Wall clock time and date at job start Sat Apr 11 2020 05:46:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.31265 * 119.79849 * 2 1 4 4 C 1.33058 * 121.71851 * 180.02562 * 3 2 1 5 5 C 1.47848 * 119.45658 * 180.02562 * 4 3 2 6 6 C 1.40060 * 120.86639 * 179.71811 * 5 4 3 7 7 N 1.32025 * 119.01193 * 179.73968 * 6 5 4 8 8 C 1.32624 * 120.89080 * 0.53110 * 7 6 5 9 9 N 1.38156 * 119.03750 * 179.72628 * 8 7 6 10 10 C 1.46951 * 111.00195 * 123.82082 * 9 8 7 11 11 C 1.53052 * 109.36468 * 176.81093 * 10 9 8 12 12 N 1.46954 * 109.36623 * 58.40125 * 11 10 9 13 13 C 1.46899 * 111.00072 * 176.81020 * 12 11 10 14 14 C 1.46954 * 110.87608 * 300.68195 * 12 11 10 15 15 C 1.46961 * 110.99867 * 0.02562 * 9 8 7 16 16 N 1.32618 * 121.92095 * 359.74471 * 8 7 6 17 17 C 1.32021 * 120.89807 * 359.97438 * 16 8 7 18 18 C 1.39976 * 121.08689 * 0.02562 * 4 3 2 19 19 C 1.36548 * 119.46246 * 0.02562 * 18 4 3 20 20 C 1.40948 * 119.79746 * 180.02562 * 2 1 3 21 21 C 1.41031 * 120.54942 * 359.72397 * 20 2 1 22 22 H 1.08004 * 119.99720 * 334.79922 * 21 20 2 23 23 C 1.39985 * 120.00431 * 154.79434 * 21 20 2 24 24 N 1.30820 * 119.99698 * 343.88967 * 23 21 20 25 25 Si 1.86796 * 120.00131 * 163.87970 * 23 21 20 26 26 H 1.48502 * 109.47272 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46907 * 120.00477 * 25 23 21 28 28 H 1.48503 * 109.47259 * 240.00214 * 25 23 21 29 29 H 1.08998 * 109.46989 * 269.97231 * 1 2 3 30 30 H 1.08997 * 109.47173 * 29.97297 * 1 2 3 31 31 H 1.08994 * 109.47172 * 149.97695 * 1 2 3 32 32 H 1.08002 * 120.50045 * 0.02562 * 6 5 4 33 33 H 1.09006 * 109.48899 * 296.77708 * 10 9 8 34 34 H 1.09002 * 109.49179 * 56.84234 * 10 9 8 35 35 H 1.08997 * 109.48490 * 298.42841 * 11 10 9 36 36 H 1.09005 * 109.48389 * 178.37068 * 11 10 9 37 37 H 1.08998 * 109.46657 * 183.79666 * 13 12 11 38 38 H 1.08993 * 109.47057 * 303.80017 * 13 12 11 39 39 H 1.09003 * 109.46903 * 63.80228 * 13 12 11 40 40 H 1.09001 * 109.49230 * 299.34440 * 14 12 11 41 41 H 1.09012 * 109.50481 * 179.30147 * 14 12 11 42 42 H 1.09001 * 109.48697 * 303.15363 * 15 9 8 43 43 H 1.09000 * 109.48805 * 63.20097 * 15 9 8 44 44 H 1.07999 * 120.49066 * 179.97438 * 17 16 8 45 45 H 1.08004 * 120.26271 * 180.02562 * 18 4 3 46 46 H 1.08007 * 120.78386 * 179.97438 * 19 18 4 47 47 H 0.97004 * 119.99445 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1593 1.1391 0.0000 4 6 3.4891 1.1837 -0.0005 5 6 4.1727 2.4947 0.0001 6 6 5.5709 2.5760 0.0055 7 7 6.1431 3.7658 0.0006 8 6 5.4125 4.8727 0.0013 9 7 6.0512 6.0978 0.0018 10 6 5.6175 6.9184 -1.1375 11 6 6.2858 8.2928 -1.0565 12 7 7.7458 8.1256 -1.0573 13 6 8.4250 9.4282 -1.0567 14 6 8.1795 7.3049 0.0820 15 6 7.5113 5.9304 0.0009 16 7 4.0868 4.8379 0.0018 17 6 3.4388 3.6876 0.0012 18 6 4.2516 0.0098 -0.0016 19 6 3.6205 -1.2010 -0.0027 20 6 2.2074 -1.2231 -0.0005 21 6 1.5097 -2.4487 0.0048 22 1 0.5087 -2.4985 0.4073 23 6 2.1144 -3.6007 -0.5118 24 7 3.1727 -3.4982 -1.2739 25 14 1.4103 -5.2842 -0.1127 26 1 0.2202 -5.1285 0.7619 27 1 1.0135 -5.9658 -1.3710 28 1 2.4370 -6.0969 0.5879 29 1 -0.3633 -0.0005 1.0277 30 1 -0.3633 0.8902 -0.5134 31 1 -0.3633 -0.8897 -0.5142 32 1 6.1722 1.6789 0.0089 33 1 5.9042 6.4289 -2.0683 34 1 4.5345 7.0383 -1.1079 35 1 5.9776 8.7935 -0.1387 36 1 5.9880 8.8932 -1.9162 37 1 9.5021 9.2762 -1.1253 38 1 8.0856 10.0152 -1.9100 39 1 8.1910 9.9594 -0.1341 40 1 7.8930 7.7944 1.0128 41 1 9.2626 7.1850 0.0528 42 1 7.8090 5.3301 0.8606 43 1 7.8193 5.4294 -0.9168 44 1 2.3590 3.6670 0.0020 45 1 5.3304 0.0615 -0.0016 46 1 4.1878 -2.1201 -0.0040 47 1 3.5915 -4.2965 -1.6321 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001235916384.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:28 Heat of formation + Delta-G solvation = 81.585623 kcal Electronic energy + Delta-G solvation = -28182.967477 eV Core-core repulsion = 24365.030275 eV Total energy + Delta-G solvation = -3817.937202 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 339.175 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.24970 -40.52013 -39.86127 -36.80608 -36.03251 -34.86379 -34.05947 -32.78872 -32.04766 -31.49485 -29.23936 -28.80689 -26.79165 -25.91712 -25.18877 -24.24021 -24.01254 -22.66403 -21.98576 -20.99387 -19.33941 -18.99526 -18.42256 -17.55407 -16.92547 -16.64887 -16.47286 -16.15732 -16.08734 -15.79423 -15.58398 -15.45703 -15.17150 -14.99068 -14.60315 -14.49018 -14.19158 -13.82499 -13.55044 -13.51593 -13.33760 -13.17014 -13.00518 -12.93037 -12.73285 -12.64317 -12.43887 -12.30157 -12.07173 -12.03267 -11.99464 -11.79903 -11.58219 -11.38957 -11.07337 -10.35197 -10.16391 -9.92521 -9.79515 -9.36256 -8.96900 -8.72331 -6.40851 -0.35224 0.11903 0.87304 1.09880 1.40721 1.52527 1.56183 2.11667 2.15456 2.56859 2.88946 2.93430 3.12804 3.55562 3.64929 3.68635 3.73468 3.86519 3.96614 4.06517 4.12104 4.17975 4.32539 4.37045 4.50722 4.57885 4.59730 4.63702 4.65514 4.77597 4.82807 4.86277 4.90665 4.95819 5.00145 5.02608 5.04765 5.05981 5.13471 5.22797 5.28533 5.50577 5.56983 5.67147 5.77406 5.91200 5.97751 5.99422 6.04322 6.22031 6.45160 6.66853 6.74749 7.11738 7.66871 8.14208 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.031771 B = 0.002051 C = 0.001962 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.087495 B =13647.152091 C =14271.295710 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.008 4.008 3 N -0.459 5.459 4 C 0.000 4.000 5 C -0.122 4.122 6 C 0.158 3.842 7 N -0.546 5.546 8 C 0.449 3.551 9 N -0.465 5.465 10 C 0.071 3.929 11 C 0.065 3.935 12 N -0.560 5.560 13 C 0.027 3.973 14 C 0.062 3.938 15 C 0.076 3.924 16 N -0.534 5.534 17 C 0.172 3.828 18 C -0.128 4.128 19 C -0.161 4.161 20 C 0.044 3.956 21 C -0.448 4.448 22 H 0.098 0.902 23 C 0.033 3.967 24 N -0.804 5.804 25 Si 0.987 3.013 26 H -0.251 1.251 27 H -0.266 1.266 28 H -0.265 1.265 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.069 0.931 32 H 0.185 0.815 33 H 0.039 0.961 34 H 0.091 0.909 35 H 0.046 0.954 36 H 0.105 0.895 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.030 0.970 40 H 0.043 0.957 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.048 0.952 44 H 0.175 0.825 45 H 0.127 0.873 46 H 0.118 0.882 47 H 0.296 0.704 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.506 14.191 0.362 16.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.153 4.153 3 N -0.167 5.167 4 C -0.135 4.135 5 C -0.128 4.128 6 C -0.010 4.010 7 N -0.264 5.264 8 C 0.094 3.906 9 N -0.186 5.186 10 C -0.056 4.056 11 C -0.064 4.064 12 N -0.285 5.285 13 C -0.121 4.121 14 C -0.067 4.067 15 C -0.051 4.051 16 N -0.252 5.252 17 C 0.004 3.996 18 C -0.148 4.148 19 C -0.186 4.186 20 C 0.040 3.960 21 C -0.476 4.476 22 H 0.115 0.885 23 C -0.185 4.185 24 N -0.428 5.428 25 Si 0.807 3.193 26 H -0.174 1.174 27 H -0.191 1.191 28 H -0.190 1.190 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.088 0.912 32 H 0.201 0.799 33 H 0.057 0.943 34 H 0.109 0.891 35 H 0.064 0.936 36 H 0.123 0.877 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.049 0.951 40 H 0.061 0.939 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.067 0.933 44 H 0.192 0.808 45 H 0.145 0.855 46 H 0.136 0.864 47 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 7.749 15.837 0.193 17.632 hybrid contribution -0.186 -2.634 0.220 2.650 sum 7.564 13.203 0.414 15.221 Atomic orbital electron populations 1.20265 0.88653 1.01909 1.01530 1.21528 0.96897 0.87663 1.09250 1.66749 1.08969 1.30617 1.10401 1.18655 0.89135 0.90636 1.15062 1.20197 0.95087 0.94025 1.03536 1.23362 0.91384 0.95389 0.90851 1.68286 1.40764 0.98643 1.18733 1.21214 0.86791 0.89470 0.93141 1.58696 1.08555 1.09223 1.42131 1.22276 1.01105 0.93346 0.88841 1.22172 0.87209 0.94565 1.02426 1.62197 1.06084 1.17235 1.43027 1.22394 0.99870 0.88554 1.01236 1.22232 1.00651 0.91805 0.91984 1.22088 0.82841 0.97689 1.02507 1.67929 1.08895 1.30282 1.18055 1.23254 1.01033 0.85532 0.89778 1.21477 0.99908 0.92782 1.00651 1.21345 0.94923 0.97007 1.05317 1.18800 0.93137 0.94250 0.89856 1.20014 1.02376 0.92356 1.32840 0.88451 1.26954 0.94321 1.05492 0.91738 1.69831 1.17914 1.33964 1.21113 0.85054 0.79573 0.75294 0.79357 1.17444 1.19063 1.19000 0.91835 0.91992 0.91250 0.79864 0.94267 0.89069 0.93598 0.87706 0.90277 0.90294 0.95119 0.93895 0.87768 0.89629 0.93338 0.80792 0.85490 0.86388 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -2.57 9.57 71.24 0.68 -1.89 16 2 C -0.01 -0.36 6.86 43.31 0.30 -0.06 16 3 N -0.46 -21.37 9.40 -171.00 -1.61 -22.98 16 4 C 0.00 0.01 6.74 41.92 0.28 0.30 16 5 C -0.12 -4.77 5.91 -19.85 -0.12 -4.89 16 6 C 0.16 5.51 10.68 85.11 0.91 6.42 16 7 N -0.55 -18.69 8.65 -197.00 -1.70 -20.39 16 8 C 0.45 15.40 7.17 261.50 1.87 17.27 16 9 N -0.47 -13.28 4.77 -708.34 -3.38 -16.66 16 10 C 0.07 1.73 5.45 86.31 0.47 2.21 16 11 C 0.06 1.17 5.62 86.31 0.49 1.66 16 12 N -0.56 -9.92 4.97 -921.95 -4.58 -14.50 16 13 C 0.03 0.32 9.60 127.69 1.23 1.55 16 14 C 0.06 1.12 5.62 86.31 0.49 1.60 16 15 C 0.08 1.85 4.76 86.31 0.41 2.26 16 16 N -0.53 -19.36 9.68 -197.01 -1.91 -21.27 16 17 C 0.17 6.49 10.85 85.11 0.92 7.41 16 18 C -0.13 -5.65 9.40 22.30 0.21 -5.44 16 19 C -0.16 -7.87 8.73 22.63 0.20 -7.67 16 20 C 0.04 2.21 5.58 -21.17 -0.12 2.10 16 21 C -0.45 -21.23 8.13 23.38 0.19 -21.04 16 22 H 0.10 4.32 6.87 -2.91 -0.02 4.30 16 23 C 0.03 1.48 5.19 85.27 0.44 1.92 16 24 N -0.80 -37.69 10.94 21.83 0.24 -37.45 16 25 Si 0.99 33.57 29.59 68.60 2.03 35.60 16 26 H -0.25 -8.27 7.11 99.48 0.71 -7.57 16 27 H -0.27 -8.77 7.11 99.48 0.71 -8.06 16 28 H -0.27 -8.80 7.11 99.48 0.71 -8.10 16 29 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 30 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 31 H 0.07 2.63 6.77 -2.39 -0.02 2.61 16 32 H 0.18 5.53 6.28 -2.91 -0.02 5.51 16 33 H 0.04 1.04 8.14 -2.38 -0.02 1.02 16 34 H 0.09 2.34 7.63 -2.39 -0.02 2.32 16 35 H 0.05 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.10 1.49 8.13 -2.38 -0.02 1.47 16 37 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 38 H 0.08 0.80 8.13 -2.39 -0.02 0.78 16 39 H 0.03 0.35 8.14 -2.39 -0.02 0.33 16 40 H 0.04 0.79 8.14 -2.39 -0.02 0.77 16 41 H 0.10 1.49 8.14 -2.38 -0.02 1.47 16 42 H 0.09 2.15 7.79 -2.39 -0.02 2.13 16 43 H 0.05 1.29 8.03 -2.39 -0.02 1.28 16 44 H 0.18 6.43 7.62 -2.91 -0.02 6.40 16 45 H 0.13 4.72 6.23 -2.91 -0.02 4.71 16 46 H 0.12 5.88 6.25 -2.91 -0.02 5.86 16 47 H 0.30 12.38 8.30 -92.71 -0.77 11.61 16 Total: -1.00 -57.98 378.34 -1.07 -59.05 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: 0.99 Total: 34.89 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: 8.85 Total: 3.71 kcal Atomic # 7 Polarization: -120.31 SS G_CDS: -12.93 Total: -133.24 kcal Atomic # 14 Polarization: 33.57 SS G_CDS: 2.03 Total: 35.60 kcal Total: -57.98 -1.07 -59.05 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001235916384.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.632 kcal (2) G-P(sol) polarization free energy of solvation -57.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.586 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds