Wall clock time and date at job start Sat Apr 11 2020 05:46:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47140 * 2 1 4 4 C 1.36938 * 119.99672 * 264.28735 * 3 2 1 5 5 H 1.07999 * 120.00196 * 188.63609 * 4 3 2 6 6 C 1.38817 * 120.00008 * 8.63973 * 4 3 2 7 7 N 1.31615 * 120.00019 * 24.59781 * 6 4 3 8 8 Si 1.86804 * 119.99850 * 204.60437 * 6 4 3 9 9 H 1.48504 * 109.47024 * 85.02260 * 8 6 4 10 10 H 1.48495 * 109.47151 * 205.02296 * 8 6 4 11 11 H 1.48496 * 109.47132 * 325.02474 * 8 6 4 12 12 C 1.46489 * 120.00353 * 84.28462 * 3 2 1 13 13 C 1.53000 * 109.47387 * 270.00421 * 12 3 2 14 14 C 1.53008 * 109.47286 * 179.97438 * 13 12 3 15 15 N 1.46490 * 109.46942 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99927 * 180.02562 * 15 14 13 17 17 O 1.21680 * 119.99744 * 359.97438 * 16 15 14 18 18 C 1.46683 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.35659 * 126.13192 * 359.97438 * 18 16 15 20 20 N 1.30943 * 114.19107 * 179.74910 * 19 18 16 21 21 C 1.29428 * 117.36546 * 0.51523 * 20 19 18 22 22 C 1.50697 * 124.80569 * 179.76971 * 21 20 19 23 23 C 1.52995 * 109.47321 * 59.69907 * 22 21 20 24 24 C 1.53004 * 109.47052 * 299.69319 * 22 21 20 25 25 C 1.52999 * 109.47235 * 179.69884 * 22 21 20 26 26 S 1.70954 * 110.38850 * 359.50261 * 21 20 19 27 27 H 1.08995 * 109.47335 * 300.00107 * 1 2 3 28 28 H 1.09003 * 109.47101 * 60.00680 * 1 2 3 29 29 H 1.09007 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47533 * 239.99386 * 2 1 3 31 31 H 1.09003 * 109.47101 * 119.99320 * 2 1 3 32 32 H 0.97001 * 119.99543 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47244 * 150.00086 * 12 3 2 34 34 H 1.09001 * 109.47326 * 30.00517 * 12 3 2 35 35 H 1.08998 * 109.47202 * 59.99639 * 13 12 3 36 36 H 1.08999 * 109.46923 * 299.99767 * 13 12 3 37 37 H 1.09003 * 109.46860 * 59.99583 * 14 13 12 38 38 H 1.08999 * 109.46959 * 299.99757 * 14 13 12 39 39 H 0.97000 * 120.00595 * 359.97438 * 15 14 13 40 40 H 1.08004 * 122.90752 * 0.02562 * 19 18 16 41 41 H 1.08999 * 109.47276 * 60.00034 * 23 22 21 42 42 H 1.08999 * 109.46779 * 299.99750 * 23 22 21 43 43 H 1.09001 * 109.47322 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.46873 * 179.97438 * 24 22 21 45 45 H 1.08993 * 109.47105 * 300.00719 * 24 22 21 46 46 H 1.09006 * 109.46404 * 60.00299 * 24 22 21 47 47 H 1.09007 * 109.46825 * 300.00403 * 25 22 21 48 48 H 1.09007 * 109.46998 * 59.99119 * 25 22 21 49 49 H 1.08989 * 109.47627 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1801 5 1 2.8470 2.9502 -1.1715 6 6 2.0731 1.3643 -2.3874 7 7 1.0959 0.4856 -2.4602 8 14 3.0771 1.7728 -3.9088 9 1 4.3047 0.9375 -3.9308 10 1 2.2691 1.4973 -5.1238 11 1 3.4557 3.2085 -3.8812 12 6 2.1434 2.1140 1.2623 13 6 0.8337 2.8475 1.5582 14 6 0.9641 3.6123 2.8770 15 7 -0.2897 4.3150 3.1599 16 6 -0.4076 5.0596 4.2772 17 8 0.5273 5.1477 5.0510 18 6 -1.6628 5.7638 4.5603 19 6 -2.7779 5.7529 3.7877 20 7 -3.7695 6.4613 4.2667 21 6 -3.5719 7.0809 5.3857 22 6 -4.5918 7.9439 6.0829 23 6 -5.8297 7.1067 6.4106 24 6 -4.9885 9.1046 5.1683 25 6 -3.9926 8.4967 7.3776 26 16 -1.9926 6.7758 5.9646 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.8968 0.0505 -3.3040 33 1 2.9551 2.8372 1.1837 34 1 2.3578 1.4135 2.0694 35 1 0.0220 2.1243 1.6368 36 1 0.6193 3.5480 0.7512 37 1 1.7760 4.3354 2.7988 38 1 1.1783 2.9114 3.6838 39 1 -1.0349 4.2452 2.5429 40 1 -2.8437 5.2036 2.8601 41 1 -5.5471 6.2799 7.0622 42 1 -6.2566 6.7129 5.4882 43 1 -6.5676 7.7310 6.9145 44 1 -5.7265 9.7285 5.6724 45 1 -4.1065 9.7009 4.9348 46 1 -5.4153 8.7107 4.2459 47 1 -3.7099 7.6698 8.0292 48 1 -3.1106 9.0931 7.1441 49 1 -4.7301 9.1212 7.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001265147591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:36 Heat of formation + Delta-G solvation = 16.648647 kcal Electronic energy + Delta-G solvation = -26542.980236 eV Core-core repulsion = 22825.378355 eV Total energy + Delta-G solvation = -3717.601881 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.46821 -39.37116 -37.06122 -36.57709 -34.97449 -32.28473 -30.90786 -29.96827 -28.73386 -27.92282 -27.70878 -26.34045 -25.12053 -23.39198 -22.21058 -21.23358 -21.00566 -20.18555 -19.22322 -18.07498 -17.26566 -16.79264 -15.79948 -15.70461 -15.25451 -15.15818 -14.86437 -14.79880 -14.35334 -14.14036 -13.83154 -13.79808 -13.41640 -13.10174 -12.78099 -12.69522 -12.62746 -12.14596 -12.06697 -11.87520 -11.73589 -11.68858 -11.50068 -11.45863 -11.41428 -11.29648 -10.88811 -10.72170 -10.51282 -10.36874 -10.29801 -9.81289 -9.73602 -9.69841 -9.58097 -9.34828 -9.25629 -8.97661 -8.35845 -6.89870 -5.76853 -3.07794 0.00111 0.88698 1.43053 2.23265 3.08153 3.21777 3.39632 3.47280 3.47962 3.56054 4.24387 4.39946 4.46904 4.50324 4.69627 4.82829 4.96565 5.07793 5.14971 5.23086 5.28982 5.34286 5.38479 5.42849 5.44336 5.46535 5.58499 5.69720 5.77164 5.83456 5.85800 5.88654 6.08236 6.14466 6.39389 6.49541 6.59962 6.74101 6.86103 6.93011 7.10720 7.17504 7.32825 7.42171 7.67092 7.77651 8.08197 8.09393 8.36802 9.24614 9.87723 10.32593 11.27025 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.001933 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.190643 B =14480.927525 C =14802.811607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.166 3.834 3 N -0.597 5.597 4 C -0.248 4.248 5 H 0.073 0.927 6 C -0.004 4.004 7 N -0.897 5.897 8 Si 0.896 3.104 9 H -0.289 1.289 10 H -0.294 1.294 11 H -0.282 1.282 12 C 0.156 3.844 13 C -0.156 4.156 14 C 0.121 3.879 15 N -0.711 5.711 16 C 0.590 3.410 17 O -0.540 6.540 18 C -0.299 4.299 19 C 0.093 3.907 20 N -0.474 5.474 21 C 0.050 3.950 22 C 0.008 3.992 23 C -0.135 4.135 24 C -0.135 4.135 25 C -0.158 4.158 26 S 0.227 5.773 27 H 0.013 0.987 28 H 0.090 0.910 29 H 0.018 0.982 30 H 0.087 0.913 31 H 0.002 0.998 32 H 0.251 0.749 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.066 0.934 36 H 0.068 0.932 37 H 0.067 0.933 38 H 0.066 0.934 39 H 0.401 0.599 40 H 0.181 0.819 41 H 0.057 0.943 42 H 0.068 0.932 43 H 0.067 0.933 44 H 0.067 0.933 45 H 0.057 0.943 46 H 0.068 0.932 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.148 14.320 18.962 27.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.041 3.959 3 N -0.318 5.318 4 C -0.377 4.377 5 H 0.091 0.909 6 C -0.201 4.201 7 N -0.543 5.543 8 Si 0.727 3.273 9 H -0.216 1.216 10 H -0.220 1.220 11 H -0.208 1.208 12 C 0.028 3.972 13 C -0.197 4.197 14 C -0.003 4.003 15 N -0.362 5.362 16 C 0.375 3.625 17 O -0.419 6.419 18 C -0.423 4.423 19 C -0.065 4.065 20 N -0.188 5.188 21 C -0.225 4.225 22 C 0.005 3.995 23 C -0.193 4.193 24 C -0.194 4.194 25 C -0.216 4.216 26 S 0.487 5.513 27 H 0.031 0.969 28 H 0.108 0.892 29 H 0.037 0.963 30 H 0.105 0.895 31 H 0.020 0.980 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.058 0.942 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.084 0.916 39 H 0.236 0.764 40 H 0.198 0.802 41 H 0.076 0.924 42 H 0.087 0.913 43 H 0.086 0.914 44 H 0.086 0.914 45 H 0.076 0.924 46 H 0.087 0.913 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -12.400 14.636 20.014 27.722 hybrid contribution -0.095 -0.414 -2.156 2.198 sum -12.495 14.222 17.857 26.025 Atomic orbital electron populations 1.22415 0.99387 0.98156 1.00991 1.20803 0.92447 0.84501 0.98174 1.44257 1.75723 1.10214 1.01584 1.19282 1.31224 1.03608 0.83575 0.90889 1.24723 0.98001 1.00076 0.97318 1.70150 1.27312 1.31969 1.24858 0.86381 0.80357 0.77825 0.82777 1.21638 1.22021 1.20808 1.20663 0.93557 0.94179 0.88793 1.22752 1.03070 0.99750 0.94082 1.21600 0.84633 0.95387 0.98650 1.45944 1.17924 1.49269 1.23072 1.16741 0.85164 0.78755 0.81872 1.90834 1.39866 1.63521 1.47708 1.25908 1.01442 1.11817 1.03155 1.22206 0.86551 0.97304 1.00440 1.66012 1.31703 1.09779 1.11258 1.27616 0.98535 1.00808 0.95510 1.19299 0.92279 0.93614 0.94346 1.21849 0.95514 0.99435 1.02543 1.21852 1.01724 0.96194 0.99587 1.22068 1.01745 1.01866 0.95888 1.84027 1.07894 1.39270 1.20114 0.96851 0.89155 0.96321 0.89499 0.97970 0.93845 0.93483 0.94165 0.91496 0.91332 0.91472 0.91588 0.76410 0.80185 0.92399 0.91262 0.91430 0.91423 0.92385 0.91267 0.91656 0.91655 0.90370 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.37 9.58 37.16 0.36 -3.01 16 2 C 0.17 3.92 5.64 -4.04 -0.02 3.90 16 3 N -0.60 -14.26 2.54 -173.25 -0.44 -14.70 16 4 C -0.25 -6.52 9.70 -15.06 -0.15 -6.67 16 5 H 0.07 1.90 7.93 -52.49 -0.42 1.48 16 6 C 0.00 -0.11 4.91 -17.43 -0.09 -0.20 16 7 N -0.90 -24.59 8.54 55.49 0.47 -24.12 16 8 Si 0.90 21.34 29.62 -169.99 -5.03 16.31 16 9 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 10 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 11 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 12 C 0.16 3.04 5.71 -4.05 -0.02 3.01 16 13 C -0.16 -2.62 5.53 -26.73 -0.15 -2.77 16 14 C 0.12 1.78 5.67 -4.04 -0.02 1.75 16 15 N -0.71 -9.47 5.54 -61.62 -0.34 -9.81 16 16 C 0.59 8.58 7.79 -12.85 -0.10 8.48 16 17 O -0.54 -9.60 16.96 5.21 0.09 -9.51 16 18 C -0.30 -3.67 6.48 -37.10 -0.24 -3.91 16 19 C 0.09 1.03 10.93 -18.85 -0.21 0.82 16 20 N -0.47 -5.25 10.49 -11.50 -0.12 -5.37 16 21 C 0.05 0.48 5.78 -13.29 -0.08 0.40 16 22 C 0.01 0.06 0.99 -155.66 -0.15 -0.10 16 23 C -0.13 -0.83 8.45 37.16 0.31 -0.52 16 24 C -0.13 -0.84 8.45 37.16 0.31 -0.53 16 25 C -0.16 -0.80 7.53 37.16 0.28 -0.52 16 26 S 0.23 2.33 21.38 -107.50 -2.30 0.04 16 27 H 0.01 0.26 5.98 -51.93 -0.31 -0.05 16 28 H 0.09 2.30 6.28 -51.93 -0.33 1.98 16 29 H 0.02 0.38 8.14 -51.92 -0.42 -0.05 16 30 H 0.09 2.30 5.87 -51.93 -0.31 2.00 16 31 H 0.00 0.05 7.97 -51.93 -0.41 -0.37 16 32 H 0.25 6.77 8.31 -40.82 -0.34 6.43 16 33 H 0.05 0.90 8.03 -51.93 -0.42 0.48 16 34 H 0.04 0.73 7.95 -51.93 -0.41 0.32 16 35 H 0.07 1.17 5.93 -51.93 -0.31 0.86 16 36 H 0.07 1.25 8.14 -51.93 -0.42 0.83 16 37 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 39 H 0.40 4.49 7.18 -40.82 -0.29 4.19 16 40 H 0.18 1.59 7.15 -52.48 -0.38 1.21 16 41 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 42 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 44 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 45 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 47 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 48 H 0.06 0.33 7.92 -51.93 -0.41 -0.08 16 49 H 0.08 0.27 8.14 -51.94 -0.42 -0.15 16 LS Contribution 403.53 15.07 6.08 6.08 Total: -1.00 -30.69 403.53 -9.74 -40.43 By element: Atomic # 1 Polarization: 8.68 SS G_CDS: -8.19 Total: 0.49 kcal Atomic # 6 Polarization: 0.11 SS G_CDS: 0.04 Total: 0.15 kcal Atomic # 7 Polarization: -53.57 SS G_CDS: -0.43 Total: -54.00 kcal Atomic # 8 Polarization: -9.60 SS G_CDS: 0.09 Total: -9.51 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.03 Total: 16.31 kcal Atomic # 16 Polarization: 2.33 SS G_CDS: -2.30 Total: 0.04 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -30.69 -9.74 -40.43 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265147591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.082 kcal (2) G-P(sol) polarization free energy of solvation -30.694 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.389 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.740 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.433 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds