Wall clock time and date at job start Sat Apr 11 2020 05:46:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46503 * 109.47140 * 2 1 4 4 C 1.36938 * 119.99672 * 264.28735 * 3 2 1 5 5 H 1.07999 * 120.00196 * 188.63609 * 4 3 2 6 6 C 1.38817 * 120.00008 * 8.63973 * 4 3 2 7 7 N 1.31615 * 120.00019 * 24.59781 * 6 4 3 8 8 Si 1.86804 * 119.99850 * 204.60437 * 6 4 3 9 9 H 1.48504 * 109.47024 * 85.02260 * 8 6 4 10 10 H 1.48495 * 109.47151 * 205.02296 * 8 6 4 11 11 H 1.48496 * 109.47132 * 325.02474 * 8 6 4 12 12 C 1.46489 * 120.00353 * 84.28462 * 3 2 1 13 13 C 1.53000 * 109.47387 * 270.00421 * 12 3 2 14 14 C 1.53008 * 109.47286 * 179.97438 * 13 12 3 15 15 N 1.46490 * 109.46942 * 179.97438 * 14 13 12 16 16 C 1.34783 * 119.99927 * 180.02562 * 15 14 13 17 17 O 1.21680 * 119.99744 * 359.97438 * 16 15 14 18 18 C 1.46683 * 120.00025 * 179.97438 * 16 15 14 19 19 C 1.35659 * 126.13192 * 359.97438 * 18 16 15 20 20 N 1.30943 * 114.19107 * 179.74910 * 19 18 16 21 21 C 1.29428 * 117.36546 * 0.51523 * 20 19 18 22 22 C 1.50697 * 124.80569 * 179.76971 * 21 20 19 23 23 C 1.52995 * 109.47321 * 59.69907 * 22 21 20 24 24 C 1.53004 * 109.47052 * 299.69319 * 22 21 20 25 25 C 1.52999 * 109.47235 * 179.69884 * 22 21 20 26 26 S 1.70954 * 110.38850 * 359.50261 * 21 20 19 27 27 H 1.08995 * 109.47335 * 300.00107 * 1 2 3 28 28 H 1.09003 * 109.47101 * 60.00680 * 1 2 3 29 29 H 1.09007 * 109.46993 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47533 * 239.99386 * 2 1 3 31 31 H 1.09003 * 109.47101 * 119.99320 * 2 1 3 32 32 H 0.97001 * 119.99543 * 179.97438 * 7 6 4 33 33 H 1.08998 * 109.47244 * 150.00086 * 12 3 2 34 34 H 1.09001 * 109.47326 * 30.00517 * 12 3 2 35 35 H 1.08998 * 109.47202 * 59.99639 * 13 12 3 36 36 H 1.08999 * 109.46923 * 299.99767 * 13 12 3 37 37 H 1.09003 * 109.46860 * 59.99583 * 14 13 12 38 38 H 1.08999 * 109.46959 * 299.99757 * 14 13 12 39 39 H 0.97000 * 120.00595 * 359.97438 * 15 14 13 40 40 H 1.08004 * 122.90752 * 0.02562 * 19 18 16 41 41 H 1.08999 * 109.47276 * 60.00034 * 23 22 21 42 42 H 1.08999 * 109.46779 * 299.99750 * 23 22 21 43 43 H 1.09001 * 109.47322 * 180.02562 * 23 22 21 44 44 H 1.08995 * 109.46873 * 179.97438 * 24 22 21 45 45 H 1.08993 * 109.47105 * 300.00719 * 24 22 21 46 46 H 1.09006 * 109.46404 * 60.00299 * 24 22 21 47 47 H 1.09007 * 109.46825 * 300.00403 * 25 22 21 48 48 H 1.09007 * 109.46998 * 59.99119 * 25 22 21 49 49 H 1.08989 * 109.47627 * 179.97438 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3578 1.9874 -1.1801 5 1 2.8470 2.9502 -1.1715 6 6 2.0731 1.3643 -2.3874 7 7 1.0959 0.4856 -2.4602 8 14 3.0771 1.7728 -3.9088 9 1 4.3047 0.9375 -3.9308 10 1 2.2691 1.4973 -5.1238 11 1 3.4557 3.2085 -3.8812 12 6 2.1434 2.1140 1.2623 13 6 0.8337 2.8475 1.5582 14 6 0.9641 3.6123 2.8770 15 7 -0.2897 4.3150 3.1599 16 6 -0.4076 5.0596 4.2772 17 8 0.5273 5.1477 5.0510 18 6 -1.6628 5.7638 4.5603 19 6 -2.7779 5.7529 3.7877 20 7 -3.7695 6.4613 4.2667 21 6 -3.5719 7.0809 5.3857 22 6 -4.5918 7.9439 6.0829 23 6 -5.8297 7.1067 6.4106 24 6 -4.9885 9.1046 5.1683 25 6 -3.9926 8.4967 7.3776 26 16 -1.9926 6.7758 5.9646 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8933 -0.5137 0.8901 32 1 0.8968 0.0505 -3.3040 33 1 2.9551 2.8372 1.1837 34 1 2.3578 1.4135 2.0694 35 1 0.0220 2.1243 1.6368 36 1 0.6193 3.5480 0.7512 37 1 1.7760 4.3354 2.7988 38 1 1.1783 2.9114 3.6838 39 1 -1.0349 4.2452 2.5429 40 1 -2.8437 5.2036 2.8601 41 1 -5.5471 6.2799 7.0622 42 1 -6.2566 6.7129 5.4882 43 1 -6.5676 7.7310 6.9145 44 1 -5.7265 9.7285 5.6724 45 1 -4.1065 9.7009 4.9348 46 1 -5.4153 8.7107 4.2459 47 1 -3.7099 7.6698 8.0292 48 1 -3.1106 9.0931 7.1441 49 1 -4.7301 9.1212 7.8816 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001265147591.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:46:35 Heat of formation + Delta-G solvation = -0.937980 kcal Electronic energy + Delta-G solvation = -26543.742849 eV Core-core repulsion = 22825.378355 eV Total energy + Delta-G solvation = -3718.364494 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 339.172 amu Computer time = 0.87 seconds Orbital eigenvalues (eV) -41.36682 -40.41165 -38.29519 -37.64041 -36.35219 -33.87352 -32.43314 -31.35181 -30.32077 -28.35015 -28.18605 -27.34167 -26.59438 -25.05658 -23.20081 -22.68314 -22.04895 -21.71563 -20.22237 -18.88359 -18.65614 -18.18577 -17.13006 -16.87263 -16.56917 -16.09677 -15.99654 -15.61927 -15.49478 -15.43231 -14.93763 -14.82114 -14.53971 -14.49454 -14.30836 -13.69396 -13.32432 -13.22903 -13.16618 -13.08184 -12.91112 -12.69115 -12.61817 -12.61474 -12.55766 -12.38542 -12.15438 -12.11756 -12.00304 -11.95462 -11.67745 -11.50636 -11.35808 -11.16388 -10.63224 -10.58911 -10.32750 -10.24697 -9.95833 -8.81458 -7.78219 -5.09194 -0.85567 0.06709 0.61473 1.33071 1.48736 1.52879 1.58087 2.05108 2.12936 2.56425 2.88189 3.30940 3.62230 3.65200 3.69422 3.92078 3.97216 4.08004 4.11253 4.25725 4.27934 4.46747 4.65728 4.68636 4.73480 4.78073 4.80194 4.84012 4.84681 4.90611 4.96022 4.96543 5.04057 5.05811 5.20881 5.23659 5.25578 5.33071 5.33751 5.35617 5.37956 5.54955 5.65337 5.83994 6.19700 6.32868 6.39613 6.51712 6.98918 7.25093 7.97092 8.36840 9.23514 Molecular weight = 339.17amu Principal moments of inertia in cm(-1) A = 0.020194 B = 0.001933 C = 0.001891 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.190643 B =14480.927525 C =14802.811607 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.166 3.834 3 N -0.612 5.612 4 C -0.253 4.253 5 H 0.071 0.929 6 C -0.052 4.052 7 N -0.915 5.915 8 Si 0.952 3.048 9 H -0.292 1.292 10 H -0.299 1.299 11 H -0.276 1.276 12 C 0.151 3.849 13 C -0.134 4.134 14 C 0.133 3.867 15 N -0.705 5.705 16 C 0.593 3.407 17 O -0.579 6.579 18 C -0.331 4.331 19 C 0.105 3.895 20 N -0.495 5.495 21 C 0.063 3.937 22 C 0.004 3.996 23 C -0.132 4.132 24 C -0.132 4.132 25 C -0.158 4.158 26 S 0.235 5.765 27 H 0.031 0.969 28 H 0.058 0.942 29 H 0.029 0.971 30 H 0.055 0.945 31 H 0.022 0.978 32 H 0.245 0.755 33 H 0.048 0.952 34 H 0.057 0.943 35 H 0.064 0.936 36 H 0.052 0.948 37 H 0.063 0.937 38 H 0.069 0.931 39 H 0.412 0.588 40 H 0.198 0.802 41 H 0.054 0.946 42 H 0.054 0.946 43 H 0.090 0.910 44 H 0.090 0.910 45 H 0.054 0.946 46 H 0.054 0.946 47 H 0.064 0.936 48 H 0.064 0.936 49 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.260 15.563 20.431 29.377 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.041 3.959 3 N -0.333 5.333 4 C -0.383 4.383 5 H 0.089 0.911 6 C -0.247 4.247 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.220 1.220 10 H -0.226 1.226 11 H -0.202 1.202 12 C 0.024 3.976 13 C -0.175 4.175 14 C 0.009 3.991 15 N -0.356 5.356 16 C 0.379 3.621 17 O -0.460 6.460 18 C -0.455 4.455 19 C -0.054 4.054 20 N -0.209 5.209 21 C -0.211 4.211 22 C 0.000 4.000 23 C -0.191 4.191 24 C -0.191 4.191 25 C -0.216 4.216 26 S 0.496 5.504 27 H 0.049 0.951 28 H 0.077 0.923 29 H 0.048 0.952 30 H 0.073 0.927 31 H 0.040 0.960 32 H 0.054 0.946 33 H 0.067 0.933 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.071 0.929 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.249 0.751 40 H 0.215 0.785 41 H 0.073 0.927 42 H 0.073 0.927 43 H 0.109 0.891 44 H 0.109 0.891 45 H 0.073 0.927 46 H 0.073 0.927 47 H 0.083 0.917 48 H 0.083 0.917 49 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -13.519 15.895 21.497 29.958 hybrid contribution 0.192 -0.747 -2.532 2.647 sum -13.327 15.147 18.964 27.689 Atomic orbital electron populations 1.22194 0.98493 0.98658 1.00190 1.20703 0.93159 0.84515 0.97510 1.44404 1.76038 1.10618 1.02278 1.19488 1.30669 1.03490 0.84668 0.91086 1.25322 0.98955 1.00836 0.99545 1.70302 1.28169 1.32953 1.24798 0.85507 0.78710 0.77676 0.79930 1.21967 1.22649 1.20175 1.20825 0.94757 0.94560 0.87477 1.22380 1.01332 0.99133 0.94605 1.21335 0.85194 0.95209 0.97373 1.45796 1.17802 1.48822 1.23149 1.16947 0.85428 0.78341 0.81355 1.90807 1.41301 1.64987 1.48944 1.25722 1.01036 1.13763 1.04969 1.22508 0.85946 0.96398 1.00557 1.66115 1.31832 1.10767 1.12153 1.28272 0.98562 0.99517 0.94757 1.19553 0.91896 0.93484 0.95042 1.21847 0.95566 0.99668 1.02010 1.21851 1.02128 0.96048 0.99097 1.22105 1.02323 1.02165 0.94980 1.83971 1.08248 1.38781 1.19418 0.95056 0.92349 0.95164 0.92698 0.95964 0.94563 0.93315 0.92467 0.91771 0.92873 0.91830 0.91302 0.75129 0.78549 0.92675 0.92661 0.89095 0.89080 0.92721 0.92672 0.91657 0.91707 0.88131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.99 9.58 71.98 0.69 -5.30 16 2 C 0.17 7.78 5.64 86.38 0.49 8.27 16 3 N -0.61 -28.91 2.54 -702.03 -1.78 -30.69 16 4 C -0.25 -13.32 9.70 84.03 0.82 -12.50 16 5 H 0.07 3.68 7.93 -2.91 -0.02 3.66 16 6 C -0.05 -2.78 4.91 84.86 0.42 -2.36 16 7 N -0.91 -50.87 8.54 21.65 0.18 -50.69 16 8 Si 0.95 44.29 29.62 68.60 2.03 46.32 16 9 H -0.29 -13.63 7.11 99.48 0.71 -12.93 16 10 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 11 H -0.28 -12.46 7.11 99.48 0.71 -11.75 16 12 C 0.15 5.67 5.71 86.38 0.49 6.16 16 13 C -0.13 -4.36 5.53 30.60 0.17 -4.19 16 14 C 0.13 3.76 5.67 86.38 0.49 4.25 16 15 N -0.70 -18.08 5.54 -467.09 -2.59 -20.67 16 16 C 0.59 16.96 7.79 86.45 0.67 17.63 16 17 O -0.58 -20.49 16.96 -4.28 -0.07 -20.56 16 18 C -0.33 -7.91 6.48 23.88 0.15 -7.75 16 19 C 0.11 2.20 10.93 84.23 0.92 3.12 16 20 N -0.50 -10.44 10.49 -190.30 -2.00 -12.43 16 21 C 0.06 1.12 5.78 88.46 0.51 1.63 16 22 C 0.00 0.05 0.99 -52.93 -0.05 0.00 16 23 C -0.13 -1.36 8.45 71.98 0.61 -0.75 16 24 C -0.13 -1.38 8.45 71.98 0.61 -0.78 16 25 C -0.16 -1.22 7.53 71.98 0.54 -0.68 16 26 S 0.24 4.64 21.38 -56.49 -1.21 3.44 16 27 H 0.03 1.22 5.98 -2.39 -0.01 1.21 16 28 H 0.06 2.98 6.28 -2.39 -0.01 2.96 16 29 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 30 H 0.05 2.93 5.87 -2.39 -0.01 2.92 16 31 H 0.02 0.94 7.97 -2.39 -0.02 0.92 16 32 H 0.24 13.44 8.31 -92.71 -0.77 12.67 16 33 H 0.05 1.81 8.03 -2.39 -0.02 1.79 16 34 H 0.06 1.96 7.95 -2.39 -0.02 1.94 16 35 H 0.06 2.13 5.93 -2.39 -0.01 2.12 16 36 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.07 1.95 8.14 -2.39 -0.02 1.93 16 39 H 0.41 8.72 7.18 -92.71 -0.67 8.06 16 40 H 0.20 3.20 7.15 -2.91 -0.02 3.18 16 41 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 42 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 43 H 0.09 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 0.53 8.14 -2.39 -0.02 0.51 16 45 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16 46 H 0.05 0.74 8.14 -2.38 -0.02 0.72 16 47 H 0.06 0.52 7.92 -2.38 -0.02 0.50 16 48 H 0.06 0.52 7.92 -2.38 -0.02 0.51 16 49 H 0.10 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -65.76 403.53 2.37 -63.39 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.27 Total: 15.16 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 7.53 Total: 6.74 kcal Atomic # 7 Polarization: -108.30 SS G_CDS: -6.18 Total: -114.48 kcal Atomic # 8 Polarization: -20.49 SS G_CDS: -0.07 Total: -20.56 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 4.64 SS G_CDS: -1.21 Total: 3.44 kcal Total: -65.76 2.37 -63.39 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001265147591.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.450 kcal (2) G-P(sol) polarization free energy of solvation -65.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.311 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds