 2.03 46.73 16 21 H -0.26 -11.84 7.11 99.48 0.71 -11.14 16 22 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 23 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 24 C 0.08 3.58 4.52 86.32 0.39 3.97 16 25 C -0.11 -2.98 4.67 31.74 0.15 -2.83 16 26 C -0.06 -1.30 3.40 -10.75 -0.04 -1.34 16 27 H 0.17 1.83 8.14 -2.39 -0.02 1.81 16 28 C 0.45 11.82 5.01 71.23 0.36 12.18 16 29 O -0.52 -18.90 15.04 23.43 0.35 -18.55 16 30 O -0.35 -7.37 10.55 -51.37 -0.54 -7.91 16 31 C 0.03 0.47 10.56 113.37 1.20 1.66 16 32 H 0.06 0.94 8.13 -2.38 -0.02 0.93 16 33 H 0.05 0.83 8.13 -2.39 -0.02 0.81 16 34 H 0.14 0.96 8.14 -2.39 -0.02 0.94 16 35 H 0.11 1.77 7.82 -2.39 -0.02 1.75 16 36 H 0.06 2.01 6.91 -2.39 -0.02 2.00 16 37 H 0.09 2.38 6.83 -2.39 -0.02 2.37 16 38 H 0.04 1.15 8.14 -2.39 -0.02 1.13 16 39 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 40 H 0.07 2.41 8.14 -2.39 -0.02 2.39 16 41 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.05 2.99 6.16 -2.39 -0.01 2.97 16 43 H 0.26 14.76 8.31 -92.71 -0.77 13.99 16 44 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 45 H 0.06 2.36 6.75 -2.39 -0.02 2.35 16 46 H 0.06 2.20 6.83 -2.39 -0.02 2.18 16 47 H 0.09 2.20 7.82 -2.39 -0.02 2.18 16 48 H 0.06 1.05 8.13 -2.39 -0.02 1.03 16 49 H 0.14 1.17 8.14 -2.39 -0.02 1.15 16 50 H 0.05 0.92 8.13 -2.39 -0.02 0.90 16 Total: -1.00 -79.53 392.35 4.17 -75.36 By element: Atomic # 1 Polarization: 13.54 SS G_CDS: 0.92 Total: 14.46 kcal Atomic # 6 Polarization: -12.54 SS G_CDS: 5.29 Total: -7.25 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -3.69 Total: -78.41 kcal Atomic # 8 Polarization: -50.51 SS G_CDS: -0.38 Total: -50.89 kcal Atomic # 14 Polarization: 44.70 SS G_CDS: 2.03 Total: 46.73 kcal Total: -79.53 4.17 -75.36 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001173584135.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.047 kcal (2) G-P(sol) polarization free energy of solvation -79.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -197.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.168 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.359 kcal (6) G-S(sol) free energy of system = (1) + (5) -193.407 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds