Wall clock time and date at job start Sat Apr 11 2020 05:46:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 O 1.45196 * 109.46965 * 2 1 4 4 C 1.34232 * 117.00372 * 179.97438 * 3 2 1 5 5 O 1.20829 * 119.99469 * 0.02562 * 4 3 2 6 6 C 1.50698 * 120.00350 * 179.97438 * 4 3 2 7 7 N 1.46899 * 109.47158 * 182.90920 * 6 4 3 8 8 C 1.46901 * 110.99753 * 286.29880 * 7 6 4 9 9 C 1.50703 * 109.46948 * 296.99495 * 8 7 6 10 10 H 1.07999 * 119.99934 * 4.04766 * 9 8 7 11 11 C 1.37876 * 119.99906 * 184.04739 * 9 8 7 12 12 N 1.31513 * 120.00196 * 0.02562 * 11 9 8 13 13 Si 1.86797 * 119.99930 * 180.02562 * 11 9 8 14 14 H 1.48503 * 109.47087 * 359.97438 * 13 11 9 15 15 H 1.48504 * 109.47159 * 119.99815 * 13 11 9 16 16 H 1.48502 * 109.47392 * 239.99917 * 13 11 9 17 17 C 1.46898 * 111.00160 * 162.34053 * 7 6 4 18 18 C 1.50696 * 109.47229 * 200.78080 * 17 7 6 19 19 C 1.38768 * 120.34400 * 96.13889 * 18 17 7 20 20 C 1.38375 * 118.53158 * 180.22762 * 19 18 17 21 21 C 1.39070 * 119.16052 * 359.50845 * 20 19 18 22 22 N 1.38992 * 119.69180 * 180.22403 * 21 20 19 23 23 C 1.46502 * 119.99849 * 5.27566 * 22 21 20 24 24 C 1.46499 * 119.99985 * 185.27249 * 22 21 20 25 25 N 1.32445 * 120.61790 * 0.50597 * 21 20 19 26 26 C 1.32137 * 121.58886 * 359.73743 * 25 21 20 27 27 F 1.35103 * 119.60410 * 180.02562 * 26 25 21 28 28 H 1.08998 * 109.47066 * 299.99535 * 1 2 3 29 29 H 1.08995 * 109.46732 * 60.00535 * 1 2 3 30 30 H 1.09007 * 109.46550 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47382 * 239.99753 * 2 1 3 32 32 H 1.09005 * 109.47237 * 120.00065 * 2 1 3 33 33 H 1.08997 * 109.47044 * 62.90645 * 6 4 3 34 34 H 1.08998 * 109.47062 * 302.90357 * 6 4 3 35 35 H 1.08995 * 109.47443 * 56.99320 * 8 7 6 36 36 H 1.09003 * 109.46819 * 176.99793 * 8 7 6 37 37 H 0.96996 * 120.00164 * 180.02562 * 12 11 9 38 38 H 1.09006 * 109.46596 * 80.78639 * 17 7 6 39 39 H 1.08998 * 109.47369 * 320.78728 * 17 7 6 40 40 H 1.07990 * 120.73157 * 359.95664 * 19 18 17 41 41 H 1.08005 * 120.41688 * 179.74619 * 20 19 18 42 42 H 1.09003 * 109.46813 * 89.99779 * 23 22 21 43 43 H 1.08997 * 109.46813 * 209.99662 * 23 22 21 44 44 H 1.08996 * 109.47483 * 330.00135 * 23 22 21 45 45 H 1.08997 * 109.47213 * 60.00251 * 24 22 21 46 46 H 1.09000 * 109.47142 * 180.02562 * 24 22 21 47 47 H 1.08999 * 109.47223 * 299.99811 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0140 1.3689 0.0000 4 6 3.3447 1.5449 0.0005 5 8 4.0808 0.5867 0.0005 6 6 3.9207 2.9375 0.0000 7 7 5.3861 2.8613 -0.0696 8 6 5.9520 2.4250 1.2139 9 6 5.6322 3.4447 2.2765 10 1 5.0104 4.2952 2.0391 11 6 6.1336 3.2918 3.5518 12 7 6.8912 2.2564 3.8408 13 14 5.7367 4.5554 4.8690 14 1 4.8724 5.6166 4.2926 15 1 5.0258 3.8931 5.9921 16 1 6.9967 5.1614 5.3694 17 6 5.9608 4.1466 -0.4886 18 6 7.3468 3.9225 -1.0360 19 6 7.5481 3.7920 -2.4028 20 6 8.8357 3.5825 -2.8642 21 6 9.8815 3.5203 -1.9496 22 7 11.1799 3.3150 -2.4014 23 6 11.4583 3.2808 -3.8393 24 6 12.2698 3.1329 -1.4396 25 7 9.6512 3.6493 -0.6518 26 6 8.4321 3.8453 -0.1813 27 9 8.2430 3.9720 1.1505 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5137 -0.8900 30 1 -0.3633 -1.0278 -0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8934 -0.5139 0.8900 33 1 3.6266 3.4527 0.9144 34 1 3.5441 3.4861 -0.8633 35 1 5.5218 1.4630 1.4924 36 1 7.0333 2.3257 1.1192 37 1 7.2435 2.1487 4.7380 38 1 6.0129 4.8180 0.3686 39 1 5.3326 4.5911 -1.2606 40 1 6.7176 3.8482 -3.0908 41 1 9.0266 3.4726 -3.9216 42 1 11.6903 4.2869 -4.1884 43 1 12.3082 2.6252 -4.0292 44 1 10.5836 2.9048 -4.3699 45 1 12.0655 2.2598 -0.8199 46 1 13.2073 2.9867 -1.9762 47 1 12.3479 4.0172 -0.8071 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001233119514.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:22 Heat of formation + Delta-G solvation = -82.227391 kcal Electronic energy + Delta-G solvation = -30448.262820 eV Core-core repulsion = 26160.160177 eV Total energy + Delta-G solvation = -4288.102643 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.70986 -41.40497 -41.11727 -38.72407 -37.47660 -36.94895 -34.57721 -33.65352 -32.64936 -31.71959 -29.68760 -28.99644 -28.53769 -26.62683 -25.33825 -24.21544 -23.91551 -22.97902 -21.97536 -21.27713 -19.00459 -18.69524 -18.40192 -18.27020 -17.66036 -17.18112 -17.07397 -16.76993 -16.55470 -16.04531 -15.78015 -15.69749 -15.56853 -15.51747 -14.88265 -14.53726 -14.26994 -14.08642 -13.96258 -13.76510 -13.56731 -13.46333 -13.23271 -13.17116 -13.05901 -12.93414 -12.78772 -12.60964 -12.48419 -12.43601 -12.40706 -12.22944 -11.89948 -11.62498 -11.44001 -11.24677 -10.85338 -10.53623 -10.49667 -10.37476 -9.05450 -8.44912 -8.06842 -6.23592 0.21197 0.46409 1.35856 1.37915 1.39778 1.47891 1.75694 1.91965 2.41120 2.78559 3.05348 3.21387 3.51681 3.78243 3.96337 4.00684 4.03611 4.15089 4.17004 4.17868 4.36691 4.38989 4.42189 4.46523 4.52281 4.58820 4.69211 4.80694 4.87944 4.91636 4.92793 4.95399 4.96604 5.05884 5.12328 5.18215 5.32098 5.36736 5.44182 5.56787 5.69117 5.86238 5.96239 6.01988 6.23619 6.34390 6.43860 6.94516 6.99900 7.03140 7.46234 8.97743 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.009216 B = 0.004020 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3037.385839 B = 6964.044983 C = 9229.943289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 O -0.363 6.363 4 C 0.465 3.535 5 O -0.530 6.530 6 C 0.066 3.934 7 N -0.530 5.530 8 C 0.203 3.797 9 C -0.539 4.539 10 H 0.067 0.933 11 C 0.016 3.984 12 N -0.927 5.927 13 Si 0.946 3.054 14 H -0.254 1.254 15 H -0.282 1.282 16 H -0.288 1.288 17 C 0.111 3.889 18 C -0.206 4.206 19 C 0.010 3.990 20 C -0.243 4.243 21 C 0.407 3.593 22 N -0.623 5.623 23 C 0.091 3.909 24 C 0.106 3.894 25 N -0.614 5.614 26 C 0.329 3.671 27 F -0.114 7.114 28 H 0.065 0.935 29 H 0.076 0.924 30 H 0.099 0.901 31 H 0.068 0.932 32 H 0.050 0.950 33 H 0.082 0.918 34 H 0.146 0.854 35 H -0.008 1.008 36 H 0.010 0.990 37 H 0.258 0.742 38 H 0.041 0.959 39 H 0.117 0.883 40 H 0.181 0.819 41 H 0.178 0.822 42 H 0.065 0.935 43 H 0.092 0.908 44 H 0.084 0.916 45 H 0.032 0.968 46 H 0.108 0.892 47 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.750 3.370 -19.559 19.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.022 4.022 3 O -0.281 6.281 4 C 0.308 3.692 5 O -0.418 6.418 6 C -0.063 4.063 7 N -0.254 5.254 8 C 0.077 3.923 9 C -0.578 4.578 10 H 0.085 0.915 11 C -0.183 4.183 12 N -0.567 5.567 13 Si 0.772 3.228 14 H -0.178 1.178 15 H -0.208 1.208 16 H -0.214 1.214 17 C -0.016 4.016 18 C -0.213 4.213 19 C -0.016 4.016 20 C -0.267 4.267 21 C 0.171 3.829 22 N -0.338 5.338 23 C -0.050 4.050 24 C -0.037 4.037 25 N -0.339 5.339 26 C 0.177 3.823 27 F -0.093 7.093 28 H 0.084 0.916 29 H 0.095 0.905 30 H 0.118 0.882 31 H 0.087 0.913 32 H 0.068 0.932 33 H 0.100 0.900 34 H 0.164 0.836 35 H 0.010 0.990 36 H 0.028 0.972 37 H 0.067 0.933 38 H 0.060 0.940 39 H 0.135 0.865 40 H 0.199 0.801 41 H 0.195 0.805 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.103 0.897 45 H 0.051 0.949 46 H 0.126 0.874 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -0.489 2.546 -19.229 19.403 hybrid contribution -0.328 0.488 2.281 2.356 sum -0.817 3.034 -16.948 17.237 Atomic orbital electron populations 1.21795 0.89725 1.04333 1.03847 1.23221 0.97435 0.79729 1.01793 1.86472 1.23973 1.33285 1.84336 1.24171 0.80318 0.93392 0.71324 1.90630 1.61140 1.44339 1.45723 1.21634 0.89629 0.89450 1.05559 1.62099 1.02877 1.28517 1.31920 1.19481 0.94532 0.93981 0.84342 1.21877 1.30966 1.09140 0.95842 0.91462 1.25709 0.94743 0.96951 1.00909 1.70125 1.35113 1.30732 1.20690 0.85683 0.77880 0.79777 0.79455 1.17789 1.20838 1.21434 1.20781 0.91146 0.89951 0.99708 1.20397 0.94959 1.11117 0.94844 1.21492 0.97825 0.89521 0.92732 1.21771 0.91442 1.11782 1.01665 1.18334 0.87505 0.90405 0.86617 1.46543 1.03037 1.76425 1.07770 1.22030 1.03394 1.02899 0.76707 1.21503 0.89518 1.00051 0.92677 1.66209 1.24355 1.25433 1.17856 1.18132 0.89504 0.95639 0.79055 1.91746 1.94739 1.91987 1.30792 0.91616 0.90457 0.88208 0.91310 0.93162 0.90027 0.83619 0.98992 0.97171 0.93313 0.94034 0.86455 0.80150 0.80486 0.91635 0.88948 0.89723 0.94942 0.87403 0.94238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.53 10.29 71.98 0.74 -1.79 16 2 C 0.05 1.43 6.19 71.98 0.45 1.87 16 3 O -0.36 -11.97 10.22 -51.43 -0.53 -12.49 16 4 C 0.46 18.37 7.73 71.24 0.55 18.92 16 5 O -0.53 -25.49 14.59 21.95 0.32 -25.17 16 6 C 0.07 2.38 5.42 85.56 0.46 2.84 16 7 N -0.53 -22.74 4.24 -909.96 -3.86 -26.60 16 8 C 0.20 11.30 4.29 85.56 0.37 11.66 16 9 C -0.54 -30.16 6.19 25.60 0.16 -30.00 16 10 H 0.07 3.52 6.11 -2.91 -0.02 3.51 16 11 C 0.02 0.94 5.46 84.65 0.46 1.40 16 12 N -0.93 -59.24 13.29 21.45 0.28 -58.96 16 13 Si 0.95 45.79 29.54 68.60 2.03 47.82 16 14 H -0.25 -11.40 7.11 99.48 0.71 -10.69 16 15 H -0.28 -13.42 7.11 99.48 0.71 -12.72 16 16 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 17 C 0.11 4.04 4.86 85.56 0.42 4.46 16 18 C -0.21 -7.63 5.29 -19.71 -0.10 -7.73 16 19 C 0.01 0.26 9.82 22.43 0.22 0.48 16 20 C -0.24 -6.06 9.27 22.50 0.21 -5.85 16 21 C 0.41 13.02 7.37 133.04 0.98 14.00 16 22 N -0.62 -15.28 3.39 -754.02 -2.56 -17.84 16 23 C 0.09 1.18 10.25 127.77 1.31 2.49 16 24 C 0.11 2.53 10.19 127.77 1.30 3.83 16 25 N -0.61 -25.76 9.58 -194.34 -1.86 -27.62 16 26 C 0.33 14.86 7.46 84.68 0.63 15.49 16 27 F -0.11 -6.18 13.44 44.97 0.60 -5.58 16 28 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.08 1.21 8.14 -2.39 -0.02 1.20 16 30 H 0.10 1.32 8.14 -2.38 -0.02 1.31 16 31 H 0.07 1.82 8.13 -2.39 -0.02 1.80 16 32 H 0.05 1.54 8.13 -2.38 -0.02 1.52 16 33 H 0.08 3.15 6.29 -2.39 -0.02 3.14 16 34 H 0.15 3.67 7.63 -2.39 -0.02 3.66 16 35 H -0.01 -0.52 6.45 -2.39 -0.02 -0.53 16 36 H 0.01 0.64 5.21 -2.39 -0.01 0.63 16 37 H 0.26 15.71 8.31 -92.71 -0.77 14.94 16 38 H 0.04 1.74 5.95 -2.38 -0.01 1.72 16 39 H 0.12 2.99 7.52 -2.39 -0.02 2.98 16 40 H 0.18 3.20 8.06 -2.92 -0.02 3.18 16 41 H 0.18 2.75 6.02 -2.91 -0.02 2.74 16 42 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 43 H 0.09 0.81 7.92 -2.39 -0.02 0.80 16 44 H 0.08 0.89 5.97 -2.39 -0.01 0.88 16 45 H 0.03 0.92 8.14 -2.39 -0.02 0.90 16 46 H 0.11 1.61 7.79 -2.39 -0.02 1.60 16 47 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 Total: -1.00 -85.83 384.04 3.58 -82.25 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: 0.99 Total: 12.09 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 8.15 Total: 32.09 kcal Atomic # 7 Polarization: -123.02 SS G_CDS: -7.99 Total: -131.01 kcal Atomic # 8 Polarization: -37.46 SS G_CDS: -0.21 Total: -37.66 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.60 Total: -5.58 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.82 kcal Total: -85.83 3.58 -82.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001233119514.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.026 kcal (2) G-P(sol) polarization free energy of solvation -85.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.227 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds