Wall clock time and date at job start Sat Apr 11 2020 05:46:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31265 * 119.79849 * 2 1 4 4 C 1.33058 * 121.71851 * 180.02562 * 3 2 1 5 5 C 1.47848 * 119.45658 * 180.02562 * 4 3 2 6 6 C 1.40060 * 120.86639 * 179.71811 * 5 4 3 7 7 N 1.32025 * 119.01193 * 179.73968 * 6 5 4 8 8 C 1.32624 * 120.89080 * 0.53110 * 7 6 5 9 9 N 1.38156 * 119.03750 * 179.72628 * 8 7 6 10 10 C 1.46951 * 111.00195 * 123.82082 * 9 8 7 11 11 C 1.53052 * 109.36468 * 176.81093 * 10 9 8 12 12 N 1.46954 * 109.36623 * 58.40125 * 11 10 9 13 13 C 1.46899 * 111.00072 * 176.81020 * 12 11 10 14 14 C 1.46954 * 110.87608 * 300.68195 * 12 11 10 15 15 C 1.46961 * 110.99867 * 0.02562 * 9 8 7 16 16 N 1.32618 * 121.92095 * 359.74471 * 8 7 6 17 17 C 1.32021 * 120.89807 * 359.97438 * 16 8 7 18 18 C 1.39976 * 121.08689 * 0.02562 * 4 3 2 19 19 C 1.36548 * 119.46246 * 0.02562 * 18 4 3 20 20 C 1.40948 * 119.79746 * 180.02562 * 2 1 3 21 21 C 1.41031 * 120.54942 * 359.72397 * 20 2 1 22 22 H 1.08004 * 119.99720 * 334.79922 * 21 20 2 23 23 C 1.39985 * 120.00431 * 154.79434 * 21 20 2 24 24 N 1.30820 * 119.99698 * 343.88967 * 23 21 20 25 25 Si 1.86796 * 120.00131 * 163.87970 * 23 21 20 26 26 H 1.48502 * 109.47272 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46907 * 120.00477 * 25 23 21 28 28 H 1.48503 * 109.47259 * 240.00214 * 25 23 21 29 29 H 1.08998 * 109.46989 * 269.97231 * 1 2 3 30 30 H 1.08997 * 109.47173 * 29.97297 * 1 2 3 31 31 H 1.08994 * 109.47172 * 149.97695 * 1 2 3 32 32 H 1.08002 * 120.50045 * 0.02562 * 6 5 4 33 33 H 1.09006 * 109.48899 * 296.77708 * 10 9 8 34 34 H 1.09002 * 109.49179 * 56.84234 * 10 9 8 35 35 H 1.08997 * 109.48490 * 298.42841 * 11 10 9 36 36 H 1.09005 * 109.48389 * 178.37068 * 11 10 9 37 37 H 1.08998 * 109.46657 * 183.79666 * 13 12 11 38 38 H 1.08993 * 109.47057 * 303.80017 * 13 12 11 39 39 H 1.09003 * 109.46903 * 63.80228 * 13 12 11 40 40 H 1.09001 * 109.49230 * 299.34440 * 14 12 11 41 41 H 1.09012 * 109.50481 * 179.30147 * 14 12 11 42 42 H 1.09001 * 109.48697 * 303.15363 * 15 9 8 43 43 H 1.09000 * 109.48805 * 63.20097 * 15 9 8 44 44 H 1.07999 * 120.49066 * 179.97438 * 17 16 8 45 45 H 1.08004 * 120.26271 * 180.02562 * 18 4 3 46 46 H 1.08007 * 120.78386 * 179.97438 * 19 18 4 47 47 H 0.97004 * 119.99445 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4891 1.1837 -0.0005 5 6 4.1727 2.4947 0.0001 6 6 5.5709 2.5760 0.0055 7 7 6.1431 3.7658 0.0006 8 6 5.4125 4.8727 0.0013 9 7 6.0512 6.0978 0.0018 10 6 5.6175 6.9184 -1.1375 11 6 6.2858 8.2928 -1.0565 12 7 7.7458 8.1256 -1.0573 13 6 8.4250 9.4282 -1.0567 14 6 8.1795 7.3049 0.0820 15 6 7.5113 5.9304 0.0009 16 7 4.0868 4.8379 0.0018 17 6 3.4388 3.6876 0.0012 18 6 4.2516 0.0098 -0.0016 19 6 3.6205 -1.2010 -0.0027 20 6 2.2074 -1.2231 -0.0005 21 6 1.5097 -2.4487 0.0048 22 1 0.5087 -2.4985 0.4073 23 6 2.1144 -3.6007 -0.5118 24 7 3.1727 -3.4982 -1.2739 25 14 1.4103 -5.2842 -0.1127 26 1 0.2202 -5.1285 0.7619 27 1 1.0135 -5.9658 -1.3710 28 1 2.4370 -6.0969 0.5879 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 6.1722 1.6789 0.0089 33 1 5.9042 6.4289 -2.0683 34 1 4.5345 7.0383 -1.1079 35 1 5.9776 8.7935 -0.1387 36 1 5.9880 8.8932 -1.9162 37 1 9.5021 9.2762 -1.1253 38 1 8.0856 10.0152 -1.9100 39 1 8.1910 9.9594 -0.1341 40 1 7.8930 7.7944 1.0128 41 1 9.2626 7.1850 0.0528 42 1 7.8090 5.3301 0.8606 43 1 7.8193 5.4294 -0.9168 44 1 2.3590 3.6670 0.0020 45 1 5.3304 0.0615 -0.0016 46 1 4.1878 -2.1201 -0.0040 47 1 3.5915 -4.2965 -1.6321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001235916384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:29 Heat of formation + Delta-G solvation = 95.634355 kcal Electronic energy + Delta-G solvation = -28182.358278 eV Core-core repulsion = 24365.030275 eV Total energy + Delta-G solvation = -3817.328003 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.87796 -39.18106 -38.46682 -35.69568 -34.43264 -33.41443 -32.50147 -31.14803 -31.05935 -30.05828 -28.18227 -27.15882 -25.34229 -24.63921 -24.05906 -23.10291 -22.66627 -21.07778 -20.33840 -20.00248 -17.83710 -17.56195 -16.97050 -15.99459 -15.53326 -15.40197 -15.23656 -15.14762 -14.93549 -14.69124 -14.34991 -14.08792 -13.80737 -13.61774 -13.15882 -13.07505 -12.70686 -12.59940 -12.42226 -12.20267 -11.99726 -11.84747 -11.71881 -11.49843 -11.45738 -11.42084 -11.13290 -11.10644 -11.04433 -10.86731 -10.56996 -10.37609 -9.94560 -9.88618 -9.56821 -8.83161 -8.63507 -8.46697 -8.33802 -8.19501 -7.34596 -7.08730 -4.66821 1.14431 1.58278 2.50462 2.80473 2.87998 2.92921 3.02385 3.36766 3.64240 3.67726 4.11645 4.46225 4.49328 4.67674 4.79290 4.96328 5.02035 5.12009 5.16147 5.21707 5.26251 5.30315 5.33631 5.40555 5.41456 5.57537 5.60149 5.63181 5.80882 5.86263 5.94980 5.97632 6.14742 6.22238 6.41299 6.53834 6.58301 6.60849 6.67348 6.73389 6.73547 6.76718 6.85253 6.95704 7.11278 7.15611 7.41045 7.59621 7.70494 7.73001 8.17422 8.37454 8.47470 8.55582 9.40993 9.74892 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.002051 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.087495 B =13647.152091 C =14271.295710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C 0.014 3.986 3 N -0.446 5.446 4 C 0.002 3.998 5 C -0.098 4.098 6 C 0.145 3.855 7 N -0.542 5.542 8 C 0.446 3.554 9 N -0.462 5.462 10 C 0.069 3.931 11 C 0.057 3.943 12 N -0.548 5.548 13 C 0.026 3.974 14 C 0.054 3.946 15 C 0.074 3.926 16 N -0.524 5.524 17 C 0.168 3.832 18 C -0.123 4.123 19 C -0.141 4.141 20 C 0.074 3.926 21 C -0.423 4.423 22 H 0.092 0.908 23 C 0.070 3.930 24 N -0.772 5.772 25 Si 0.916 3.084 26 H -0.256 1.256 27 H -0.270 1.270 28 H -0.269 1.269 29 H 0.050 0.950 30 H 0.051 0.949 31 H 0.067 0.933 32 H 0.165 0.835 33 H 0.049 0.951 34 H 0.097 0.903 35 H 0.046 0.954 36 H 0.084 0.916 37 H 0.068 0.932 38 H 0.068 0.932 39 H 0.026 0.974 40 H 0.043 0.957 41 H 0.084 0.916 42 H 0.091 0.909 43 H 0.059 0.941 44 H 0.174 0.826 45 H 0.101 0.899 46 H 0.128 0.872 47 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.604 12.909 0.287 14.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.133 4.133 3 N -0.155 5.155 4 C -0.132 4.132 5 C -0.104 4.104 6 C -0.023 4.023 7 N -0.261 5.261 8 C 0.091 3.909 9 N -0.182 5.182 10 C -0.058 4.058 11 C -0.071 4.071 12 N -0.273 5.273 13 C -0.122 4.122 14 C -0.074 4.074 15 C -0.053 4.053 16 N -0.241 5.241 17 C -0.001 4.001 18 C -0.144 4.144 19 C -0.165 4.165 20 C 0.069 3.931 21 C -0.451 4.451 22 H 0.110 0.890 23 C -0.152 4.152 24 N -0.394 5.394 25 Si 0.739 3.261 26 H -0.179 1.179 27 H -0.196 1.196 28 H -0.193 1.193 29 H 0.068 0.932 30 H 0.070 0.930 31 H 0.086 0.914 32 H 0.182 0.818 33 H 0.067 0.933 34 H 0.116 0.884 35 H 0.064 0.936 36 H 0.102 0.898 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.044 0.956 40 H 0.061 0.939 41 H 0.102 0.898 42 H 0.109 0.891 43 H 0.078 0.922 44 H 0.191 0.809 45 H 0.119 0.881 46 H 0.146 0.854 47 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 6.843 14.513 0.123 16.046 hybrid contribution -0.050 -2.495 0.256 2.509 sum 6.792 12.018 0.379 13.810 Atomic orbital electron populations 1.20275 0.90813 1.01400 1.00550 1.20986 0.95176 0.87829 1.09315 1.66673 1.08410 1.30639 1.09759 1.18275 0.89119 0.89557 1.16281 1.20262 0.94332 0.94860 1.00975 1.23048 0.91854 0.94537 0.92827 1.68149 1.41065 0.98701 1.18141 1.20713 0.86778 0.88429 0.95012 1.58595 1.07463 1.10535 1.41655 1.22227 1.01090 0.92266 0.90186 1.22207 0.87040 0.96376 1.01469 1.62183 1.06190 1.15717 1.43164 1.22338 0.99504 0.89840 1.00535 1.22275 0.99846 0.93452 0.91807 1.22033 0.84069 0.95869 1.03360 1.67857 1.08409 1.30703 1.17136 1.23215 1.00842 0.85440 0.90566 1.21227 0.98470 0.93408 1.01268 1.21298 0.94670 0.96650 1.03893 1.18449 0.92573 0.93226 0.88890 1.19789 1.01783 0.91811 1.31702 0.89030 1.26141 0.94219 1.02295 0.92517 1.69792 1.16716 1.32613 1.20329 0.86106 0.80312 0.80059 0.79585 1.17900 1.19553 1.19340 0.93153 0.92995 0.91395 0.81822 0.93288 0.88430 0.93618 0.89755 0.91298 0.91342 0.95569 0.93916 0.89775 0.89100 0.92246 0.80876 0.88112 0.85429 0.90072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 9.57 36.00 0.34 -1.06 16 2 C 0.01 0.31 6.86 -81.81 -0.56 -0.25 16 3 N -0.45 -10.24 9.40 -5.40 -0.05 -10.30 16 4 C 0.00 0.05 6.74 -82.75 -0.56 -0.51 16 5 C -0.10 -1.93 5.91 -104.60 -0.62 -2.55 16 6 C 0.15 2.60 10.68 -16.79 -0.18 2.42 16 7 N -0.54 -9.56 8.65 -13.62 -0.12 -9.68 16 8 C 0.45 7.83 7.17 -322.84 -2.31 5.52 16 9 N -0.46 -6.86 4.77 -175.24 -0.84 -7.69 16 10 C 0.07 0.89 5.45 -3.77 -0.02 0.87 16 11 C 0.06 0.59 5.62 -3.77 -0.02 0.57 16 12 N -0.55 -5.57 4.97 -242.76 -1.21 -6.77 16 13 C 0.03 0.20 9.60 60.06 0.58 0.77 16 14 C 0.05 0.56 5.62 -3.77 -0.02 0.54 16 15 C 0.07 0.96 4.76 -3.77 -0.02 0.94 16 16 N -0.52 -9.63 9.68 -13.62 -0.13 -9.76 16 17 C 0.17 3.17 10.85 -16.79 -0.18 2.99 16 18 C -0.12 -2.69 9.40 -39.54 -0.37 -3.06 16 19 C -0.14 -3.33 8.73 -39.02 -0.34 -3.67 16 20 C 0.07 1.78 5.58 -106.64 -0.59 1.19 16 21 C -0.42 -9.81 8.13 -37.87 -0.31 -10.12 16 22 H 0.09 2.00 6.87 -52.48 -0.36 1.64 16 23 C 0.07 1.54 5.19 -17.33 -0.09 1.45 16 24 N -0.77 -17.71 10.94 55.55 0.61 -17.10 16 25 Si 0.92 16.43 29.59 -169.99 -5.03 11.40 16 26 H -0.26 -4.53 7.11 56.52 0.40 -4.13 16 27 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 28 H -0.27 -4.78 7.11 56.52 0.40 -4.38 16 29 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 31 H 0.07 1.28 6.77 -51.93 -0.35 0.92 16 32 H 0.16 2.59 6.28 -52.49 -0.33 2.26 16 33 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 34 H 0.10 1.29 7.63 -51.93 -0.40 0.90 16 35 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 36 H 0.08 0.72 8.13 -51.93 -0.42 0.30 16 37 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.07 0.46 8.13 -51.93 -0.42 0.03 16 39 H 0.03 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 41 H 0.08 0.72 8.14 -51.92 -0.42 0.30 16 42 H 0.09 1.20 7.79 -51.93 -0.40 0.80 16 43 H 0.06 0.83 8.03 -51.93 -0.42 0.41 16 44 H 0.17 3.17 7.62 -52.49 -0.40 2.77 16 45 H 0.10 1.89 6.23 -52.48 -0.33 1.57 16 46 H 0.13 3.06 6.25 -52.48 -0.33 2.73 16 47 H 0.29 5.94 8.30 -40.82 -0.34 5.61 16 LS Contribution 378.34 15.07 5.70 5.70 Total: -1.00 -26.73 378.34 -13.01 -39.74 By element: Atomic # 1 Polarization: 15.10 SS G_CDS: -6.67 Total: 8.43 kcal Atomic # 6 Polarization: 1.31 SS G_CDS: -5.28 Total: -3.97 kcal Atomic # 7 Polarization: -59.57 SS G_CDS: -1.73 Total: -61.31 kcal Atomic # 14 Polarization: 16.43 SS G_CDS: -5.03 Total: 11.40 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -26.73 -13.01 -39.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235916384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.378 kcal (2) G-P(sol) polarization free energy of solvation -26.730 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 108.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.013 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.743 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds