Wall clock time and date at job start Sat Apr 11 2020 05:45:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09004 * 109.47331 * 2 1 4 4 C 1.53003 * 109.47044 * 120.00173 * 2 1 3 5 5 N 1.46505 * 109.47070 * 175.00144 * 4 2 1 6 6 C 1.36935 * 119.99630 * 179.97438 * 5 4 2 7 7 H 1.07998 * 120.00343 * 0.02562 * 6 5 4 8 8 C 1.38813 * 119.99559 * 179.97438 * 6 5 4 9 9 N 1.31615 * 120.00585 * 359.97438 * 8 6 5 10 10 Si 1.86808 * 119.99829 * 180.02562 * 8 6 5 11 11 H 1.48503 * 109.46979 * 89.99876 * 10 8 6 12 12 H 1.48499 * 109.46984 * 209.99888 * 10 8 6 13 13 H 1.48498 * 109.47196 * 330.00200 * 10 8 6 14 14 N 1.46505 * 109.47195 * 239.99686 * 2 1 3 15 15 C 1.46494 * 120.00025 * 305.56382 * 14 2 1 16 16 C 1.34778 * 119.99660 * 125.55995 * 14 2 1 17 17 O 1.21286 * 119.99958 * 184.55473 * 16 14 2 18 18 C 1.50698 * 120.00275 * 4.56549 * 16 14 2 19 19 H 1.08999 * 109.47365 * 40.14307 * 18 16 14 20 20 C 1.53010 * 109.46792 * 280.14525 * 18 16 14 21 21 N 1.46501 * 109.47260 * 160.14617 * 18 16 14 22 22 C 1.34777 * 119.99729 * 204.99229 * 21 18 16 23 23 O 1.21281 * 120.00271 * 0.02562 * 22 21 18 24 24 C 1.50704 * 119.99702 * 179.97438 * 22 21 18 25 25 N 1.46504 * 109.46933 * 180.02562 * 24 22 21 26 26 C 1.34592 * 126.43432 * 125.00023 * 25 24 22 27 27 N 1.31082 * 106.67582 * 180.02562 * 26 25 24 28 28 N 1.28835 * 107.98841 * 0.02562 * 27 26 25 29 29 N 1.28738 * 109.39995 * 359.73002 * 28 27 26 30 30 H 1.09001 * 109.46602 * 60.00062 * 1 2 3 31 31 H 1.09004 * 109.47331 * 179.97438 * 1 2 3 32 32 H 1.08999 * 109.47308 * 300.00155 * 1 2 3 33 33 H 1.08999 * 109.46963 * 294.99821 * 4 2 1 34 34 H 1.08991 * 109.47420 * 55.00034 * 4 2 1 35 35 H 0.96997 * 120.00161 * 359.97438 * 5 4 2 36 36 H 0.97000 * 120.00659 * 179.97438 * 9 8 6 37 37 H 1.09004 * 109.47154 * 87.20730 * 15 14 2 38 38 H 1.09003 * 109.47095 * 207.20766 * 15 14 2 39 39 H 1.08997 * 109.47496 * 327.20173 * 15 14 2 40 40 H 1.08995 * 109.47016 * 173.81990 * 20 18 16 41 41 H 1.09000 * 109.46829 * 293.82346 * 20 18 16 42 42 H 1.09002 * 109.46882 * 53.81921 * 20 18 16 43 43 H 0.96998 * 120.00175 * 24.99948 * 21 18 16 44 44 H 1.09001 * 109.47360 * 300.00433 * 24 22 21 45 45 H 1.08998 * 109.46642 * 60.00367 * 24 22 21 46 46 H 1.07993 * 126.66693 * 0.03982 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1838 -1.4380 2.2073 7 1 3.6467 -1.8432 3.0521 8 6 5.5672 -1.5380 2.1514 9 7 6.2217 -1.0456 1.1212 10 14 6.5000 -2.3730 3.5380 11 1 6.6315 -3.8225 3.2435 12 1 7.8507 -1.7681 3.6604 13 1 5.7592 -2.1920 4.8122 14 7 2.0183 -0.6907 -1.1962 15 6 1.5668 -2.0527 -1.4912 16 6 2.8829 -0.0729 -2.0252 17 8 3.2233 -0.6113 -3.0574 18 6 3.4271 1.2867 -1.6696 19 1 3.6474 1.3222 -0.6027 20 6 2.3886 2.3570 -2.0118 21 7 4.6541 1.5359 -2.4303 22 6 5.5763 2.3978 -1.9580 23 8 5.3907 2.9668 -0.9031 24 6 6.8388 2.6537 -2.7402 25 7 7.6715 3.6207 -2.0206 26 6 8.9537 3.4507 -1.6483 27 7 9.3159 4.5503 -1.0336 28 7 8.3086 5.3534 -1.0282 29 7 7.3149 4.7970 -1.6285 30 1 -0.3632 0.5138 -0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 1.7516 -0.1584 2.1370 34 1 1.6054 -1.7198 1.2952 35 1 3.9824 -0.4628 0.4317 36 1 7.1884 -1.1152 1.0823 37 1 0.6394 -2.0124 -2.0625 38 1 2.3297 -2.5704 -2.0727 39 1 1.3956 -2.5890 -0.5578 40 1 2.7353 3.3269 -1.6551 41 1 2.2493 2.3958 -3.0922 42 1 1.4414 2.1108 -1.5319 43 1 4.8027 1.0806 -3.2738 44 1 7.3879 1.7197 -2.8596 45 1 6.5834 3.0530 -3.7217 46 1 9.5654 2.5779 -1.8224 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001568309569.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 05:45:37 Heat of formation + Delta-G solvation = 80.053116 kcal Electronic energy + Delta-G solvation = -31033.658659 eV Core-core repulsion = 26804.805739 eV Total energy + Delta-G solvation = -4228.852920 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 339.181 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -44.09188 -40.58885 -39.34282 -36.90392 -35.60921 -34.89381 -34.01182 -32.39818 -31.64658 -31.44389 -30.13252 -28.88294 -27.18145 -25.75433 -24.37093 -23.76435 -23.17419 -22.70943 -21.39370 -20.66553 -19.24782 -18.19917 -17.78767 -17.24823 -16.94185 -16.39754 -16.09652 -15.88328 -15.59981 -15.22075 -14.98037 -14.72696 -14.15000 -13.94604 -13.68169 -13.57706 -13.37593 -13.13404 -12.72747 -12.58014 -12.55418 -12.34815 -12.30905 -12.07321 -12.03425 -11.87095 -11.66302 -11.41155 -11.13736 -11.08240 -10.96363 -10.86697 -10.74439 -10.35128 -10.15308 -9.93141 -9.81885 -9.67073 -9.17751 -8.96831 -8.48352 -7.02500 -5.84490 -3.13502 1.26678 1.81777 2.35797 2.41760 2.64040 2.86685 3.26579 3.38583 3.44295 3.45707 4.10113 4.26124 4.37899 4.46075 4.52208 4.53367 4.82071 4.88576 5.03420 5.15420 5.21158 5.30774 5.45164 5.45962 5.50366 5.56451 5.67010 5.71139 5.74299 5.76268 5.83659 5.97573 6.04051 6.06327 6.07250 6.18576 6.24972 6.39272 6.52063 6.69849 7.33856 7.48384 7.62339 8.06600 8.21993 8.32717 8.67888 9.44954 9.99374 10.33591 11.37591 Molecular weight = 339.18amu Principal moments of inertia in cm(-1) A = 0.008256 B = 0.004602 C = 0.003309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3390.589436 B = 6083.460177 C = 8458.771276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.112 3.888 3 H 0.094 0.906 4 C 0.138 3.862 5 N -0.729 5.729 6 C -0.243 4.243 7 H 0.071 0.929 8 C -0.009 4.009 9 N -0.928 5.928 10 Si 0.907 3.093 11 H -0.290 1.290 12 H -0.291 1.291 13 H -0.281 1.281 14 N -0.589 5.589 15 C 0.091 3.909 16 C 0.522 3.478 17 O -0.547 6.547 18 C 0.126 3.874 19 H 0.123 0.877 20 C -0.161 4.161 21 N -0.702 5.702 22 C 0.508 3.492 23 O -0.498 6.498 24 C 0.099 3.901 25 N -0.297 5.297 26 C 0.166 3.834 27 N -0.309 5.309 28 N -0.082 5.082 29 N -0.065 5.065 30 H 0.058 0.942 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.025 0.975 35 H 0.381 0.619 36 H 0.253 0.747 37 H 0.049 0.951 38 H 0.075 0.925 39 H 0.074 0.926 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.073 0.927 43 H 0.409 0.591 44 H 0.146 0.854 45 H 0.135 0.865 46 H 0.235 0.765 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.752 3.596 -12.611 14.749 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.009 3.991 3 H 0.112 0.888 4 C 0.010 3.990 5 N -0.374 5.374 6 C -0.374 4.374 7 H 0.089 0.911 8 C -0.206 4.206 9 N -0.576 5.576 10 Si 0.738 3.262 11 H -0.217 1.217 12 H -0.217 1.217 13 H -0.207 1.207 14 N -0.321 5.321 15 C -0.051 4.051 16 C 0.309 3.691 17 O -0.425 6.425 18 C 0.018 3.982 19 H 0.140 0.860 20 C -0.220 4.220 21 N -0.357 5.357 22 C 0.290 3.710 23 O -0.371 6.371 24 C -0.027 4.027 25 N -0.099 5.099 26 C -0.133 4.133 27 N -0.157 5.157 28 N -0.076 5.076 29 N -0.052 5.052 30 H 0.077 0.923 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.051 0.949 34 H 0.043 0.957 35 H 0.216 0.784 36 H 0.063 0.937 37 H 0.068 0.932 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.084 0.916 42 H 0.092 0.908 43 H 0.246 0.754 44 H 0.164 0.836 45 H 0.152 0.848 46 H 0.251 0.749 Dipole moment (debyes) X Y Z Total from point charges -6.872 4.942 -11.689 14.432 hybrid contribution 0.859 -1.898 -0.110 2.086 sum -6.013 3.044 -11.799 13.588 Atomic orbital electron populations 1.22069 0.94254 1.02844 1.02382 1.21737 0.94525 0.97393 0.85461 0.88761 1.21074 0.87149 0.97282 0.93501 1.42277 0.99561 1.70468 1.25089 1.19172 0.89406 1.29757 0.99082 0.91134 1.24718 0.96424 1.01395 0.98034 1.69653 1.07043 1.50685 1.30209 0.86202 0.79473 0.78926 0.81633 1.21744 1.21745 1.20712 1.47630 1.44740 1.15762 1.23952 1.21549 0.99481 0.82438 1.01643 1.20347 0.78417 0.86916 0.83401 1.90633 1.59646 1.67107 1.25100 1.20854 0.85342 0.92425 0.99616 0.85968 1.22195 0.98115 0.99053 1.02596 1.45394 1.19094 1.45277 1.25910 1.19964 0.84188 0.80475 0.86387 1.90884 1.77015 1.47844 1.21310 1.21948 0.91962 0.92959 0.95835 1.48077 1.10675 1.12475 1.38697 1.27744 0.85172 1.01825 0.98531 1.74971 1.22459 1.00711 1.17511 1.78622 0.93160 1.21693 1.14146 1.78949 1.21765 0.92856 1.11603 0.92323 0.91831 0.90942 0.94913 0.95703 0.78444 0.93707 0.93236 0.90642 0.90747 0.90506 0.91621 0.90820 0.75372 0.83592 0.84753 0.74856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.61 9.11 37.16 0.34 -1.27 16 2 C 0.11 1.59 2.04 -67.93 -0.14 1.45 16 3 H 0.09 1.34 4.55 -51.93 -0.24 1.10 16 4 C 0.14 2.53 5.61 -4.04 -0.02 2.50 16 5 N -0.73 -17.54 5.43 -59.91 -0.33 -17.86 16 6 C -0.24 -6.62 9.99 -15.06 -0.15 -6.77 16 7 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 8 C -0.01 -0.26 5.50 -17.43 -0.10 -0.36 16 9 N -0.93 -27.22 13.06 55.49 0.72 -26.50 16 10 Si 0.91 22.31 29.55 -169.99 -5.02 17.28 16 11 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 14 N -0.59 -8.90 2.33 -173.93 -0.40 -9.30 16 15 C 0.09 1.27 9.30 59.84 0.56 1.82 16 16 C 0.52 8.42 6.32 -10.99 -0.07 8.36 16 17 O -0.55 -9.69 15.50 5.55 0.09 -9.60 16 18 C 0.13 1.88 2.01 -69.08 -0.14 1.74 16 19 H 0.12 2.27 5.32 -51.93 -0.28 1.99 16 20 C -0.16 -1.89 9.07 37.16 0.34 -1.55 16 21 N -0.70 -9.29 5.04 -54.93 -0.28 -9.56 16 22 C 0.51 7.20 7.81 -10.98 -0.09 7.12 16 23 O -0.50 -9.68 15.37 5.56 0.09 -9.59 16 24 C 0.10 0.90 6.97 -5.19 -0.04 0.87 16 25 N -0.30 -3.84 3.19 -63.73 -0.20 -4.04 16 26 C 0.17 2.00 12.79 -90.39 -1.16 0.84 16 27 N -0.31 -4.93 12.36 29.59 0.37 -4.56 16 28 N -0.08 -1.46 13.43 60.35 0.81 -0.65 16 29 N -0.07 -1.08 12.30 60.35 0.74 -0.34 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.62 7.55 -51.93 -0.39 0.23 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.03 0.45 7.08 -51.93 -0.37 0.09 16 35 H 0.38 9.64 5.58 -40.82 -0.23 9.41 16 36 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 1.17 7.41 -51.93 -0.38 0.79 16 39 H 0.07 1.02 6.83 -51.93 -0.35 0.66 16 40 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 42 H 0.07 0.76 6.62 -51.93 -0.34 0.42 16 43 H 0.41 4.53 7.74 -40.82 -0.32 4.21 16 44 H 0.15 0.82 8.08 -51.93 -0.42 0.40 16 45 H 0.13 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.24 1.53 8.06 -52.49 -0.42 1.11 16 LS Contribution 383.32 15.07 5.78 5.78 Total: -1.00 -39.11 383.32 -4.55 -43.66 By element: Atomic # 1 Polarization: 16.80 SS G_CDS: -6.25 Total: 10.55 kcal Atomic # 6 Polarization: 15.40 SS G_CDS: -0.66 Total: 14.74 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: 1.43 Total: -72.81 kcal Atomic # 8 Polarization: -19.37 SS G_CDS: 0.17 Total: -19.20 kcal Atomic # 14 Polarization: 22.31 SS G_CDS: -5.02 Total: 17.28 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -39.11 -4.55 -43.66 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001568309569.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.712 kcal (2) G-P(sol) polarization free energy of solvation -39.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.659 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds